mRNA_Ecto-sp13_S_contig17376.5191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17376.5191.1
Unique NamemRNA_Ecto-sp13_S_contig17376.5191.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17376.5191.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.590e-33
Identity = 71/77 (92.21%), Postives = 71/77 (92.21%), Query Frame = 1 
Query: 1189 MESDLDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDKAKRVRESLG 1419
            MESDLDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDK KR     G
Sbjct:    1 MESDLDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDKVKRSGPGSG 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17376.5191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM1_ECTSI1.590e-3392.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17376contigEcto-sp13_S_contig17376:306..2497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1473
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004370.1
Cds size1473
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.4522717-CDS-Ecto-sp13_S_contig17376:305..5131681462906.4522717-CDS-Ecto-sp13_S_contig17376:305..513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17376 306..513 -
1681462906.4663887-CDS-Ecto-sp13_S_contig17376:875..16781681462906.4663887-CDS-Ecto-sp13_S_contig17376:875..1678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17376 876..1678 -
1681462906.4761224-CDS-Ecto-sp13_S_contig17376:2035..24971681462906.4761224-CDS-Ecto-sp13_S_contig17376:2035..2497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17376 2036..2497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17376.5191.1prot_Ecto-sp13_S_contig17376.5191.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17376 306..2497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17376.5191.1

>prot_Ecto-sp13_S_contig17376.5191.1 ID=prot_Ecto-sp13_S_contig17376.5191.1|Name=mRNA_Ecto-sp13_S_contig17376.5191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=491bp
QPTESLQARRGEDSDTTPTFSSSNATNRPSFLNAYNAKQEDDDDEDRMGP
GFLRGPTSYNSPTTPLSSRSASPPPSPPRSLTPRQPAGPPPASPCGAPRG
FRADGILRRSARDSGSSTTARAGGDGDDVAAVRVGEVPPSPAGTTDGVEW
PGVKHVAQSAATSPNGGGGGISACSSPAPVKPPPLPPHNSKLPSSLPIPP
PETPRALEDGGVDSTTTTATASAFSFSHEATSTSTAGVSSSSSPRPPPTP
PRGFRPGEAASSSQRLVSSPTSSSPAAAASSPASPPRVMSSPPSSSSLAL
SPTTTTATTSPAARATAAAAAASPTEGKGAGGAASSLGADDLPTPPPKMY
SSRQLQQQQQQQQQQQRFSSQRGSSFKVKSGGGGSPVVGGGGNEDAMESD
LDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGD
GGGGVTTSPQKLDKAKRVRESLGGLQEQQQQQQQQRSSPDR
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mRNA from alignment at Ecto-sp13_S_contig17376:306..2497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17376.5191.1 ID=mRNA_Ecto-sp13_S_contig17376.5191.1|Name=mRNA_Ecto-sp13_S_contig17376.5191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17376:306..2497- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGACAGAAAGCCTCCAGGCCCGCAGAGGAGAAGACTCCGACACCAC
GCCGACATTCTCGAGCAGCAACGCCACCAACCGCCCTTCTTTTTTGAACG
CCTACAACGCGAAGCAAGAGGACGATGACGACGAAGATAGGATGGGTCCC
GGGTTTCTACGCGGCCCCACGTCTTACAACTCCCCGACCACGCCTCTGTC
GTCGAGATCCGCCTCTCCGCCGCCGTCACCACCACGATCCCTCACCCCGC
GGCAACCCGCGGGGCCCCCTCCTGCGAGCCCCTGCGGGGCACCCAGGGGG
TTCAGAGCGGACGGGATTCTGCGGCGGTCGGCGCGAGACAGCGGCAGCAG
CACCACTGCCAGGGCGGGAGGGGATGGCGATGATGTCGCTGCTGTGCGGG
TGGGGGAGGTTCCTCCTTCGCCAGCGGGAACGACCGATGGGGTCGAGTGG
CCTGGGGTTAAGGTGAACAACGGGGGGGGGGGCACGCGGGCGCAATTGGC
TTCGCTGTTGGTGTGTGCTCTTCGTGTGTCTAGCCGCAGCAATCGTCGTA
GAATTTGTGCTTCGATGTTTAGCCCCGAGAGAACGCAGCATTGCTACACT
ACACGGCAACGTAAGAAGTAGGGCTGATTACACCCTGCGACACGAAGGTT
GCACGTACCACCGTACGTTTGCTGTGTTCCACACCAGAACGAAATCGATG
AGGAGAAGAAAAGACCTAAAGTTAGTTGCGCCCCGCGACGCCCTCTCCCC
TCCGTTGTTTGATTCGCGTCCTGTTGTTTTTACATCCCCGCGTCCCTCCC
CCCCCCCCCCCCTGCGAAGCACGTCGCCCAGTCGGCGGCAACCTCTCCCA
ACGGCGGAGGCGGCGGTATCTCCGCCTGTTCGTCACCAGCGCCGGTGAAA
CCGCCGCCACTTCCGCCGCACAACAGCAAGTTGCCTTCCAGTCTGCCGAT
CCCCCCGCCGGAGACTCCGCGGGCTCTAGAAGACGGCGGCGTTGACTCGA
CGACGACGACGGCGACGGCGTCGGCGTTCTCCTTTTCGCACGAGGCAACT
TCTACTAGTACCGCCGGAGTGTCTTCTTCGTCGTCGCCGCGGCCGCCTCC
TACCCCGCCCAGGGGTTTCCGCCCCGGAGAGGCGGCGTCATCGTCTCAAA
GGCTTGTCTCGTCGCCAACGTCGTCGTCGCCTGCTGCCGCTGCTTCGAGC
CCCGCTTCTCCACCGAGGGTGATGTCCTCGCCGCCGTCGTCCTCGTCGTT
GGCGCTGTCTCCCACCACCACCACCGCGACAACCTCCCCCGCCGCCCGTG
CCACCGCCGCCGCTGCCGCCGCTAGTCCCACCGAGGGCAAGGGGGCGGGC
GGGGCGGCGTCAAGTCTGGGCGCGGATGACCTGCCGACACCCCCGCCAAA
GATGTATTCCTCCAGACAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGC
AGCAGAGGTTCTCTTCGCAAAGGGGGAGTAGTTTCAAGGTTAAGTCGGGC
GGCGGCGGTAGCCCGGTAGTAGGGGGCGGTGGAAACGAGGACGCGATGGA
GTCGGACCTGGACTTCATCAGAGAGCTGACGCGCTACAGGAGCGGCGCCG
AACGAGCCGCTAGGAACGACGAGTGAGTTTGTCCGCCTTCTCTTGGTTGT
GTGTTGAATTACAAAACAAATTCCTCGCCTCTGCGAAGGATAAAGTTTAT
GTTGATCAAAAACGATTGCCCTCTCATGATGAAAAAAATTGCCCTCTCGT
TATTTTTCATGATGATGAAAAAAAATTGCCTCTCATTATTTCTCATGTTG
ATCAAAAAAATTGCCCGATCGTTATTTGTTGTCATTTGTCGATGGAAGCG
TGCCGATATATTTACGGGGTGCGCTACATATCTGGACAGAAAAGGTTCGT
TGTCTACGTTCCTGAAAAAAGTGTCTGTTCCATAGCTATACATATTGAGA
GATGATACGTATTTTTTTCGGTTTCCCACGGCAGGTACGAGTTCGCTCTC
GTCTTGAACCCAAACGACGAGTACCGGGATGCGGTGGAGGTGCTCGAGCT
TGCCCTCGACCTCGGGGATGGAGGGGGAGGGGTCACGACCAGCCCGCAGA
AGCTGGACAAGGCGAAGCGGGTGAGGGAGAGCCTCGGGGGGCTTCAAGAG
CAGCAGCAGCAGCAGCAACAGCAACGCTCTTCTCCCGACCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17376:306..2497-

>mRNA_Ecto-sp13_S_contig17376.5191.1 ID=mRNA_Ecto-sp13_S_contig17376.5191.1|Name=mRNA_Ecto-sp13_S_contig17376.5191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17376:306..2497- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGACAGAAAGCCTCCAGGCCCGCAGAGGAGAAGACTCCGACACCAC
GCCGACATTCTCGAGCAGCAACGCCACCAACCGCCCTTCTTTTTTGAACG
CCTACAACGCGAAGCAAGAGGACGATGACGACGAAGATAGGATGGGTCCC
GGGTTTCTACGCGGCCCCACGTCTTACAACTCCCCGACCACGCCTCTGTC
GTCGAGATCCGCCTCTCCGCCGCCGTCACCACCACGATCCCTCACCCCGC
GGCAACCCGCGGGGCCCCCTCCTGCGAGCCCCTGCGGGGCACCCAGGGGG
TTCAGAGCGGACGGGATTCTGCGGCGGTCGGCGCGAGACAGCGGCAGCAG
CACCACTGCCAGGGCGGGAGGGGATGGCGATGATGTCGCTGCTGTGCGGG
TGGGGGAGGTTCCTCCTTCGCCAGCGGGAACGACCGATGGGGTCGAGTGG
CCTGGGGTTAAGCACGTCGCCCAGTCGGCGGCAACCTCTCCCAACGGCGG
AGGCGGCGGTATCTCCGCCTGTTCGTCACCAGCGCCGGTGAAACCGCCGC
CACTTCCGCCGCACAACAGCAAGTTGCCTTCCAGTCTGCCGATCCCCCCG
CCGGAGACTCCGCGGGCTCTAGAAGACGGCGGCGTTGACTCGACGACGAC
GACGGCGACGGCGTCGGCGTTCTCCTTTTCGCACGAGGCAACTTCTACTA
GTACCGCCGGAGTGTCTTCTTCGTCGTCGCCGCGGCCGCCTCCTACCCCG
CCCAGGGGTTTCCGCCCCGGAGAGGCGGCGTCATCGTCTCAAAGGCTTGT
CTCGTCGCCAACGTCGTCGTCGCCTGCTGCCGCTGCTTCGAGCCCCGCTT
CTCCACCGAGGGTGATGTCCTCGCCGCCGTCGTCCTCGTCGTTGGCGCTG
TCTCCCACCACCACCACCGCGACAACCTCCCCCGCCGCCCGTGCCACCGC
CGCCGCTGCCGCCGCTAGTCCCACCGAGGGCAAGGGGGCGGGCGGGGCGG
CGTCAAGTCTGGGCGCGGATGACCTGCCGACACCCCCGCCAAAGATGTAT
TCCTCCAGACAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGAG
GTTCTCTTCGCAAAGGGGGAGTAGTTTCAAGGTTAAGTCGGGCGGCGGCG
GTAGCCCGGTAGTAGGGGGCGGTGGAAACGAGGACGCGATGGAGTCGGAC
CTGGACTTCATCAGAGAGCTGACGCGCTACAGGAGCGGCGCCGAACGAGC
CGCTAGGAACGACGAGTACGAGTTCGCTCTCGTCTTGAACCCAAACGACG
AGTACCGGGATGCGGTGGAGGTGCTCGAGCTTGCCCTCGACCTCGGGGAT
GGAGGGGGAGGGGTCACGACCAGCCCGCAGAAGCTGGACAAGGCGAAGCG
GGTGAGGGAGAGCCTCGGGGGGCTTCAAGAGCAGCAGCAGCAGCAGCAAC
AGCAACGCTCTTCTCCCGACCGC
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