mRNA_Ecto-sp13_S_contig17353.5181.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17353.5181.1
Unique NamemRNA_Ecto-sp13_S_contig17353.5181.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17353.5181.1 vs. uniprot
Match: A0A6H5K5T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T9_9PHAE)

HSP 1 Score: 467 bits (1201), Expect = 1.960e-162
Identity = 261/300 (87.00%), Postives = 267/300 (89.00%), Query Frame = 3 
Query:   87 MTNQANPRQKRKATKXXXXXXXXXXXXXXXXVPEADPIQEYWSRKISPGKRRVEFKGGGPGGVTVLRKDVPKFWRTVKNRKGVCCVYFVKGERHFLTMVSEKELNKMKGTIGNLEMTNHAKTLAYGIKAAKKRKGVPNFSVVDACFGFWFDVCKDSGVEFKWKSCANYFNTGSGQSTRQLATKQEKSLLAALDTVSAIPKDSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPIEVRIVGKRIKVFWEEFNRWYRGKVVKFSHGMHLIYYDDGDKASHALKNEKWKVVG 986
            MT QANPR+K K TK                VPEADPIQEYWSRKISPGKRRVEFKGGGPGGVTVLRKDVPK WRTVKNRKGVCCVYFVKGERHFLTMVSEKELNK+KGTIG+LEMTNHAKTLAYG+KAAKKRKGVPNFSVVDACFGFWFDVCKDSGVEFKWKSCANYFNTGSG+STRQLA KQEKSLLAALDTVSAIPKDSEPXXXXXXXXXXXXXXX          XXXXXXXXXXXXX P EVRIVGKRIKVFWEEFNRWYRGKVVKFS+GMHLIYYDDGDKASHALKNEKWKVVG
Sbjct:    1 MTKQANPRKKHKTTKAKAWANKKATPRPRPRVPEADPIQEYWSRKISPGKRRVEFKGGGPGGVTVLRKDVPKSWRTVKNRKGVCCVYFVKGERHFLTMVSEKELNKIKGTIGSLEMTNHAKTLAYGMKAAKKRKGVPNFSVVDACFGFWFDVCKDSGVEFKWKSCANYFNTGSGRSTRQLAKKQEKSLLAALDTVSAIPKDSEPXXXXXXXXXXXXXXXSVINLSEESSXXXXXXXXXXXXXEPFEVRIVGKRIKVFWEEFNRWYRGKVVKFSNGMHLIYYDDGDKASHALKNEKWKVVG 300
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BLAST of mRNA_Ecto-sp13_S_contig17353.5181.1 vs. uniprot
Match: D8LEB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB9_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.330e-58
Identity = 115/205 (56.10%), Postives = 124/205 (60.49%), Query Frame = 3 
Query:   87 MTNQANPRQKRKATKXXXXXXXXXXXXXXXXVPEADPIQEYWSRKISP--GKRRVEFKGGGPGGVTVLRKDVPKFWRTVKNRKGVCCVYFVKGERHFLTMVSEKELNKMKGTIGNLEMTNHAKTLAYGIKAAKKRKGVPNFSVVDACFGFWFDVCKDSGVEFKWKSCANYFNTGSGQSTRQLATKQEKSLLAALDTVSAIPKDSE 695
            MT QANPR K KA K                VPEADPIQEYWSR ISP  G   V+FKGGGPGGVTVLRKDVP+ WR V NRK                                                AKKRKGVPNFSVVDACFGFWFDVCKD G+E+K+KSCANYFN G+G++TRQLA +QEKSLLAAL TVSAIPKDSE
Sbjct:    1 MTKQANPRNKPKAEKAAKKKFTTRPRNR---VPEADPIQEYWSRIISPRDGHVEVQFKGGGPGGVTVLRKDVPRLWRNVNNRK------------------------------------------------AKKRKGVPNFSVVDACFGFWFDVCKDDGLEYKFKSCANYFNDGTGRTTRQLAKEQEKSLLAALHTVSAIPKDSE 154
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BLAST of mRNA_Ecto-sp13_S_contig17353.5181.1 vs. uniprot
Match: A0A5K1GN35_9MAGN (Uncharacterized protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GN35_9MAGN)

HSP 1 Score: 58.2 bits (139), Expect = 1.980e-5
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  825 VRIVGKRIKVFWEEFNRWYRGKVVKFSHG--MHLIYYDDGDKASHALKNEKWKV 980
            +RIVG+R+KV+W    +WY G VV F H   +H I YDDG++    L+NEK++V
Sbjct:  121 IRIVGRRVKVYWPLDRKWYAGHVVSFEHDKKIHQIRYDDGEEEWLVLENEKFEV 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17353.5181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5T9_9PHAE1.960e-16287.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEB9_ECTSI1.330e-5856.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5K1GN35_9MAGN1.980e-548.15Uncharacterized protein (Fragment) n=2 Tax=Nymphae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17353contigEcto-sp13_S_contig17353:467..2306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score67.4
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D7FW47
Preferred nameMSH6
Model size1211
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000075,GO:0000077,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0000785,GO:0000790,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007568,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008284,GO:0008340,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0010972,GO:0012501,GO:0012505,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019724,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030888,GO:0030890,GO:0030983,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032875,GO:0032876,GO:0032944,GO:0032946,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035064,GO:0035556,GO:0035639,GO:0036094,GO:0036297,GO:0042113,GO:0042127,GO:0042393,GO:0042623,GO:0043085,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045190,GO:0045191,GO:0045321,GO:0045786,GO:0045830,GO:0045910,GO:0045911,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050670,GO:0050671,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051094,GO:0051095,GO:0051096,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070663,GO:0070665,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0140030,GO:0140034,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990391,GO:2000026,GO:2000104,GO:2000112,GO:2000113
Exons3
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0249@1,KOG0217@2759
Cds size903
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.599245-UTR-Ecto-sp13_S_contig17353:466..5521681462905.599245-UTR-Ecto-sp13_S_contig17353:466..552Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17353 467..552 +
1681462905.6394577-UTR-Ecto-sp13_S_contig17353:2084..23061681462905.6394577-UTR-Ecto-sp13_S_contig17353:2084..2306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17353 2085..2306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.610168-CDS-Ecto-sp13_S_contig17353:552..10211681462905.610168-CDS-Ecto-sp13_S_contig17353:552..1021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17353 553..1021 +
1681462905.6187506-CDS-Ecto-sp13_S_contig17353:1225..16411681462905.6187506-CDS-Ecto-sp13_S_contig17353:1225..1641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17353 1226..1641 +
1681462905.6280136-CDS-Ecto-sp13_S_contig17353:2066..20841681462905.6280136-CDS-Ecto-sp13_S_contig17353:2066..2084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17353 2067..2084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17353.5181.1prot_Ecto-sp13_S_contig17353.5181.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17353 553..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17353.5181.1

>prot_Ecto-sp13_S_contig17353.5181.1 ID=prot_Ecto-sp13_S_contig17353.5181.1|Name=mRNA_Ecto-sp13_S_contig17353.5181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MTNQANPRQKRKATKAKARANKNATPRPRPRVPEADPIQEYWSRKISPGK
RRVEFKGGGPGGVTVLRKDVPKFWRTVKNRKGVCCVYFVKGERHFLTMVS
EKELNKMKGTIGNLEMTNHAKTLAYGIKAAKKRKGVPNFSVVDACFGFWF
DVCKDSGVEFKWKSCANYFNTGSGQSTRQLATKQEKSLLAALDTVSAIPK
DSEPDSEIDSESDSESDSGSVIDLSDESSSEESDSASDSESDGPIEVRIV
GKRIKVFWEEFNRWYRGKVVKFSHGMHLIYYDDGDKASHALKNEKWKVVG
*
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mRNA from alignment at Ecto-sp13_S_contig17353:467..2306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17353.5181.1 ID=mRNA_Ecto-sp13_S_contig17353.5181.1|Name=mRNA_Ecto-sp13_S_contig17353.5181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17353:467..2306+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTCGCTTCTCGCTCCACGGAAACGATTGTGGTTTTCGCAGACCAG
ACTGATTTGAGCGTGGGACTTGTCCGACAAACGAAGATGACGAACCAAGC
TAATCCCCGGCAAAAGCGCAAGGCTACAAAGGCGAAGGCGCGCGCGAACA
AAAATGCCACACCACGCCCGCGACCTCGCGTGCCCGAGGCCGATCCCATC
CAAGAGTATTGGTCAAGGAAGATCTCCCCCGGAAAACGCAGAGTCGAGTT
CAAAGGAGGCGGACCCGGAGGAGTCACTGTCCTACGCAAGGATGTACCCA
AGTTCTGGAGAACCGTGAAGAACAGAAAAGGTGTATGCTGCGTCTACTTC
GTCAAGGGCGAGCGACACTTCCTGACGATGGTTTCGGAGAAGGAGTTGAA
CAAGATGAAGGGCACGATCGGCAACTTAGAGATGACCAACCACGCCAAGA
CTCTTGCCTACGGAATCAAGGCGGCGAAGAAGAGGAAGGGTGTGCCCAAC
TTCAGCGTGGTGGACGCCTGCTTCGGGTTCTGGTTTGACGTGTGCAAGGA
CAGCGGTGCGTGAAAGGCATGCTACCGTTGCTGACGCAGCGCACGGCCCC
CGCCGTGGCACTAACGCAATTGCCTGGCGTAAATCACACGCGCCGGGAAT
CCTGTACTTCGCCCATCGGACATACCCTGCGGCATGCACTCACCTGACAC
GTTGTTCGTCCGCTATTCGTCGTTTTGCCGGGAACCCTGTGTACCGCCGG
CCGACTCAGGTGTGGAGTTCAAGTGGAAGTCCTGCGCCAACTACTTCAAC
ACCGGTTCGGGACAATCAACTCGTCAACTCGCGACGAAACAGGAGAAGAG
CCTGTTGGCCGCTCTCGACACGGTGTCTGCGATTCCCAAAGACAGCGAGC
CCGACAGCGAGATCGACAGCGAGTCCGACAGCGAGTCCGACAGCGGCTCT
GTGATCGACCTCAGTGACGAGTCCAGCAGTGAGGAATCCGACAGTGCGAG
CGACAGCGAGAGCGACGGGCCTATCGAGGTGAGGATTGTGGGGAAGCGGA
TCAAGGTCTTCTGGGAGGAGTTCAACAGGTGGTACCGCGGCAAGGTCGTC
AAGTTCTCCCACGGCATGCACCTTATCTACTACGACGACGGAGACAAGGC
TTCGCATGCGCTGAAGAACGAAAAGGTGCGTTGAATATTGAGCAAACACT
CCTCAGATCATCCTAATCTTGACGCTTAGAGAAGGCCTGGGTGGTTTACG
AAGTCACGGGTCGATATAATATGCCAGACCATTCTTACAGGTGAACAATA
AATTGCTTGTTGAACATCGCGGACTTGAGCATGTGACCCTCGTCAAACGT
TTTGCAGAAATCGGGGCGTGGGTTCATATGGTTCGGGGTAACCGCAAAGA
ATGACTCTGTGCAATATTTCGTACTGGGTCAGTTTTGGACGCGCGCTTGT
GGCTAGAGTCCACTTTGTCTCGCCTTGCATCCTGAACGAGGGGCGAGGTG
CTCCTGTTTAGAACGGATTTCCTGTCGTGTACTGTGTGAAAGGAACATTA
GCAGTTTCTCATTCCCCGCTCCCATTGTCTCTTACACGCTAATCGTCCAG
TGGAAGGTGGTGGGATAGGACCCCAGCATGGGCACCGTCGGCCGGGCAAG
GTCGCCAAAACTGCAGTGAGGTCTCGCAGCAACAGGCGCGGCTGCGCATG
CTGCGGGTGCAATCCAAGGCGTGGCACGAAACAGACAACAGCGTGTGGTG
CAGTCGTCGTTTGGAGATGGCGGCAGACAAAGAATTACGCAGGATGTGAC
TCATCCTCGTGTTGCTGGCTATGTTGATGATCCGAGGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17353:467..2306+

>mRNA_Ecto-sp13_S_contig17353.5181.1 ID=mRNA_Ecto-sp13_S_contig17353.5181.1|Name=mRNA_Ecto-sp13_S_contig17353.5181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17353:467..2306+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAACCAAGCTAATCCCCGGCAAAAGCGCAAGGCTACAAAGGCGAA
GGCGCGCGCGAACAAAAATGCCACACCACGCCCGCGACCTCGCGTGCCCG
AGGCCGATCCCATCCAAGAGTATTGGTCAAGGAAGATCTCCCCCGGAAAA
CGCAGAGTCGAGTTCAAAGGAGGCGGACCCGGAGGAGTCACTGTCCTACG
CAAGGATGTACCCAAGTTCTGGAGAACCGTGAAGAACAGAAAAGGTGTAT
GCTGCGTCTACTTCGTCAAGGGCGAGCGACACTTCCTGACGATGGTTTCG
GAGAAGGAGTTGAACAAGATGAAGGGCACGATCGGCAACTTAGAGATGAC
CAACCACGCCAAGACTCTTGCCTACGGAATCAAGGCGGCGAAGAAGAGGA
AGGGTGTGCCCAACTTCAGCGTGGTGGACGCCTGCTTCGGGTTCTGGTTT
GACGTGTGCAAGGACAGCGGTGTGGAGTTCAAGTGGAAGTCCTGCGCCAA
CTACTTCAACACCGGTTCGGGACAATCAACTCGTCAACTCGCGACGAAAC
AGGAGAAGAGCCTGTTGGCCGCTCTCGACACGGTGTCTGCGATTCCCAAA
GACAGCGAGCCCGACAGCGAGATCGACAGCGAGTCCGACAGCGAGTCCGA
CAGCGGCTCTGTGATCGACCTCAGTGACGAGTCCAGCAGTGAGGAATCCG
ACAGTGCGAGCGACAGCGAGAGCGACGGGCCTATCGAGGTGAGGATTGTG
GGGAAGCGGATCAAGGTCTTCTGGGAGGAGTTCAACAGGTGGTACCGCGG
CAAGGTCGTCAAGTTCTCCCACGGCATGCACCTTATCTACTACGACGACG
GAGACAAGGCTTCGCATGCGCTGAAGAACGAAAAGTGGAAGGTGGTGGGA
TAG
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