mRNA_Ecto-sp13_S_contig1733.5174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: D7FUQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ1_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.130e-36 Identity = 74/106 (69.81%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 64 QVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFE----AGLSSPIRAEDEGCSAFPLPSRTRARVARDLGGICA 369
+V PGP+EALWKL RR PVA QPK EGA VGSVK RPRRG AAGS++ERLPRRPAA+SVV R F+ G P GCSAFPLPSRTRARVARDLGG CA
Sbjct: 212 EVWPGPEEALWKLRRRLPVAAQPKLEGARVGSVKPRPRRGRAAGSIEERLPRRPAARSVVYLRTFKDTAKRGFLHPFVRRKRGCSAFPLPSRTRARVARDLGGNCA 317
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5KEJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ2_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.030e-28 Identity = 76/170 (44.71%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 1 EERLSRRPAARSVAYRRAFE--------------------------------------------------------------VQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFEAGLSS---PIRAEDEGCSAFP 315
EERLSRRPAARSV YRRAFE ++VGPGP+EALWKL RRPPVAPQPKSEGA VGSVK RPRRG AAGSM+ERLPRRPA +SV+ R FE G + + E+E P
Sbjct: 182 EERLSRRPAARSVVYRRAFEGGAGTGGGSVEIGPPQPKSEGARVGSVKPSRANGPGGGGRRAACRRGSCGGPWSEAWSTGGLLKVGPGPEEALWKLRRRPPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYGRTFEGGAGTGGDSVEIEEEATGGAP 351
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: D7FMZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ2_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.580e-26 Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 1 EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFEAGLSSPIRAEDEGCSAFPLPSRTR 333
EERL RRP R V +AFE VGPGP+E LWKL R PPVAP+ + EGA +GS+K RPRRG AG M+ERL RRP +SVV RR FE GL+ R+ G F +P+ R
Sbjct: 2 EERLLRRPTVRRVLSLKAFEKWVGPGPEEPLWKLRRTPPVAPRRELEGARLGSIKPRPRRGPVAGRMEERLSRRPVTRSVVYRRAFE-GLAFITRSCG-GRGLFGVPATLR 110
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JP68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP68_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.210e-19 Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 3
Query: 66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
GGA T GGSVEIE EAT GAPAEVGGG GG GQAQAE+G GGGQHG EAPA+ARGQKR LPE F
Sbjct: 276 GGAETGGGSVEIEKEATSGAPAEVGGGEGGFGQAQAEEGAGGGQHGGEAPAEARGQKRNLPEGF 339
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ9_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.390e-18 Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 3
Query: 66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
GGAGT GGS+EIE EAT GAPAEV GG GGVGQAQAE+G GGGQHG EA A+ARGQ+R L EDF
Sbjct: 182 GGAGTRGGSLEIEEEATRGAPAEVIGGEGGVGQAQAEEGAGGGQHGGEASAEARGQRRALREDF 245
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 7.090e-15 Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFE 261
EERLSRRPAARSV YRRAFE G G + E A VGSVK RPRRG AAGSM+ERLPRRP +S++ R E
Sbjct: 18 EERLSRRPAARSVVYRRAFEGGAGTGGGSVEIE-------------EAARVGSVKPRPRRGGAAGSMEERLPRRPVVRSMLHLRASE 91
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JRC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 8.740e-14 Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 3
Query: 264 RAFFTHSCGGRGVFGVPAPLENKGESGTRPWRHLRLSAS 380
RAF T SCGGRGVFGVPAPLENKGESGTRPW LRL+AS
Sbjct: 199 RAFVTRSCGGRGVFGVPAPLENKGESGTRPWWQLRLNAS 237
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.750e-12 Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 3
Query: 66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
GGAGT GGSVEIE EATG AP EVG GGVGQAQAE G GGGQHG EA +AR +KRGLP+ +
Sbjct: 53 GGAGTVGGSVEIE-EATGVAPVEVGRDEGGVGQAQAEDGAGGGQHGGEASTEARRRKRGLPKVY 115
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JP41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP41_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 5.960e-11 Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = 3
Query: 66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
GGA T GGSVEIE EATGG PA VG GVGGGQHG EAPA+ARGQKR LPE F
Sbjct: 53 GGARTGGGSVEIEEEATGGDPAYVGXXXXXXXXXXXXXGVGGGQHGREAPAEARGQKRALPEVF 116
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.710e-9 Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 259 EAGLSSPIRAEDEGCSAFPLPSRTRARVARDLGGICA 369
+AGLSSP+RAE EGCSA PLPSRTRA V RDLGG CA
Sbjct: 201 QAGLSSPVRAEKEGCSASPLPSRTRATVTRDLGGNCA 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1733.5174.1 >prot_Ecto-sp13_S_contig1733.5174.1 ID=prot_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAWback to top mRNA from alignment at Ecto-sp13_S_contig1733:2060..3056+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1733.5174.1 ID=mRNA_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1733:2060..3056+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1733:2060..3056+ >mRNA_Ecto-sp13_S_contig1733.5174.1 ID=mRNA_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1733:2060..3056+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |