mRNA_Ecto-sp13_S_contig1733.5174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1733.5174.1
Unique NamemRNA_Ecto-sp13_S_contig1733.5174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: D7FUQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.130e-36
Identity = 74/106 (69.81%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   64 QVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFE----AGLSSPIRAEDEGCSAFPLPSRTRARVARDLGGICA 369
            +V PGP+EALWKL RR PVA QPK EGA VGSVK RPRRG AAGS++ERLPRRPAA+SVV  R F+     G   P      GCSAFPLPSRTRARVARDLGG CA
Sbjct:  212 EVWPGPEEALWKLRRRLPVAAQPKLEGARVGSVKPRPRRGRAAGSIEERLPRRPAARSVVYLRTFKDTAKRGFLHPFVRRKRGCSAFPLPSRTRARVARDLGGNCA 317          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5KEJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.030e-28
Identity = 76/170 (44.71%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    1 EERLSRRPAARSVAYRRAFE--------------------------------------------------------------VQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFEAGLSS---PIRAEDEGCSAFP 315
            EERLSRRPAARSV YRRAFE                                                              ++VGPGP+EALWKL RRPPVAPQPKSEGA VGSVK RPRRG AAGSM+ERLPRRPA +SV+  R FE G  +    +  E+E     P
Sbjct:  182 EERLSRRPAARSVVYRRAFEGGAGTGGGSVEIGPPQPKSEGARVGSVKPSRANGPGGGGRRAACRRGSCGGPWSEAWSTGGLLKVGPGPEEALWKLRRRPPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYGRTFEGGAGTGGDSVEIEEEATGGAP 351          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: D7FMZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.580e-26
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFEAGLSSPIRAEDEGCSAFPLPSRTR 333
            EERL RRP  R V   +AFE  VGPGP+E LWKL R PPVAP+ + EGA +GS+K RPRRG  AG M+ERL RRP  +SVV RR FE GL+   R+   G   F +P+  R
Sbjct:    2 EERLLRRPTVRRVLSLKAFEKWVGPGPEEPLWKLRRTPPVAPRRELEGARLGSIKPRPRRGPVAGRMEERLSRRPVTRSVVYRRAFE-GLAFITRSCG-GRGLFGVPATLR 110          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JP68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP68_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.210e-19
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
            GGA T GGSVEIE EAT GAPAEVGGG GG GQAQAE+G GGGQHG EAPA+ARGQKR LPE F
Sbjct:  276 GGAETGGGSVEIEKEATSGAPAEVGGGEGGFGQAQAEEGAGGGQHGGEAPAEARGQKRNLPEGF 339          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.390e-18
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
            GGAGT GGS+EIE EAT GAPAEV GG GGVGQAQAE+G GGGQHG EA A+ARGQ+R L EDF
Sbjct:  182 GGAGTRGGSLEIEEEATRGAPAEVIGGEGGVGQAQAEEGAGGGQHGGEASAEARGQRRALREDF 245          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.090e-15
Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAWVGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFE 261
            EERLSRRPAARSV YRRAFE   G G      +             E A VGSVK RPRRG AAGSM+ERLPRRP  +S++  R  E
Sbjct:   18 EERLSRRPAARSVVYRRAFEGGAGTGGGSVEIE-------------EAARVGSVKPRPRRGGAAGSMEERLPRRPVVRSMLHLRASE 91          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JRC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.740e-14
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 3
Query:  264 RAFFTHSCGGRGVFGVPAPLENKGESGTRPWRHLRLSAS 380
            RAF T SCGGRGVFGVPAPLENKGESGTRPW  LRL+AS
Sbjct:  199 RAFVTRSCGGRGVFGVPAPLENKGESGTRPWWQLRLNAS 237          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.750e-12
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
            GGAGT GGSVEIE EATG AP EVG   GGVGQAQAE G GGGQHG EA  +AR +KRGLP+ +
Sbjct:   53 GGAGTVGGSVEIE-EATGVAPVEVGRDEGGVGQAQAEDGAGGGQHGGEASTEARRRKRGLPKVY 115          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JP41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP41_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.960e-11
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   66 GGAGTEGGSVEIEPEATGGAPAEVGGGVGGVGQAQAEKGVGGGQHG*EAPAKARGQKRGLPEDF 257
            GGA T GGSVEIE EATGG PA VG             GVGGGQHG EAPA+ARGQKR LPE F
Sbjct:   53 GGARTGGGSVEIEEEATGGDPAYVGXXXXXXXXXXXXXGVGGGQHGREAPAEARGQKRALPEVF 116          
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Match: A0A6H5JIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.710e-9
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1
Query:  259 EAGLSSPIRAEDEGCSAFPLPSRTRARVARDLGGICA 369
            +AGLSSP+RAE EGCSA PLPSRTRA V RDLGG CA
Sbjct:  201 QAGLSSPVRAEKEGCSASPLPSRTRATVTRDLGGNCA 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1733.5174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FUQ1_ECTSI1.130e-3669.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEJ2_9PHAE1.030e-2844.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMZ2_ECTSI1.580e-2655.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP68_9PHAE2.210e-1981.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNQ9_9PHAE4.390e-1878.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0N7_9PHAE7.090e-1555.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRC9_9PHAE8.740e-1487.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF72_9PHAE2.750e-1271.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JP41_9PHAE5.960e-1165.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIQ0_9PHAE2.710e-981.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1733contigEcto-sp13_S_contig1733:2060..3056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size415
Hectar predicted targeting categoryother localisation
Exons3
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.23008-CDS-Ecto-sp13_S_contig1733:2059..21201681462905.23008-CDS-Ecto-sp13_S_contig1733:2059..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1733 2060..2120 +
1681462905.239839-CDS-Ecto-sp13_S_contig1733:2519..27191681462905.239839-CDS-Ecto-sp13_S_contig1733:2519..2719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1733 2520..2719 +
1681462905.2498627-CDS-Ecto-sp13_S_contig1733:2902..30131681462905.2498627-CDS-Ecto-sp13_S_contig1733:2902..3013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1733 2903..3013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.2635524-UTR-Ecto-sp13_S_contig1733:3013..30561681462905.2635524-UTR-Ecto-sp13_S_contig1733:3013..3056Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1733 3014..3056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1733.5174.1prot_Ecto-sp13_S_contig1733.5174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1733 2060..3013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1733.5174.1

>prot_Ecto-sp13_S_contig1733.5174.1 ID=prot_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
EERLSRRPAARSVAYRRAFEVQVGPGPKEALWKLSRRPPVAPQPKSEGAW
VGSVKLRPRRGWAAGSMDERLPRRPAAKSVVCRRIFEAGLSSPIRAEDEG
CSAFPLPSRTRARVARDLGGICA*
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mRNA from alignment at Ecto-sp13_S_contig1733:2060..3056+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1733.5174.1 ID=mRNA_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1733:2060..3056+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAGGCTCTCGCGGAGGCCCGCGGCCAGAAGCGTGGCCTACCGGAG GGCTTTTGAAGGTGTGTTTGGTGTTTATTGAAGTAGTCTGGCTTCGCTCC CCGTTCCCGGATAAGCGGTGGGAAACGCAGTCTACCACCGGACTTGTGAC GTTGTGTTTTGTTACGATATCTCATTGCAGGTGGGGCCGGGAGGAGGCTC TGTGAAAATTGACCGGTGGCGCCCAGCCGAAGTCGGAGGGGGCGAGGGTG GGGTCGGTCAAGCCCAGGCCGAGGAGGGGGTGGGCGGTGGGCGGCATGGA GGAGAGGCTCTCGCCGGGGCCCGTGGTTAGGAGCGTGGTCTACCGGAGGG CTTTTGAAGGTGTGTTTTGTTTATTTTTAGGCTTCTACAGGCAGCTGGCC TCGCTCCCCGCTCCCGGATAAGCGGTCGGACTTGACAGTGTGTTTTTTAC GATATCTCAGTGCAGGTGGGGCCGGGACCGAAGGAGGCTCTGTGGAAATT GAGCCGGAGGCCACCGGTGGCGCCCCAGCCGAAGTCGGAGGGGGCGTGGG TGGGGTCGGTCAAGCTCAGGCCGAGAAGGGGGTGGGCGGCGGGCAGCATG GATGAGAGGCTCCCGCGAAGGCCCGCGGCCAAAAGCGTGGTCTGCCGGAG GATTTTTGAAGTTGTATTTTTGTTTATTTCGTAGCTTTTACAGGCAGCTG GCCTTGCCTCCCCGCTCCCGGATAAGCAGTCGGAACTGAAGTCTACCACC GGACGGTGTATGTTTGTACGATATATCACTGCACAAACTTAAATTGTAAT ACCCCACCGCCCCCAATATTTCCCGCCCCAGAAATGTTGCCAGGCCGGGC TTTCTTCACCCATTCGTGCGGAGGACGAGGGGTGTTCGGCGTTCCCGCTC CCCTCGAGAACAAGGGCGAGAGTGGCACGAGACCTTGGCGGCATCTGCGC CTGAGCGCCAGCCGCAAATACTGCAGCGGGGGCAGCACGGGCGGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1733:2060..3056+

>mRNA_Ecto-sp13_S_contig1733.5174.1 ID=mRNA_Ecto-sp13_S_contig1733.5174.1|Name=mRNA_Ecto-sp13_S_contig1733.5174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1733:2060..3056+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAGGCTCTCGCGGAGGCCCGCGGCCAGAAGCGTGGCCTACCGGAG
GGCTTTTGAAGTGCAGGTGGGGCCGGGACCGAAGGAGGCTCTGTGGAAAT
TGAGCCGGAGGCCACCGGTGGCGCCCCAGCCGAAGTCGGAGGGGGCGTGG
GTGGGGTCGGTCAAGCTCAGGCCGAGAAGGGGGTGGGCGGCGGGCAGCAT
GGATGAGAGGCTCCCGCGAAGGCCCGCGGCCAAAAGCGTGGTCTGCCGGA
GGATTTTTGAAGCCGGGCTTTCTTCACCCATTCGTGCGGAGGACGAGGGG
TGTTCGGCGTTCCCGCTCCCCTCGAGAACAAGGGCGAGAGTGGCACGAGA
CCTTGGCGGCATCTGCGCCTGA
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