mRNA_Ecto-sp13_S_contig17161.5079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17161.5079.1
Unique NamemRNA_Ecto-sp13_S_contig17161.5079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17161.5079.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 1.490e-147
Identity = 235/267 (88.01%), Postives = 240/267 (89.89%), Query Frame = 1 
Query:  190 GDIEIPQLRQGENAELRSHPSPRGSASENISFGDRFASMEDGGVNFEDEFDPILASIRKPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGERGRDANDAGRPSTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQLDQTCRGVDGGDHELEEGRGGEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYIPVFAGIGLLGLLYLWRWTTLLVGKDTANEVKVLGSERM 990
            GDIEIPQLRQ +NAELRSHPSPRGS SE+ SFGDRFASMEDGGVNFEDEFDPILASIRKPQ                  XXXXXXXXX SG ERGR+ANDAGRP+TGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQ D TCRGVDGGDHELEEGRG EDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKY+PVF GIGLLGLLYLWRWTTLLVGKDTANEVKVLGSERM
Sbjct:   90 GDIEIPQLRQEDNAELRSHPSPRGSTSEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXXXPSGRERGREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQSDHTCRGVDGGDHELEEGRGDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYVPVFVGIGLLGLLYLWRWTTLLVGKDTANEVKVLGSERM 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17161.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G702_ECTSI1.490e-14788.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17161contigEcto-sp13_S_contig17161:671..2611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size993
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011590.1
Cds size993
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.7992067-CDS-Ecto-sp13_S_contig17161:670..14681681462897.7992067-CDS-Ecto-sp13_S_contig17161:670..1468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17161 671..1468 +
1681462897.8097227-CDS-Ecto-sp13_S_contig17161:2194..22851681462897.8097227-CDS-Ecto-sp13_S_contig17161:2194..2285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17161 2195..2285 +
1681462897.8200521-CDS-Ecto-sp13_S_contig17161:2507..26111681462897.8200521-CDS-Ecto-sp13_S_contig17161:2507..2611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17161 2508..2611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17161.5079.1prot_Ecto-sp13_S_contig17161.5079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17161 671..2611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17161.5079.1

>prot_Ecto-sp13_S_contig17161.5079.1 ID=prot_Ecto-sp13_S_contig17161.5079.1|Name=mRNA_Ecto-sp13_S_contig17161.5079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp
LSRLLEEQEREERSKEESLRLLRSSEETTDASSSQDSPGTSTTAPTAGRS
EREANSLGSVDTLGDIEIPQLRQGENAELRSHPSPRGSASENISFGDRFA
SMEDGGVNFEDEFDPILASIRKPQPPPASTTAAASSMSPRGRLAAATAAA
PPSGGERGRDANDAGRPSTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARI
SESANAFRSALGPGGAAQSATDKSKRRQLDQTCRGVDGGDHELEEGRGGE
DDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYIPVFAGIGL
LGLLYLWRWTTLLVGKDTANEVKVLGSERM*
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mRNA from alignment at Ecto-sp13_S_contig17161:671..2611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17161.5079.1 ID=mRNA_Ecto-sp13_S_contig17161.5079.1|Name=mRNA_Ecto-sp13_S_contig17161.5079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17161:671..2611+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCCAGATTGCTGGAGGAGCAGGAGAGGGAGGAGAGGTCCAAAGAAGA
ATCGCTCCGGCTTCTGAGAAGCTCGGAAGAGACGACCGACGCGTCTTCCT
CCCAGGACTCTCCGGGCACGAGCACCACGGCGCCAACAGCGGGGAGGTCC
GAGAGGGAAGCCAACAGCCTTGGTAGCGTGGACACGCTCGGTGACATTGA
GATCCCGCAGCTCCGCCAAGGAGAAAATGCGGAACTTCGCAGTCACCCGT
CGCCGAGGGGTAGCGCGAGCGAGAACATCAGTTTCGGCGATAGGTTTGCG
TCAATGGAGGATGGCGGGGTAAACTTCGAGGACGAGTTCGATCCCATCTT
GGCGTCGATACGGAAACCGCAGCCGCCGCCGGCGAGCACGACAGCTGCGG
CAAGTAGCATGTCGCCGAGAGGTCGTCTTGCGGCAGCGACAGCAGCGGCG
CCCCCGTCCGGCGGAGAGAGAGGGCGAGATGCAAACGACGCGGGAAGGCC
CTCTACAGGATCCTCCCTCGCAGCAGGCTTCTTGTCCATGCTCCCGGGGG
ACATGCGGGCGAAAGCCGGGGAAGTGATGGCGCAGTCTAGCGCACGTATC
TCCGAGTCTGCGAACGCGTTTCGGTCTGCTTTAGGCCCCGGCGGCGCGGC
GCAATCAGCGACCGATAAGTCGAAGAGGAGACAGTTAGACCAGACCTGCC
GCGGCGTGGATGGCGGTGATCACGAGCTTGAGGAGGGAAGAGGAGGCGAG
GACGATGTGCGGCTGATGAACGTGAACGAGGTGCTCAGCGAGGAGGAGGT
GAGGGCAGTGGCAAGGGTCGGGATGTAGCGGTCTGTCTCTCTGCTGCAAG
TGCTTGGTTTTGAAGGTAGAACCATGAGCTACAATGGATTGCGCTGTGTG
ACTGGCTTCCAGAACCATACTGTGATTTAAACCGTATGAAGTTATTGAAA
GTGAGAATACTTGCAAGTCCATCGTGCGGCATCGTACGGGTACACTCTAT
CGGCATGGTACGGCTCGAACCAACGTTGACCAGAAACAGAGTTGCCCAAA
GCCCCCCACAGTTTAACGGTGTGGGGTTTCATGCGTGTACCGTAGCGCGC
CGAAGTCACACTTTGGGCAGGATTCGCCATGCGGCTGCACCTGGACCCGC
AAAAGAATAATCAAAGGTCTCCGCGGGGAAGACAGACGATTGCCCCACGT
TCATATACTCCAATTGTCTGCAGACGAAAACGTCTGCAGGTGATGACTCT
GTACATGGCCGGAAACGCGTGCGAGCGAGCGGTGAGCCTGTCGATGGTTG
GATCGGGCCTGAACACCTGCGATTTTGGTTGCCCGTCGCACGTGGCCCAC
CACTTTGTTGAGCGCTCACTCGTTTCGGCTGACTGCTGCCGGTGGAATGA
AAATCGTGCCAGGATGGCTTGCTATCTCTTTTATTGTGCCATGACTATCG
TGGAGCATGTCGTCTCGTGCTGCGCTCAACCCTATGCTTCCGTGTATTGC
TCTTCCACGCTCCGCCAATCCCAGAGACAACAACTCGCATCATTTGCGGG
CGGCGCTGGGGCAGGGAGGTTTTGTGGATGGAGGAGGCTCCGAAAGTACA
TTCCTGTGTTTGCAGGTGAGAAGAAGGTGCCTTTTTGTATATCTGATGGT
GCTGTATCCCCCTCCGAGCCAATCACAACGTTTCGCCCGTCGATCGTTGA
CGTCTGAAATGTTTTTTCTGGCAGATGCATTCGCTTTGCTTTTATTTTCC
TCTCTGGATCAAGCTCGGCGCGCTTTCCATACACCAGCAGTCATTTTCAC
TCCTTCGGTCCTCCCCTCGTTGTGTGCCGCACCACAGGCATCGGGCTACT
CGGCTTGTTGTACCTCTGGCGATGGACCACATTGCTTGTAGGCAAGGATA
CCGCGAACGAAGTCAAGGTGTTGGGCTCGGAAAGGATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17161:671..2611+

>mRNA_Ecto-sp13_S_contig17161.5079.1 ID=mRNA_Ecto-sp13_S_contig17161.5079.1|Name=mRNA_Ecto-sp13_S_contig17161.5079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17161:671..2611+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCCAGATTGCTGGAGGAGCAGGAGAGGGAGGAGAGGTCCAAAGAAGA
ATCGCTCCGGCTTCTGAGAAGCTCGGAAGAGACGACCGACGCGTCTTCCT
CCCAGGACTCTCCGGGCACGAGCACCACGGCGCCAACAGCGGGGAGGTCC
GAGAGGGAAGCCAACAGCCTTGGTAGCGTGGACACGCTCGGTGACATTGA
GATCCCGCAGCTCCGCCAAGGAGAAAATGCGGAACTTCGCAGTCACCCGT
CGCCGAGGGGTAGCGCGAGCGAGAACATCAGTTTCGGCGATAGGTTTGCG
TCAATGGAGGATGGCGGGGTAAACTTCGAGGACGAGTTCGATCCCATCTT
GGCGTCGATACGGAAACCGCAGCCGCCGCCGGCGAGCACGACAGCTGCGG
CAAGTAGCATGTCGCCGAGAGGTCGTCTTGCGGCAGCGACAGCAGCGGCG
CCCCCGTCCGGCGGAGAGAGAGGGCGAGATGCAAACGACGCGGGAAGGCC
CTCTACAGGATCCTCCCTCGCAGCAGGCTTCTTGTCCATGCTCCCGGGGG
ACATGCGGGCGAAAGCCGGGGAAGTGATGGCGCAGTCTAGCGCACGTATC
TCCGAGTCTGCGAACGCGTTTCGGTCTGCTTTAGGCCCCGGCGGCGCGGC
GCAATCAGCGACCGATAAGTCGAAGAGGAGACAGTTAGACCAGACCTGCC
GCGGCGTGGATGGCGGTGATCACGAGCTTGAGGAGGGAAGAGGAGGCGAG
GACGATGTGCGGCTGATGAACGTGAACGAGGTGCTCAGCGAGGAGGAGAG
ACAACAACTCGCATCATTTGCGGGCGGCGCTGGGGCAGGGAGGTTTTGTG
GATGGAGGAGGCTCCGAAAGTACATTCCTGTGTTTGCAGGCATCGGGCTA
CTCGGCTTGTTGTACCTCTGGCGATGGACCACATTGCTTGTAGGCAAGGA
TACCGCGAACGAAGTCAAGGTGTTGGGCTCGGAAAGGATGTGA
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