mRNA_Ecto-sp13_S_contig1727.5139.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1727.5139.1
Unique NamemRNA_Ecto-sp13_S_contig1727.5139.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 702 bits (1813), Expect = 4.010e-246
Identity = 417/489 (85.28%), Postives = 427/489 (87.32%), Query Frame = 1 
Query:    1 MTMTDRTEEFHGAVGAFRPTVTVVNNSGEAAAIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLQKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISLLQRHADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGKAASVLPFPSGNGGTR-GGGTGGSSWPQKSVVPSPWSAEGGRNGNGSNDSTGVGKGGYDAVGSMPRATETAXXXXXXXXXXXDSNGGFRAGPHTAPPFGGANGYVP-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATGLRKRPGREDGDDAEEESRRAAWQVQVQDDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 1461
            MTMTDRT+EFHGAV AFRPTVT VNNSGEAA IRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRL+KLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDIS LQR+ADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDAL+LRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSG XXXXXXXXXXX      XXXXXXXXXXX          +GGKAASVLPFPSGNGGTR GGGTGGSSWPQKS VP+PWSAEGGRNGNG+N STGVGKGGYDAVG+MPRATE A XXXXXXX   DSNGGFRAGPHTAP FG ANGYVP +                            RATGLRKRPGREDG DAEEESRRAAWQVQVQ+DSKTRVDESHKVEKMIGDLG MFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR
Sbjct:    1 MTMTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGKAASVLPFPSGNGGTRAGGGTGGSSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYDAVGAMPRATEPAAXXXXXXXRT-DSNGGFRAGPHTAPTFGSANGYVPPAAGGGSGRAHAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A835Z5V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.480e-27
Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 1 
Query:    7 MTDRTEEFHGAVGAFRPTVTVVNNSGEAAAIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLQKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISLLQRHADG--GTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLF 552
            M DRT EF G +        V++        R Q +    + ++F +  +++A+  EGT++LI +L +LVGRKG SN+P  EI+DV +LF+GDM  +Q+++S LQ   DG  G RG+P   SQR  H  +++  L++ AQE   AF+ AL  R AV ++ N+R++ +S +R V  + Q++ PLF
Sbjct:    1 MIDRTAEFQGCI-------RVLHQHDGRPDQRPQYEAP--QPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 175
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.480e-23
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 1 
Query: 1231 MIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVF 1446
            MIG+LG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ  SGNRGII+KV I+L   +WVF
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.040e-15
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1 
Query: 1174 VQVQDDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 1461
             ++Q  SK RV+E+  +E  I +   MFS+ +TMVA Q E+V  I+DD+E A      G   L +YY I SGNRG+IIK+FI L+V I++F+ L +
Sbjct:   10 AELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 8.840e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1 
Query: 1192 SKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVF 1446
            S+ R+D +H +EK IG LG++FSRFS++VA Q EVV  ++DDVE A    E G A L K  ++  GNR + +KVF +LI  I +F
Sbjct:    6 SRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLF 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 9.020e-14
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 1 
Query: 1183 QDDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVF 1446
            Q D+ +R+ E+  VEK I +LGQ FSR + +VAAQ EVVM I+DD+EAA    ++G A +  Y +I  GNR +I KVF +L+V I VF
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVF 112
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.560e-11
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1 
Query: 1198 TRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVF 1446
            +R +    V+K IG+L QMFS+ + +V AQEE++  I+ D+++     +EGQ HL KY+Q  S NRG+IIKVF++LI  +  F
Sbjct:  216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFVVFF 298
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.030e-11
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1 
Query: 1183 QDDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVF 1446
            Q D+ +R+ E+  VEK I +LGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G   +  Y +I  GNR +I KVF +L+V I VF
Sbjct:  278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVF 365
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.870e-10
Identity = 41/118 (34.75%), Postives = 73/118 (61.86%), Query Frame = 1 
Query: 1096 ATGLRKRPGREDGDDAEEESRRAAWQVQVQDDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFL 1449
            A G+R+RP       +    ++    +     +++R++++  VE MIG++G M+SR + ++A QEE++  IEDD+  AH+  E G   L KY+   S NR +I+K+F++L+V I++FL
Sbjct:  208 AAGMRRRPFMNGATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFL 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Match: F8NEK7_SERL9 (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8NEK7_SERL9)

HSP 1 Score: 72.4 bits (176), Expect = 9.590e-10
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:    1 MTMTDRTEEFHGAVGAFRPTVTVVNNSGEAAAIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLQKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISLLQRHA-DGGTRGSPPANSQRQM--HCAFIVTTLRRSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVA 522
            M + DRT+EFH  V + R          E      QT    R  S+F ++AA++      T+  +G+L +L  RK   ++   EIS++  + + D+AG+ K I++LQ +     T GS  ++  +Q+  H   +V  L+    + + +F+D L LR    K+  +R  KF H+   A
Sbjct:    1 MGIQDRTDEFHTCVESIRHRSAFPPRGAEVKQRLLQTYEKSRAKSDFSRMAAAIGKDISSTTIKLGKLAQLAKRKTLFDDRPVEISELTFIIKQDIAGINKQIAVLQAYIKQKNTPGSQKSSEGKQLDEHTHNVVMMLQNKLADTSMSFKDVLELRTQNMKEARDRTEKFMHTTSSA 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1727.5139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE4.010e-24685.28t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z5V3_9STRA3.480e-2738.04Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZFW2_9STRA6.480e-2368.06t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2XXW7_9STRA4.040e-1544.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y6L6_AURAN8.840e-1448.24t-SNARE coiled-coil homology domain-containing pro... [more]
I2CQ48_NANGC9.020e-1450.00t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3H3X9_9STRA2.560e-1144.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CWV4_9STRA9.030e-1147.73t-SNARE coiled-coil homology domain-containing pro... [more]
A0A485LIS1_9STRA1.870e-1034.75Aste57867_21905 protein n=1 Tax=Aphanomyces stella... [more]
F8NEK7_SERL99.590e-1028.81t-SNARE coiled-coil homology domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1727contigEcto-sp13_S_contig1727:8797..14509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score703.4
Seed ortholog evalue7.6e-200
Seed eggNOG ortholog2880.D8LR19
Preferred nameSTX5
Model size2407
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Exons7
EggNOG free text desc.vesicle docking
EggNOG OGsKOG0812@1,KOG0812@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-06_004720.1
Cds size1464
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1727.5139.1prot_Ecto-sp13_S_contig1727.5139.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1727 9740..14509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.321265-UTR-Ecto-sp13_S_contig1727:8796..97391681462902.321265-UTR-Ecto-sp13_S_contig1727:8796..9739Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1727 8797..9739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.3337886-CDS-Ecto-sp13_S_contig1727:9739..98361681462902.3337886-CDS-Ecto-sp13_S_contig1727:9739..9836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 9740..9836 -
1681462902.344521-CDS-Ecto-sp13_S_contig1727:10165..103111681462902.344521-CDS-Ecto-sp13_S_contig1727:10165..10311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 10166..10311 -
1681462902.3526292-CDS-Ecto-sp13_S_contig1727:10786..108871681462902.3526292-CDS-Ecto-sp13_S_contig1727:10786..10887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 10787..10887 -
1681462902.360693-CDS-Ecto-sp13_S_contig1727:11464..121191681462902.360693-CDS-Ecto-sp13_S_contig1727:11464..12119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 11465..12119 -
1681462902.3743727-CDS-Ecto-sp13_S_contig1727:12557..126991681462902.3743727-CDS-Ecto-sp13_S_contig1727:12557..12699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 12558..12699 -
1681462902.387708-CDS-Ecto-sp13_S_contig1727:13186..133171681462902.387708-CDS-Ecto-sp13_S_contig1727:13186..13317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 13187..13317 -
1681462902.3973553-CDS-Ecto-sp13_S_contig1727:14317..145091681462902.3973553-CDS-Ecto-sp13_S_contig1727:14317..14509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 14318..14509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1727.5139.1

>prot_Ecto-sp13_S_contig1727.5139.1 ID=prot_Ecto-sp13_S_contig1727.5139.1|Name=mRNA_Ecto-sp13_S_contig1727.5139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MTMTDRTEEFHGAVGAFRPTVTVVNNSGEAAAIRAQTDLGYRKTSEFLQL
AASVAVGFEGTSRLIGRLQKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQ
KDISLLQRHADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDAL
LLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGAGAGGGARRRRP
TANPPSPPPPLPDEDDEDNKGHKHGPGRGGKAASVLPFPSGNGGTRGGGT
GGSSWPQKSVVPSPWSAEGGRNGNGSNDSTGVGKGGYDAVGSMPRATETA
AAAAAAAAARTDSNGGFRAGPHTAPPFGGANGYVPSAAGGGSGRHAAAPP
EFPPPPTGASRGGGRATGLRKRPGREDGDDAEEESRRAAWQVQVQDDSKT
RVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEG
QAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1727:8797..14509-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1727.5139.1 ID=mRNA_Ecto-sp13_S_contig1727.5139.1|Name=mRNA_Ecto-sp13_S_contig1727.5139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1727:8797..14509- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCATGACGGACCGAACCGAGGAGTTCCACGGCGCGGTCGGTGCCTT
CCGTCCTACAGTCACGGTGGTCAACAACAGCGGAGAGGCAGCGGCAATCA
GGGCGCAGACCGATCTCGGGTACAGAAAGACGTCGGAGTTTCTCCAGCTC
GCTGCGAGCGTTGCAGTCGGCTTCGAGGGCACGTCGAGGCTGGTGGGTGT
CTTCTTGCCGGCCAGAAGCTACAGGGCGTGGGTGGTAGGGACGTCTTGCT
AGCTGGTAGAGGAGCGCGAGTGTCACGTTTGCTAAGGGACCACGTCGTAT
GTGCTGTAGGTGGGACACTGAGTTGCACATACCGCAACACGCCCTCGGTT
GTTTGCCGAGACCTTGTGGGGGGAAGTCGACGAAGAAGATGCCAAGGCAA
CAACAATTGCAGGTCCGGTATGCAACCCTTCTCTGCACGGAAACATTTGG
CATGCTTGCTGAACACTTTGCTGGAATTTCGGCGGCCTTATTGTTGTACT
TGGGAATGTGCAGCAGAGATGTTTTGAAACCCCTCAAGTGTCGTGTCCAG
CAGACAAATCGACTAGTCATGAAGGCACACAACTTCATATGTACACTACC
CTGTATTCGGCAGTAAAATTTTTATGATGCTCGCACGAGAACACACCGGA
CAACACTGACTGGCGACCAAAGTACGCGGCCTCTGCAGCAGTCGTCCGTT
GTATCATACAGGCCGGTGTAACACCAACGAGAGGGCTGACAAGCGGTAGC
GTCTGGTCGCCAAATGTGTACGATAGTGATGACAACAGTGCCAGCTGTTT
TCTATGTGCATATAATGTACCCCCCTCGGGCACGAAGTATGAGTTGCTCG
GGTCGGTTGTAACGGCCACGTATTCCGACCCAGTATTGATGCGCGGCTGT
ATTCCACCACATAGCGTAACGCACGTACCACTCGCTTCGGAAGCACGTTC
GTTCTCTCGAGAAAATTTGAGAGACGAGTTGCTTTCATACGGGCCTGCCT
CCCTACTCCCGTTTTTTTTTTTTTTTTTTTTTATAAGATCTGGCGGTTTA
AGAAACTAGTTGGGAGCAAGTGTTTTATTAACAACCCGGCGGCCGAAAAA
AGAGACGNNNNNNNNNNAAGGTATAAGAGTCCAGTCGCTTTATGGCGGGC
CTGCCTCCCTCCTCCCGTTTTTTTTTTTTTTTTTTGCATCAGATCGGGCG
GTTGCAGAAGCTCGTTGGACGCAAGGGTTTCAGCAACAACCCGGCGGCCG
AGATAAGCGACGTCATGAAGCTCTTCGAGGGGGACATGGCCGGCCTACAG
AAAGACATATCGTTGCTGCAGAGGTGGGTCTGGCGTGCGCATCACGCACG
CACACAGGGAGAGGAAAATATTAACGTTTCCCTCCAATACACCTACTCTT
CGATGAAAGCCACCCGGGAATAGACCGTGATAGTATCGCCCGGCCCTGCA
CGGTCATCATGTGCACGATGGGTCCTCTACGACACCACGGCTGTGGCCCT
CGCGCCGTTGCCCTTTCACTTCGCTTCGCGTTTGGTTGTGGTGAGATCGT
CAGGTTGCGTTTCTTTTATCCTCCGACCCCGTGCGTAATGAAATACTTGG
CCCTCAATGTCTTGCATTGTGCGGCAGGAGCTGTTTGACCAAATAAAGCG
GGGCGCACACTTTCCAAAACAGACGACGGAGACTCTACCGTCCGTCGCGG
AGAAAGAGAAAAGCCACATTTTATTTTCCGCGCGGCGTATCCCCACCCCG
CGCCAACCTCTCCCTCCCTCCCCTCAAACTGCCATCGCCTGTCTGCACTA
AATTTATCAGGCACGCAGATGGCGGCACCAGGGGGAGCCCGCCGGCCAAC
AGCCAGCGGCAGATGCACTGCGCGTTTATCGTGACGACGCTGCGGAGAAG
CGCGCAGGAGCACACGAAAGCCTTTCGTGACGCTCTCCTGCTGCGAGCAG
CGGTGAGCGTGCAGAGGAGAGAAGGTTGCGACGCGTGTTGCCGCTTTCTG
TGACACGTTTAGGGGTGCGTGTAGGTTGTCTTCCCTCGGGGGGTGAGGAG
GAGAGCGGGGTCGGAGGGAAGCGAGTGCGTTGTACCCGGAGAGGCAAGTG
GTATTTCTTGCGATTGCAAAGGCTCTCCCGGCTTGTATTGGTAGGCGCGT
CCTCATTGTTGGCGTTACGTGTCGTGGCAATCCGTTGCATTGATATTGGG
TCTGTCGAACAGAATTTGTGAAGTCGCTGTTGGATCCCGTCGTGATGTGC
GTGCGGCAGTTACCGATCTCAGTACAAGTCCCATTCAGTGGTGATTCTCG
CACATTTATTATAGTCTACACACGATGGGTGAGACGCAACCAACCCCGTG
CGCATTCACGACGATGTGTTTTGCTTGAAACGAAACCCAGGTGGAGAAGC
AGCAGAACGAACGCCAGCGAAAGTTCTCGCACTCCCGCGGCGTCGCCCCC
GCGACCCAGCTGGACTACCCTCTCTTCGGCAGTAGCGGCGCCGGCGCCGG
GGGAGGGGCACGACGCCGCCGCCCGACGGCCAATCCGCCGTCCCCCCCGC
CGCCTCTCCCCGACGAAGACGACGAGGACAACAAGGGGCACAAACACGGA
CCCGGAAGAGGCGGAAAGGCTGCGTCGGTGTTGCCGTTCCCTTCCGGTAA
TGGAGGCACAAGGGGGGGGGGTACAGGCGGCTCTTCCTGGCCTCAGAAAT
CGGTGGTCCCTTCGCCGTGGTCGGCAGAGGGGGGAAGAAACGGCAACGGC
AGTAATGATTCGACGGGCGTTGGCAAAGGAGGGTACGACGCCGTCGGATC
AATGCCACGAGCAACGGAAACAGCAGCAGCAGCAGCAGCTGCTGCCGCTG
CGAGAACAGACAGCAATGGAGGGTTCCGGGCGGGGCCTCATACGGCGCCG
CCCTTTGGCGGTGCCAACGGTTACGTACCATCGGCTGCGGGGGGTGGCAG
CGGGAGGCATGCGGCGGCTCCGCCAGAGTTTCCGCCTCCTCCGACTGGGG
CGTCGAGAGGCGGTGGGCGCGCCACTGGGCTGCGGAAACGACCAGGTGGG
GTGCTCTGATAGAACACCAGCAGGACACGGAAAGTGCTGCGCGTGGAGAG
CGGGAGAGGGGGTGGTGTTTGCGTTGACGGATTGTTCGTCAGGGTGCTTC
TCTGCGGTATAGCGTTTTCACCTTTCTGCTCCTTTTTGTCTACTCCAGTA
GGAAACAGCACCAGCACTGCGCTGGCTCGTGTGTTATTTTGGCGATTCAT
TTGGTGTTTTTTGGGACCGTGCCGGTACACTATTTCGTGGTGGCTTCTGC
TCTTGTCCCTCCAACTTTCTCGTCTTGATTTTTCCTTGCGTCTAAACGCA
TTATGCAGTGGTTGGTTGCCTGCTCTCTGTAGCCTACATTTGCAGTCGTA
CTCTCCTGCTTCGTTTCGTGCACCCCTCCTTCGCGATTCCCTTCTGGCGC
ATTGTTTTGGTGCTTGTGTTCACAACGAACGAGCCACTGAGTTGTTGCGT
TCGTTCGCTGAAGAAGAGTGTACGAGATTCGTACGACAAGCGGCAGAGAG
GTTCGTAAACCAAGCCCACAATCATCCCCTCCCCACGCCACACACCACGT
TACGTCATGCCGCCCCCCCCAGGGCGAGAGGATGGGGATGACGCCGAGGA
GGAGTCCCGCCGAGCGGCGTGGCAAGTTCAGGTCCAAGACGACTCCAAGA
CCAGAGTGGATGAATCACACAAGGTAAAAGACACATCCAAACCCCCCAAT
AAGAACTGGTCACCTTACATGGTACGAAGGTACGCTAGCCTTTGTTGTGG
CCGATACTGCTGTTATTGCCCAGACTACCCCGACTCCCGCCACCACAGCC
GCCGCCACACGACCCGCCCTGCTATGTGGGCGTTACTTCGGCGTGACGAG
AAGACTGCCAGGGGGCGGGTATCCCCCCGGACTCGTGAATGTTGAGTGTT
GGGATTAGCGCGAACTCCATAAACGGCACCACCAGACAGCGACGTTTACT
GCGAAAGAGGCGCAAAATTGTGAAGAAAGAAGAGATGAGCCGGTACCAAA
GTAGACAGGGGAATTGAGGCCAGAAAGTATGCTGTCAGTCGATTCGATAT
TTTTTCGTCCTACATGTCCTTAACCAGCGCACTCGAACCTGACGAAAAAC
AATTACACTTCAACGCAACGAAATGTTGGAAAAAAACAAAAATCACAGGT
GGAGAAGATGATCGGCGATTTGGGGCAGATGTTCAGCCGTTTCTCGACCA
TGGTGGCGGCGCAGGAGGAGGTGGTTATGCACATCGAGGACGACGTCGAG
GCCGCTCACGCCTTCGCCGAAGAGGGACAGGCGCACCTCGCCAAGTGAGT
ATCCTGGAGAATGGGATATACCATGTCGTCCAACAACGAAAATGCGTCAG
CAGGAGATTATTCACTCCGAGTTTTTGCTTACGGTGGCGCGTCACAGAGA
GATGTCGGAATGTTGCTGCTTCGCAAGACCATGTTATTGTTACTGCTCCG
CAAGACTTACGATTTGTGGTACCACCTTGCGGAAGGGGAAGAGAGAGGCG
CAAACCGCAAGGTGCTTGTGTTTTTTTGGCGTTGTTCGGTATGCATCGCT
ACTCTTATTTTTTCTCAACGCAGCTCGCTTCTTCGATTTGTTCGCGCCTT
CTGGCTGCTGCTGCTTCCCCCAGGTACTACCAGATTACGAGCGGCAACCG
GGGCATCATCATCAAGGTGTTCATCATGTTGATTGTTTGCATCTGGGTCT
TCCTGGGTCTTATGAGATGACAACTCCCTTCTTGTCCGCTCCATCAATTT
TGCGTCGCCCCCCGGCCAAGAAATGCGCAGAGCGCCGACATACATCCACT
AATCCTACGCATTGCAGCACCAGCCCCGTTGCCATCGAAGGACTTTCGTC
TTGGTCACGGCGCATGTGGGCAAAGCATTATACGTTCGTGGTCTGGTAGA
TGCCCTTTGCCGGCATTAGTGCGGGTTGCGATGTTGATCTCGTGTCTTCG
GGGTTGCGTGTTTGTAGCCGAGCGATATTTTCGCAAGTTCGACGAGGGAG
GGAGGTCGCGCATTGGGAGGGGGATGCCATCACGTGATTCGGAGTTTCTC
CAGCCCCATTTGTGCCCAGGAGCCCCTGTAGCGTTGCTATTTGGGTTTGT
GTTCCTCGCGTGGCACCTTTTGGCCGTATTGCGCCAGCCGGCCTGTAGAG
GCGTTGACTGGCCAGATAATGCAGGCAAGAACGCGTGCTTAGACAGCTTT
GCATCGGCTGTTATACCTATCATGTTGACATGAAGGTGTTTCCGCCTTTC
AAAGGAAGCGGCATGGTGACCCTCGTCTACACGTGTGTGTTTTGCGCCCA
CTCGGCGACTAATTCTATCGATCTGTGTGAATCACGCTCGTTGTCGTTGT
TGCCCTCCGCACGTTTGTCTAGTGGTCATGTTTTCGTTTTCGTCGGTGTG
CTGGTGTGGGGAGTTCCCGACCGACCGATGGGGCGGTGCTTGTAGCAAGT
GTGCATGTCGCGCCAACACTGCCGTTAAGCCACATTCTTCGCATGTTTGA
TGACTGCTGCATAGATCGCTAAGCGCGGTGCCAATTGGTCGAGTCCCGTG
CGTTACGCTCGTTCCCCGGTGGCTCGCGCGTCACCCACGGGTGGAGAGGA
TGAGGTGTGCACAGGTATCCCCAAGTAGTTATCCACAGGCGGCTCGGAGT
CGACATATCTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1727:8797..14509-

>mRNA_Ecto-sp13_S_contig1727.5139.1 ID=mRNA_Ecto-sp13_S_contig1727.5139.1|Name=mRNA_Ecto-sp13_S_contig1727.5139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1727:8797..14509- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCATGACGGACCGAACCGAGGAGTTCCACGGCGCGGTCGGTGCCTT
CCGTCCTACAGTCACGGTGGTCAACAACAGCGGAGAGGCAGCGGCAATCA
GGGCGCAGACCGATCTCGGGTACAGAAAGACGTCGGAGTTTCTCCAGCTC
GCTGCGAGCGTTGCAGTCGGCTTCGAGGGCACGTCGAGGCTGATCGGGCG
GTTGCAGAAGCTCGTTGGACGCAAGGGTTTCAGCAACAACCCGGCGGCCG
AGATAAGCGACGTCATGAAGCTCTTCGAGGGGGACATGGCCGGCCTACAG
AAAGACATATCGTTGCTGCAGAGGCACGCAGATGGCGGCACCAGGGGGAG
CCCGCCGGCCAACAGCCAGCGGCAGATGCACTGCGCGTTTATCGTGACGA
CGCTGCGGAGAAGCGCGCAGGAGCACACGAAAGCCTTTCGTGACGCTCTC
CTGCTGCGAGCAGCGGTGGAGAAGCAGCAGAACGAACGCCAGCGAAAGTT
CTCGCACTCCCGCGGCGTCGCCCCCGCGACCCAGCTGGACTACCCTCTCT
TCGGCAGTAGCGGCGCCGGCGCCGGGGGAGGGGCACGACGCCGCCGCCCG
ACGGCCAATCCGCCGTCCCCCCCGCCGCCTCTCCCCGACGAAGACGACGA
GGACAACAAGGGGCACAAACACGGACCCGGAAGAGGCGGAAAGGCTGCGT
CGGTGTTGCCGTTCCCTTCCGGTAATGGAGGCACAAGGGGGGGGGGTACA
GGCGGCTCTTCCTGGCCTCAGAAATCGGTGGTCCCTTCGCCGTGGTCGGC
AGAGGGGGGAAGAAACGGCAACGGCAGTAATGATTCGACGGGCGTTGGCA
AAGGAGGGTACGACGCCGTCGGATCAATGCCACGAGCAACGGAAACAGCA
GCAGCAGCAGCAGCTGCTGCCGCTGCGAGAACAGACAGCAATGGAGGGTT
CCGGGCGGGGCCTCATACGGCGCCGCCCTTTGGCGGTGCCAACGGTTACG
TACCATCGGCTGCGGGGGGTGGCAGCGGGAGGCATGCGGCGGCTCCGCCA
GAGTTTCCGCCTCCTCCGACTGGGGCGTCGAGAGGCGGTGGGCGCGCCAC
TGGGCTGCGGAAACGACCAGGGCGAGAGGATGGGGATGACGCCGAGGAGG
AGTCCCGCCGAGCGGCGTGGCAAGTTCAGGTCCAAGACGACTCCAAGACC
AGAGTGGATGAATCACACAAGGTGGAGAAGATGATCGGCGATTTGGGGCA
GATGTTCAGCCGTTTCTCGACCATGGTGGCGGCGCAGGAGGAGGTGGTTA
TGCACATCGAGGACGACGTCGAGGCCGCTCACGCCTTCGCCGAAGAGGGA
CAGGCGCACCTCGCCAAGTACTACCAGATTACGAGCGGCAACCGGGGCAT
CATCATCAAGGTGTTCATCATGTTGATTGTTTGCATCTGGGTCTTCCTGG
GTCTTATGAGATGA
back to top