mRNA_Ecto-sp13_S_contig17323.5172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17323.5172.1
Unique NamemRNA_Ecto-sp13_S_contig17323.5172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17323.5172.1 vs. uniprot
Match: A0A6H5JDW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW9_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 7.300e-120
Identity = 217/243 (89.30%), Postives = 220/243 (90.53%), Query Frame = 1 
Query:  157 RNAGAATATASGTPSVLE------------AVSPNVVGTPETTEGGGAMGDTVFINEAVGKPPEVYNDADNSDESIIDVGEEVDMGEEKDWMAAASPMPKTPNAASIGEVFAMTPAAAGHEEPVQDFVGEGGTTEVEQEHSENFGSFSGESSSGADTGALHRYGVYDLAGGGAAAATGTNENASSRGSGGDATTPGVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD 849
            R+AGAATATASGTPSVLE            AVSPNVV TPETTEGGGAM DTVFINEAVGK PEVYNDADNSDESIIDVGEEVDM EEK+WMAAASPMP+ PNAASIGEVFAMTP AAGHEEPVQDFVGEGGTT VEQEHSENFGSFSGESSSGADTGALHRYGVYDLAGG AAAATGTNE ASSRGSGGDA T GVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD
Sbjct: 1159 RDAGAATATASGTPSVLEVNQGRAGVGLAEAVSPNVVATPETTEGGGAMDDTVFINEAVGKHPEVYNDADNSDESIIDVGEEVDMREEKNWMAAASPMPRMPNAASIGEVFAMTPTAAGHEEPVQDFVGEGGTTAVEQEHSENFGSFSGESSSGADTGALHRYGVYDLAGGEAAAATGTNEYASSRGSGGDAATSGVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD 1401
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BLAST of mRNA_Ecto-sp13_S_contig17323.5172.1 vs. uniprot
Match: D7FSW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW9_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 1.250e-110
Identity = 181/196 (92.35%), Postives = 184/196 (93.88%), Query Frame = 1 
Query:  265 MGDTVFINEAVGKPPEVYNDADNSDESIIDVGEEVDMGEEKDWMAAASPMPKTPNAASIGEVFAMTPAAAGHEEPVQDFVGEGGTTEVEQEHSE-NFGSFSGESSSGADTGALHRYGVYDLAGGGAAAATGTNENASSRGSGGDATTPGVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD 849
            M DTVFINEAVGKPPEVYNDADNSDESIIDVGEE DMG  KDWMAAASP P+TPNAASIGEVFAMTP AAGHEEP+QDFVGEGGT  VEQEHSE +FGSFSGESSSGADTGALHRYGVYDLAGG AAAATGTNE ASSRGSGGDA TPGVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD
Sbjct:    1 MDDTVFINEAVGKPPEVYNDADNSDESIIDVGEEADMGGGKDWMAAASPTPRTPNAASIGEVFAMTPMAAGHEEPMQDFVGEGGTAAVEQEHSEESFGSFSGESSSGADTGALHRYGVYDLAGGEAAAATGTNEYASSRGSGGDAATPGVFRSARSILTWKEDDEQEEGDAEREAEEVQALVAEALALVQEANADD 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17323.5172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDW9_9PHAE7.300e-12089.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSW9_ECTSI1.250e-11092.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17323contigEcto-sp13_S_contig17323:2199..3709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size852
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSer-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
Ec32 orthologEc-27_006670.1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.0653172-CDS-Ecto-sp13_S_contig17323:2198..28401681462905.0653172-CDS-Ecto-sp13_S_contig17323:2198..2840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17323 2199..2840 -
1681462905.0761054-CDS-Ecto-sp13_S_contig17323:3499..36821681462905.0761054-CDS-Ecto-sp13_S_contig17323:3499..3682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17323 3500..3682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.0863519-UTR-Ecto-sp13_S_contig17323:3682..37091681462905.0863519-UTR-Ecto-sp13_S_contig17323:3682..3709Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17323 3683..3709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17323.5172.1prot_Ecto-sp13_S_contig17323.5172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17323 2199..3682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17323.5172.1

>prot_Ecto-sp13_S_contig17323.5172.1 ID=prot_Ecto-sp13_S_contig17323.5172.1|Name=mRNA_Ecto-sp13_S_contig17323.5172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MAAATAAAEADAAAEDAAAKAVEAAVKAEKAAEQAAAARAASRRNAGAAT
ATASGTPSVLEAVSPNVVGTPETTEGGGAMGDTVFINEAVGKPPEVYNDA
DNSDESIIDVGEEVDMGEEKDWMAAASPMPKTPNAASIGEVFAMTPAAAG
HEEPVQDFVGEGGTTEVEQEHSENFGSFSGESSSGADTGALHRYGVYDLA
GGGAAAATGTNENASSRGSGGDATTPGVFRSARSILTWKEDDEQEEGDAE
REAEEVQALVAEALALVQEANADD*
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mRNA from alignment at Ecto-sp13_S_contig17323:2199..3709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17323.5172.1 ID=mRNA_Ecto-sp13_S_contig17323.5172.1|Name=mRNA_Ecto-sp13_S_contig17323.5172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17323:2199..3709- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCGTCTGAGGCCGCCCTAGCGGCGATGGCGGCGGCGACGGCTGCGGC
GGAGGCAGACGCGGCCGCTGAAGATGCAGCGGCAAAGGCAGTAGAAGCGG
CCGTTAAGGCAGAAAAGGCCGCGGAGCAGGCGGCGGCGGCGAGAGCAGCG
TCGCGGAGGAACGCAGGAGCTGCGACAGCGACCGCCTCGGGAACACCGTC
TGTGCTAGAGGTAAACCAGGCGACAAGCATAAATTTCTCCGCTGCCTTTG
TGTTGGTGGTCGGTCGTAGGATGGGGGTAGGCAGCAACGCCGCAGTTCGA
GTTGTGTTGAAGCGATTTGCCGTCTCAACGCGTTTGGTGGGGTACGCGAA
TGTTGTATCGTAACATCGCTGTGAGGTGTTACTACAGTGTACACTGCTTA
CGGCCTCCTCCCTGCCCGCAGAGAGAGCAGACTTGCTCTTCGCCTCCTCA
TTGAGTCGACAGTTTCCTTTTTCCGAGGTAGATAGCCGCTCCCTTGCACA
ACCACACCCGCTCGGACGGCGATCGACTCACGTGCTGCAACGCCACGATG
GACATGCTTCTCGATATCCTATCGATTGATGTCATGCTGCACATTCTTTG
CACATTCTTTGTATCATGCGTCGTTTTCAAACGCATAGTGTCTACAAACA
CCGAACCCCAACGCGCGTTTCAAATCGTCTGCTAGCACCTTGCCGATGCT
CTCCAATGCTCACCCTCCTCACACCGTCTTTACATGGTAGAACCCCCGTT
GGTTTTGATGAGGGGAACGCGACCGTTTTGCCGTCTTTCACCCCCTTGCT
TTCACGTCCTCACTGCCTCAGGACGACCTTGCTGTTGTACAGGGGAGCGC
TGGCGTTGGCTTGGCTGAGGCTGTTTCTCCGAACGTGGTGGGTACACCGG
AGACCACCGAAGGTGGTGGCGCTATGGGCGACACCGTTTTCATCAATGAG
GCGGTAGGAAAGCCCCCTGAGGTGTACAACGACGCCGACAACAGCGACGA
GAGTATCATCGACGTGGGGGAGGAGGTCGACATGGGGGAGGAAAAGGACT
GGATGGCGGCGGCGAGCCCCATGCCGAAGACGCCTAACGCTGCCAGCATT
GGCGAAGTCTTTGCGATGACCCCTGCGGCGGCCGGCCACGAAGAGCCCGT
GCAGGACTTTGTCGGAGAGGGTGGAACAACAGAAGTGGAGCAAGAACACT
CGGAAAACTTCGGTAGCTTCTCAGGCGAGTCATCCTCCGGGGCGGACACG
GGGGCTTTGCACCGTTATGGCGTCTACGATCTCGCGGGGGGGGGAGCTGC
TGCAGCAACAGGGACCAACGAGAACGCGTCTTCGCGAGGCAGCGGCGGCG
ACGCCACGACGCCCGGGGTTTTTCGGTCTGCCAGGAGCATCTTGACCTGG
AAGGAGGACGATGAGCAGGAGGAAGGGGACGCAGAACGGGAGGCGGAGGA
GGTACAAGCTCTCGTCGCCGAGGCGTTGGCGCTTGTTCAGGAAGCGAATG
CGGATGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17323:2199..3709-

>mRNA_Ecto-sp13_S_contig17323.5172.1 ID=mRNA_Ecto-sp13_S_contig17323.5172.1|Name=mRNA_Ecto-sp13_S_contig17323.5172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17323:2199..3709- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGGCGACGGCTGCGGCGGAGGCAGACGCGGCCGCTGAAGATGC
AGCGGCAAAGGCAGTAGAAGCGGCCGTTAAGGCAGAAAAGGCCGCGGAGC
AGGCGGCGGCGGCGAGAGCAGCGTCGCGGAGGAACGCAGGAGCTGCGACA
GCGACCGCCTCGGGAACACCGTCTGTGCTAGAGGCTGTTTCTCCGAACGT
GGTGGGTACACCGGAGACCACCGAAGGTGGTGGCGCTATGGGCGACACCG
TTTTCATCAATGAGGCGGTAGGAAAGCCCCCTGAGGTGTACAACGACGCC
GACAACAGCGACGAGAGTATCATCGACGTGGGGGAGGAGGTCGACATGGG
GGAGGAAAAGGACTGGATGGCGGCGGCGAGCCCCATGCCGAAGACGCCTA
ACGCTGCCAGCATTGGCGAAGTCTTTGCGATGACCCCTGCGGCGGCCGGC
CACGAAGAGCCCGTGCAGGACTTTGTCGGAGAGGGTGGAACAACAGAAGT
GGAGCAAGAACACTCGGAAAACTTCGGTAGCTTCTCAGGCGAGTCATCCT
CCGGGGCGGACACGGGGGCTTTGCACCGTTATGGCGTCTACGATCTCGCG
GGGGGGGGAGCTGCTGCAGCAACAGGGACCAACGAGAACGCGTCTTCGCG
AGGCAGCGGCGGCGACGCCACGACGCCCGGGGTTTTTCGGTCTGCCAGGA
GCATCTTGACCTGGAAGGAGGACGATGAGCAGGAGGAAGGGGACGCAGAA
CGGGAGGCGGAGGAGGTACAAGCTCTCGTCGCCGAGGCGTTGGCGCTTGT
TCAGGAAGCGAATGCGGATGATTGA
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