mRNA_Ecto-sp13_S_contig1729.5152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1729.5152.1
Unique NamemRNA_Ecto-sp13_S_contig1729.5152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.700e-22
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 3 
Query:    3 EMETEVILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTY 191
            E+ET+VILDDVNAVFKPS TTLVLGAPGSGKS       TLLKALAGLLKHDAGH+KKGSVTY
Sbjct:   82 EVETKVILDDVNAVFKPSTTTLVLGAPGSGKS-------TLLKALAGLLKHDAGHVKKGSVTY 137
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.080e-21
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:    3 EMETEVILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTY 191
            EMET+VILDDVNAVFKPS TTLVLGAPGSGKS       TLLK+LAGLLKHDAGH+ +GSVTY
Sbjct:  178 EMETKVILDDVNAVFKPSTTTLVLGAPGSGKS-------TLLKSLAGLLKHDAGHVNQGSVTY 233
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: D7FQM9_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.680e-15
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:    3 EMETEVILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTY 191
            EME + ILDDVNAVFKPS+TTLVLG PG GKS       TLLKA+AGLLK D GH+ +G +TY
Sbjct:   93 EMEAKTILDDVNAVFKPSSTTLVLGPPGCGKS-------TLLKAVAGLLKEDKGHVVEGRMTY 148
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: A0A4D9BY97_SALSN (ABC transporter domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BY97_SALSN)

HSP 1 Score: 52.0 bits (123), Expect = 2.010e-5
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   21 ILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTYC 194
            IL+DV+ + +PS  TL+LG PGSGK++       LLKALAG L+ D     KG +TYC
Sbjct:  196 ILNDVSGIVRPSRMTLLLGPPGSGKTI-------LLKALAGKLEEDL--RVKGRITYC 244
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: A0A8E6YIE3_SALMI (ABC transporter n=1 Tax=Salvia miltiorrhiza TaxID=226208 RepID=A0A8E6YIE3_SALMI)

HSP 1 Score: 50.8 bits (120), Expect = 5.200e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   21 ILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTYC 194
            IL DV+ + +P+  TL+LG PGSGK++       LLKALAG L+ D   + KG +TYC
Sbjct:  194 ILHDVSGIVRPARMTLLLGPPGSGKTI-------LLKALAGKLEEDL-RVCKGRITYC 243
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BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Match: A0A022PTV0_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PTV0_ERYGU)

HSP 1 Score: 50.4 bits (119), Expect = 7.090e-5
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   21 ILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKHDAGHMKKGSVTYC 194
            IL D++ V KPS  TL+LG PGSGK++       LLKALAG L +D      G++TYC
Sbjct:  193 ILHDISGVVKPSRMTLLLGPPGSGKTI-------LLKALAGKLDNDL--RVDGNITYC 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1729.5152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LFP2_ECTSI6.700e-2282.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI8.080e-2179.37Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQM9_ECTSI2.680e-1566.67ABC transporter domain-containing protein n=1 Tax=... [more]
A0A4D9BY97_SALSN2.010e-550.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8E6YIE3_SALMI5.200e-548.28ABC transporter n=1 Tax=Salvia miltiorrhiza TaxID=... [more]
A0A022PTV0_ERYGU7.090e-550.00Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1729contigEcto-sp13_S_contig1729:13376..15490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.4
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D8LFP2
Model size324
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
Cds size264
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1729.5152.1prot_Ecto-sp13_S_contig1729.5152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1729 13381..14509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.2232563-UTR-Ecto-sp13_S_contig1729:13375..133801681462903.2232563-UTR-Ecto-sp13_S_contig1729:13375..13380Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1729 13376..13380 +
1681462903.2807238-UTR-Ecto-sp13_S_contig1729:14509..145131681462903.2807238-UTR-Ecto-sp13_S_contig1729:14509..14513Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1729 14510..14513 +
1681462903.2881708-UTR-Ecto-sp13_S_contig1729:15439..154901681462903.2881708-UTR-Ecto-sp13_S_contig1729:15439..15490Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1729 15440..15490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.242652-CDS-Ecto-sp13_S_contig1729:13380..134701681462903.242652-CDS-Ecto-sp13_S_contig1729:13380..13470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1729 13381..13470 +
1681462903.2552607-CDS-Ecto-sp13_S_contig1729:13690..137831681462903.2552607-CDS-Ecto-sp13_S_contig1729:13690..13783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1729 13691..13783 +
1681462903.2720509-CDS-Ecto-sp13_S_contig1729:14428..145091681462903.2720509-CDS-Ecto-sp13_S_contig1729:14428..14509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1729 14429..14509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1729.5152.1

>prot_Ecto-sp13_S_contig1729.5152.1 ID=prot_Ecto-sp13_S_contig1729.5152.1|Name=mRNA_Ecto-sp13_S_contig1729.5152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
METEVILDDVNAVFKPSNTTLVLGAPGSGKSLGTNQQSTLLKALAGLLKH
DAGHMKKGSVTYCLCLQVQRGHQGVWNFFSAEGGGFS*
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mRNA from alignment at Ecto-sp13_S_contig1729:13376..15490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1729.5152.1 ID=mRNA_Ecto-sp13_S_contig1729.5152.1|Name=mRNA_Ecto-sp13_S_contig1729.5152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1729:13376..15490+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGATGGAGACCGAGGTCATCCTGGATGATGTCAACGCGGTGTTCAAG
CCGTCTAACACTACCCTCGTGCTCGGCGCGCCCGGCTCCGGCAAGGTGAA
CGAAGCCGCATCCTGAATCAGGATTCGCTCTACCAAGCCCTGTTTCTTCC
CCCACAAAAGGGTTCGGGATTGTCTCGCGCCGATGCTGTGTTGTCTGTGA
CGTCATTTCAGCTTGCTCGTGTGTTCATTTTACGCTAGAAACCGTTCTCT
AAGTAGAAAACGCACCTCGTGTCACCCATCCCCACCGCTGTTCCTAACGT
GTTTCCCACTTGCAGTCGTTGGGAACCAATCAGCAGTCGACTCTGCTCAA
GGCACTGGCAGGGCTGCTCAAGCACGACGCCGGGCACATGAAGAAGGGCA
GCGTAACGGTAAGCATGTCGTCGTGCTCGTGAAGTCATTCTCGACAGAAT
ATTAAACGGAAAAAAGTAACCTGGTGCAACTGTATTTTATCTCGAAGTAC
TTCCATTTTCTTGCAATAAACACCAGACACATCCTGTCCAAGGACGCTAC
TACAGGTTGATGTGATCCGAAACGACGTAAAAATGAGTTGGGATAAGAAT
CAAACAAGACAGAATAGGAAGCTGTTGAATCTGGATGAGGGGGGGGGAGG
AGCGGCTACGCAGGGACAAAGAACGATCACCTCATCTATGGCGGTGCTAT
TGGCTAAGCGATCTTGCGAAACATTTAGAGAACCACCGACCTGCTGAACC
TACCGTGAGTGGAGCAACCATCGTCCAGGGAGCTGGCAGGGCGTGTGCGC
GTCGCTATAGATGTACTACTGTTGGCGGACCGGTCCACCCTCGTGGAATC
TGCCAAACACGAATCAATCATTCTCGCAAGCGCTTTCCGATCTACTGCTG
TGGTGTCATGAAGCTCCCAACTAGAGTGTCATCAAGTCGAGCCGATCCCT
TCTACCGACCGTTTCAGTAGCCTCTCGCTCACGGCTGACCTGACAAATCG
CCCCCCCCCTTATCACCGTGATGGCCTCTTCCGTTTTTGCCTTTGCCTTC
AAGTACTGCCTTTGCCTTCAAGTACAACGGGGCCACCAAGGAGTCTGGAA
TTTTTTCTCTGCCGAAGGTGGCGGTTTCAGCTGAACAGGTCAGGCCGGCT
CGTCTCGACGTGTAGAACTGCAAAGCCCCTTGAAGTTTGTCTAGAGTGTG
CATGATTGATCCAACACCTCGCGCCCGCACTGGTTTCGGTCTGTGCCGCT
CGCTATCTCCATCAGCCCTATTGGCGATTTGCGCTCGAAGTGGCCAAATC
AAAACAACTTCTGACTGCCGTTCTTTCTGTCGGCGCTTGCCGAACGGAAA
AGGTACGTTGTGTGCGCGCGTAGCATCTCCTTCAGGGTTGGATTCGTACA
TCAAAGCTGAATCCGGGCAACGATTCTCCACAACACCGCTCTTTACACGT
GAAAAAGCCCATTCTCCGTCACCTCGAGCACCCAGAATGTTAATATTTCA
AGCAACGACCCTAGTCGTAGCCTATGTGGTCGTGCGGTTTCAGTTTCTTT
TTTTCCCGAGACCGAACCAACTAATTTACTGATTGTTTTGCTGGCAGGTC
CTCATCTACGAGGCACCTCAATAGGCTTCTACCTTGTCCATATTGGTTAA
CCCGCGCCCGTCGTGACGATATGAACTGTCAGTTGCTCGCAAGGACGAGT
CAAGGGACCTCCGAGTACAGTCCCATCGATCTAAAGGGTATTCGATATCC
TAGCTCGTCTCCGACAACCGTCTTTTCTCGAAGAGATTTTCGAAATGATT
CCGTTCCGAAATAATTCCGTTCCGATCGGATCGGATGGATCTAAGTTTGG
AGCAAAGGAGAAGACGTCTTGCCGGCGAAGGAGGCTCCACCCAAAATCCA
ATACTGTACCTACATTTATTGATGCTCGTTAGGCAGACAGAACACTCGAG
TGAAATCAGCCACATGTGGTGCTTTCTCCTCCTGCGAGGTCGCGACCCGA
CGAATAATAAATCGGTGTATCCGCGCTAACCATGAGCGCCGACGCCCACA
CATGCTCTCGCCAGGCGGATCGCCACCTCCCCACCATGACGGTTCACGAG
ACCTTCAAGTTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1729:13376..15490+

>mRNA_Ecto-sp13_S_contig1729.5152.1 ID=mRNA_Ecto-sp13_S_contig1729.5152.1|Name=mRNA_Ecto-sp13_S_contig1729.5152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1729:13376..15490+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACCGAGGTCATCCTGGATGATGTCAACGCGGTGTTCAAGCCGTC
TAACACTACCCTCGTGCTCGGCGCGCCCGGCTCCGGCAAGTCGTTGGGAA
CCAATCAGCAGTCGACTCTGCTCAAGGCACTGGCAGGGCTGCTCAAGCAC
GACGCCGGGCACATGAAGAAGGGCAGCGTAACGTACTGCCTTTGCCTTCA
AGTACAACGGGGCCACCAAGGAGTCTGGAATTTTTTCTCTGCCGAAGGTG
GCGGTTTCAGCTGA
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