mRNA_Ecto-sp13_S_contig1715.5073.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1715.5073.1
Unique NamemRNA_Ecto-sp13_S_contig1715.5073.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.450e-44
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  142 YDDPCLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCVKKAVDASGDDDVPASASTTGAAMKGKGASSSK 387
            YDDPCLVCGGLDNP+KALLCDGCDGCYH+YCL+PPLKRAPKGDWLCPKCV+K +DASGDDDVPASASTTG A KGKG+S+SK
Sbjct: 1151 YDDPCLVCGGLDNPDKALLCDGCDGCYHVYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASK 1232
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A7S1JGF3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JGF3_9EUGL)

HSP 1 Score: 84.7 bits (208), Expect = 3.190e-18
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  145 DDPCLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCVKK 297
            ++PC++CGG +  E+++LCDGCDG YH++CL PPLK  P GDW CP+C  K
Sbjct:   30 NEPCVICGGKEEAERSVLCDGCDGAYHIFCLRPPLKTIPDGDWFCPQCQAK 80
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A7S1CM23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM23_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.260e-15
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  145 DDPCLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCVK 294
            D  C VCGGL  P K LLCD CDG YH++CL PPLK  P GDW CP C +
Sbjct:  416 DPGCRVCGGLHKPSKVLLCDHCDGEYHLFCLKPPLKAVPAGDWACPDCTE 465
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A673HEG1_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HEG1_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CPKC+
Sbjct:  244 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCL 289
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A673HDD9_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=6 Tax=Cyprininae TaxID=2743694 RepID=A0A673HDD9_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CPKC+
Sbjct:  239 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCL 284
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A673HE83_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE83_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CPKC+
Sbjct:  296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCL 341
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A673HE89_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE89_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CPKC+
Sbjct:  296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCL 341
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A673HE77_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE77_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CPKC+
Sbjct:  282 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCL 327
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 2.830e-14
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  142 YDDP-CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCVKKAVDAS 312
            YDD  C VCGG D+P+  LLCD CDG YHM CL PPLK  P GDW CP C   A DAS
Sbjct: 1618 YDDTLCAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCT--AADAS 1673
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BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Match: A0A8J4U663_CLAMG ([Histone H3]-trimethyl-L-lysine(4) demethylase (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U663_CLAMG)

HSP 1 Score: 77.8 bits (190), Expect = 5.260e-14
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  154 CLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCV 291
            CL CGG D+ +K LLCDGCD  YH YCL PPL   PKGDW CP+C+
Sbjct:  919 CLGCGGGDDEDKLLLCDGCDDSYHTYCLIPPLHDVPKGDWRCPECL 964
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1715.5073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWU5_9PHAE6.450e-4487.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1JGF3_9EUGL3.190e-1856.86Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1CM23_9STRA7.260e-1562.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A673HEG1_9TELE1.480e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A673HDD9_9TELE1.480e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase n=6... [more]
A0A673HE83_9TELE1.480e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A673HE89_9TELE1.480e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A673HE77_9TELE1.480e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A835SC30_9CHLO2.830e-1463.79PHD-type domain-containing protein n=1 Tax=Chlamyd... [more]
A0A8J4U663_CLAMG5.260e-1465.22[Histone H3]-trimethyl-L-lysine(4) demethylase (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1715contigEcto-sp13_S_contig1715:12461..13235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score82.0
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog38833.XP_003061284.1
Model size410
KEGG koko:K11446
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000976,GO:0001046,GO:0001047,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0007623,GO:0008150,GO:0008152,GO:0008214,GO:0008270,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0016043,GO:0016569,GO:0016570,GO:0016577,GO:0019219,GO:0019222,GO:0019538,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031490,GO:0032268,GO:0032269,GO:0032451,GO:0032452,GO:0032453,GO:0032501,GO:0032922,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034647,GO:0034648,GO:0034720,GO:0034721,GO:0035064,GO:0036211,GO:0042393,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043565,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046872,GO:0046914,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051090,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051336,GO:0051346,GO:0060255,GO:0065007,GO:0065009,GO:0070076,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0097159,GO:0140030,GO:0140034,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901725,GO:1901726,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990837,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Exons2
EggNOG free text desc.lysine-specific demethylase
EggNOG OGs37KV3@33090,COG0055@1,KOG1246@2759
Cds size408
COG Functional cat.C
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.279864-CDS-Ecto-sp13_S_contig1715:12460..125981681462897.279864-CDS-Ecto-sp13_S_contig1715:12460..12598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 12461..12598 -
1681462897.2905324-CDS-Ecto-sp13_S_contig1715:12965..132351681462897.2905324-CDS-Ecto-sp13_S_contig1715:12965..13235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 12966..13235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1715.5073.1prot_Ecto-sp13_S_contig1715.5073.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1715 12461..13235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1715.5073.1

>prot_Ecto-sp13_S_contig1715.5073.1 ID=prot_Ecto-sp13_S_contig1715.5073.1|Name=mRNA_Ecto-sp13_S_contig1715.5073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
GGVKEEIGKGKRQKKASEDDDEKPAKKIKEESGAGGSAEDGSSSEEEYDD
PCLVCGGLDNPEKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCVKKA
VDASGDDDVPASASTTGAAMKGKGASSSKATAKGAP
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mRNA from alignment at Ecto-sp13_S_contig1715:12461..13235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1715.5073.1 ID=mRNA_Ecto-sp13_S_contig1715.5073.1|Name=mRNA_Ecto-sp13_S_contig1715.5073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:12461..13235- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGCGTCAAGGAGGAGATTGGGAAAGGAAAGAGGCAAAAGAAGGCAAG
CGAAGACGACGACGAGAAGCCCGCCAAGAAAATCAAAGAAGAGAGCGGTG
CAGGGGGCTCCGCAGAGGATGGTTCGTCGAGCGAGGAAGAGTACGACGAT
CCGTGTCTGGTGTGCGGCGGCCTGGACAACCCCGAGAAGGCCTTGCTCTG
TGACGGGTGCGACGGGTGCTACCACATGTACTGCCTCACCCCACCGCTGA
AGCGCGCGCCCAAGGGAGACGTGAGTCGTCCTTGTTGTCGGAGTAGAGAT
TGGGGGAGGGGGGGAGTACTCATGCCGTCGTCGGACCATTGACCTCGCAT
CCCTGAACAGCTGGGACGGAGCACGCGGGGTTCTTGGGTGTGGTCTGTTG
TGCGCATGCACTGTGGTACAATTCTTATGTGCTTGCTGCTTCTGTTTGTA
GCTTTTCTCCGGTGGCAAGTGGATCTTAGACCTTTTCATACGCTCCCTTC
TGAAGTGGATGCTGGAGGATCTTCGGTGCTCCTTCGAAACTGCACTAAAT
AAAACCCTCCCCCCCCCCCCCCCTCGCCGCGTGCGCACGCTTCCGCCGAA
ATAACGTACTCACACTGACATGAATTGGACCCAAAAGTGGCTGTGTCCCA
AGTGCGTGAAAAAGGCCGTCGACGCCAGCGGTGACGACGACGTGCCCGCC
AGCGCTAGCACGACAGGCGCAGCAATGAAGGGCAAAGGCGCCTCTTCCTC
GAAGGCGACCGCCAAAGGTGCTCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1715:12461..13235-

>mRNA_Ecto-sp13_S_contig1715.5073.1 ID=mRNA_Ecto-sp13_S_contig1715.5073.1|Name=mRNA_Ecto-sp13_S_contig1715.5073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:12461..13235- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGCGTCAAGGAGGAGATTGGGAAAGGAAAGAGGCAAAAGAAGGCAAG
CGAAGACGACGACGAGAAGCCCGCCAAGAAAATCAAAGAAGAGAGCGGTG
CAGGGGGCTCCGCAGAGGATGGTTCGTCGAGCGAGGAAGAGTACGACGAT
CCGTGTCTGGTGTGCGGCGGCCTGGACAACCCCGAGAAGGCCTTGCTCTG
TGACGGGTGCGACGGGTGCTACCACATGTACTGCCTCACCCCACCGCTGA
AGCGCGCGCCCAAGGGAGACTGGCTGTGTCCCAAGTGCGTGAAAAAGGCC
GTCGACGCCAGCGGTGACGACGACGTGCCCGCCAGCGCTAGCACGACAGG
CGCAGCAATGAAGGGCAAAGGCGCCTCTTCCTCGAAGGCGACCGCCAAAG
GTGCTCCT
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