mRNA_Ecto-sp13_S_contig17139.5065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17139.5065.1
Unique NamemRNA_Ecto-sp13_S_contig17139.5065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI)

HSP 1 Score: 661 bits (1706), Expect = 1.590e-216
Identity = 354/413 (85.71%), Postives = 362/413 (87.65%), Query Frame = 1
Query:   28 SRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAWNSSAGTEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDLKGVRDRGRSAAVSGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSAAFPEEKDGAADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVDRARGVLQLPRKAGRDDDDDRMTEDKDEPSPGHKLPRPTSKTSSRRGASERLLSRFAA 1266
            SRLRGQLQFP HMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVD+EAFVLGKTGPTCKGSE++ASR                        TPTPVLSQEN DVFI AVVKLLPASLALA+PQ P A PP TSVQGGAT   +TGSGVVY E GSR   PIPGV  SPYEELECLGMVLECLVEACIESLYNGAWNSSAG EELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLD+ GVRDRG+SAAV GGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSA FPEEKDG ADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVD ARGVLQLPRKAGRDDDDD +T DKDE SPGHKLPRPTSKTSSRRGASERLLSR AA
Sbjct: 1590 SRLRGQLQFPSHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDMEAFVLGKTGPTCKGSEDSASRQQSSSARHKATPSSSSWSSSPPTLTPTPVLSQENLDVFITAVVKLLPASLALASPQKPSAEPPGTSVQGGATRNDVTGSGVVYTESGSRVRGPIPGVSSSPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDVNGVRDRGKSAAVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSATFPEEKDGGADAPSALRPHRTVRDRIVKILPGAVLQSDQLSAAVDHARGVLQLPRKAGRDDDDDGITGDKDEASPGHKLPRPTSKTSSRRGASERLLSRCAA 2002          
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: D7G721_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI)

HSP 1 Score: 478 bits (1231), Expect = 3.960e-156
Identity = 253/307 (82.41%), Postives = 260/307 (84.69%), Query Frame = 1
Query:   28 SRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAWNSSAGTEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDLKGVRDRGRSAAVSGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTA 948
            SRLRGQLQFPPHMGNAS MLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVD+EAFVLGKTGPTCK SEE A R                        TPTPVLSQEN DVFIAAVVKLLP SLALA+PQ P  GPPATSV+GGAT   +TGSGV+YAE GSR   PIPGV  SPYEELECLGMVLECLVEACIESLYNGAWNSSAG EELTALGRLLRRCVLPVALCCSKTLR LESQLERALAWRCSQTLD+KGVRDRG+SA V GGSTEGVDFGAARLCRGLLEQCDLCADAVR LGTA
Sbjct:  781 SRLRGQLQFPPHMGNASVMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDMEAFVLGKTGPTCKSSEEPAFRRQSSSARHKATPSSSSWSSSPP--TPTPVLSQENLDVFIAAVVKLLPTSLALASPQKPLTGPPATSVRGGATRNDVTGSGVIYAESGSRVRGPIPGVSSSPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRTLESQLERALAWRCSQTLDVKGVRDRGKSATVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRMLGTA 1085          
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Match: A0A6H5J6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6E0_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 2.630e-90
Identity = 167/208 (80.29%), Postives = 174/208 (83.65%), Query Frame = 1
Query:   25 RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWALSGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRXXXXXXXXXXXXXXXXXXXXXXRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGPPATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVLECLVEACIESLYNGAW 648
            RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHA LTHWALSGRMGRAWG+AAAVVD+EAFVLGKTGPTCKGSEE ASR                 XXXXX     PVLSQENFDVF+A +VKLLPASLALAAPQTPPAGPPA+SVQGGATG  +TG GV+ AEGGSRA   IPGV  SPYEELECLGMVLECLVEACIESLYNGAW
Sbjct: 1156 RSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHAFLTHWALSGRMGRAWGVAAAVVDVEAFVLGKTGPTCKGSEEPASRQQSSSARHKATPSSSSWXXXXXXXXXXPVLSQENFDVFMATLVKLLPASLALAAPQTPPAGPPASSVQGGATGSCVTGRGVICAEGGSRARGSIPGVSSSPYEELECLGMVLECLVEACIESLYNGAW 1363          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17139.5065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G719_ECTSI1.590e-21685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G721_ECTSI3.960e-15682.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6E0_9PHAE2.630e-9080.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17139contigEcto-sp13_S_contig17139:372..3753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score665.6
Seed ortholog evalue1.5e-188
Seed eggNOG ortholog2880.D7G719
Model size1281
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E5QG@1,2SCHA@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011370.1
Cds size1281
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17139.5065.1prot_Ecto-sp13_S_contig17139.5065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17139 372..3753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462896.5942621-CDS-Ecto-sp13_S_contig17139:371..5971681462896.5942621-CDS-Ecto-sp13_S_contig17139:371..597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 372..597 +
1681462896.6082942-CDS-Ecto-sp13_S_contig17139:919..13401681462896.6082942-CDS-Ecto-sp13_S_contig17139:919..1340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 920..1340 +
1681462896.6192489-CDS-Ecto-sp13_S_contig17139:1917..20131681462896.6192489-CDS-Ecto-sp13_S_contig17139:1917..2013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 1918..2013 +
1681462896.6437044-CDS-Ecto-sp13_S_contig17139:2736..29411681462896.6437044-CDS-Ecto-sp13_S_contig17139:2736..2941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 2737..2941 +
1681462896.6627636-CDS-Ecto-sp13_S_contig17139:3195..32911681462896.6627636-CDS-Ecto-sp13_S_contig17139:3195..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 3196..3291 +
1681462896.674882-CDS-Ecto-sp13_S_contig17139:3516..37531681462896.674882-CDS-Ecto-sp13_S_contig17139:3516..3753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17139 3517..3753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17139.5065.1

>prot_Ecto-sp13_S_contig17139.5065.1 ID=prot_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=427bp
MSGTHPFFRSRLRGQLQFPPHMGNASAMLSRTGLPALPFLQHALLTHWAL
SGRMGRAWGLAAAVVDIEAFVLGKTGPTCKGSEETASRQQSSSARHKATS
SSSSWSSSPPRRTPTPVLSQENFDVFIAAVVKLLPASLALAAPQTPPAGP
PATSVQGGATGGGMTGSGVVYAEGGSRAMEPIPGVYCSPYEELECLGMVL
ECLVEACIESLYNGAWNSSAGTEELTALGRLLRRCVLPVALCCSKTLRAL
ESQLERALAWRCSQTLDLKGVRDRGRSAAVSGGSTEGVDFGAARLCRGLL
EQCDLCADAVRTLGTAVRSAAFPEEKDGAADAPSALRPHRTVRDRIVKIL
PGAVLQSDQLSAAVDRARGVLQLPRKAGRDDDDDRMTEDKDEPSPGHKLP
RPTSKTSSRRGASERLLSRFAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig17139:372..3753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17139.5065.1 ID=mRNA_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17139:372..3753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGCACACACCCTTTCTTTCGTAGCCGCCTCCGGGGACAGCTGCA GTTTCCCCCACACATGGGAAACGCCTCCGCGATGCTTTCGAGGACCGGTT TGCCCGCCCTACCGTTCCTACAGCACGCGCTCCTGACGCACTGGGCGCTG TCCGGAAGGATGGGGAGGGCGTGGGGTCTAGCAGCTGCCGTGGTCGACAT CGAGGCGTTCGTGCTGGGGAAGACAGGTAGGTCCGTCGATAGGTGAGATT TTCGCCTCGCCTTTCCTTTTTTATTCGTCCGTGTTTCTCTACGTAGCTGG CCAAAGGTTGAGGTTGGCTGTGATTTACGAATCATAGCCCCACGGGCCCA TCTTTGACGATGGGACAATCTTTGACCCATGGAAGACCTCTCCACCAATG GCTGCCGCGCGCTGAAGTTGACAAGCAGCTCGGCTTGCACACACGCGTGC GCGTGCGGCTCCGCGTACTGTTCCGCTCTCCCCAAGCCGTAAGATATTTT GATTCAGCCCTCCGCGCCCCCTGCCCTCCCCCGTCCCCGCCTCTGCAGGT CCAACCTGCAAGGGCAGCGAGGAAACTGCCTCCAGACAACAGTCGTCGTC GGCCAGGCACAAGGCGACATCCTCCTCTTCCTCTTGGTCGTCATCGCCGC CAAGGCGGACGCCGACGCCCGTCCTCTCCCAGGAGAACTTCGACGTCTTC ATCGCCGCCGTGGTGAAGCTGTTGCCTGCAAGCCTCGCCCTGGCAGCGCC GCAAACACCACCGGCGGGACCCCCAGCAACAAGTGTCCAAGGCGGCGCGA CAGGTGGCGGTATGACGGGTAGCGGAGTCGTGTACGCCGAAGGTGGATCC AGAGCAATGGAGCCCATCCCCGGGGTTTACTGCAGCCCTTACGAGGAGCT GGAGTGCCTCGGCATGGTGCTGGAGTGCCTGGTGGAAGCGTGCATCGAGA GCCTGTACAACGGGGCGTGGTGCGTGAAAGGATAAGGGTCCCTTTTGCAA GGGTCGTTTCTTCTCGTTGCCTTGCTGCTGGCCTTGTCTTTGCGCGGTCG GTCTGTGTTGTCCCCCATGGGTGCATGGTGTCGTACGCTTTTTGACTCTG TCGATACCCCCGTACGTCAATTGTTAAGTGTCGGTTAGACACATAGCGTC CGGACCAACAAAGCGTCCGGACGGGACGTGCATGGCCACTATACTTTATG GCTCCTGTGGCGTGATGGGTGCTCGTCCCATGCGTTGTTGTTTCTCACAC CTAGAACTACTGGTCGGTGCAGAGTGTGGTCAAAATGTTGTTCTATTTTG CTGTTTGGAGAGATATTCGGAAGTCTGTCGTCGTAGCTCGCACTGCCTGT TGTCGTTGTCTTCTTCAGAGCATGCTGGTAGAGTGGCGAACACGCTATTT ACAACCAATGCCTCCTTTGTTTATGGCAGAAACCACCCCCCCCCCCCCCC TTCCTCCCCCCTCGGACTCATTCGCCGCCGGGTGAACCTACTGATGGCCT TGCAATGGTTCCACTCGGTCTTTTTTGGTGGGTCATTTGCGAACAGGAAC TCATCTGCGGGGACAGAAGAGCTAACAGCACTAGGCAGGCTGCTGCGGCG GTGCGTGCTGCCCGTGGCCTTGTGCTGCTCCAAGACCCTCAGGTAACGTA ACCCTGTTTAGGCTTCTTCTGCTTGAGGGTGTTTTTATTTGTGTTTGTGT TTGTGTTTGTGTTTGTGGTTGTTGAGCTCGGCGTGCAGCAAAACACACGA CTTGCTTGTGTAGCAACCGATGTCAAACCACTACTAGCCCAGTCAGCGTC TCACCATATGACCAGACAACATCCAACCATTACACCTGTCAGCATCGAAT CATTTGACCAAACAACATCGTCAGCACTGGCTGGTCGAATGGTTTAATTT GGGTTGCTAAAGGCCGCAGGCGGAGGTTTCGTCGCCCTGTAGTAGGTCAC TACTCTGCGCGGCACGCGTTATCTGGGTACATACGACGGCACACACGGAG CCTTCTTCCGGGAACTTTGTGGCATGATCTGCTCTGTACTTTCCTAACGC CTCCCTCGCTCCGTCCTTGATGGATGGAGGGCTTGCTGCTTTGCCTCCCA AGTCTTCGTATGAAGGCAGAAGAAACGTTTCGAGAATGTTTATGACGCCA TGGCGCAGCTGCATGTGGATGCCTGGTGGTGAATGGGGCCGCCGGCCCTT CCCAAAAACATGCACAACAGCCCAACACTCGAATGTATCCACACACAAAA TATGTTTCGTGTTCATGTTTTTTTATCCCGCTACAAGACCTGCGTCTTTT TAATTCGTGTGCCTATTAGCGCGGTCGATGCTAATTCGAAATCACACGAA ACGTTGGCTTTTTAGGGCGCTAGAGAGCCAACTGGAGCGAGCTCTCGCCT GGCGGTGTTCCCAAACGTTGGACCTGAAAGGCGTGCGGGATAGGGGACGG AGTGCTGCGGTCTCCGGTGGTTCAACCGAGGGGGTGGACTTTGGTGCGGC GAGGCTGTGCAGAGGGCTGCTGGAGCAGTGCGATCTGTGTGCCGATGCCG TCAGGACGCTTGGCACGGCGGTGAGCCTGGCAGCGAAAGCTTGTGCTACA GCAAGTGGGCGCGGTGCAAGTGCCTCGTACATAGTATGGGCGCGGCTGAA TTTGGCGACACCTGTGTTGGAATTTCAACCTATTTCGACCGTAGTTCGTC CCTCTCCGCTTGCGTTACCTGGTGGCGGAGTGTTTTTCTTGCTTTGGCGA CATACGACGTGCTTTCGATCTCAACCTGTTGAAACTTTACTCCCGTCTGT GTTTTTTCCCCCTTCCCGCTCTAGGTTCGCTCTGCGGCTTTTCCTGAAGA GAAAGACGGGGCTGCAGACGCCCCCTCTGCACTGAGACCCCACCGAACCG TTCGAGACCGCATCGTCAAGGTGACCGGAGAGCAGCAGCGTACGGAGGTC CTGGTTTCTGCTGTCGCACGTGATGGTCACACCGTAGACTCCCTGCTGCG TGCCCCCCTCCCGCCATTGGTTCGTCGGGCATGCATGCCTATCTATTAGC GATGTCGCTGACTTCATCCCGCCCTCTTTCTCCCCTTTTGCCCCTCGCGT CCTCACTCTACATGCCGTGGCATGTCCGTCCATGAAAATGACCAGATCCT TCCCGGCGCGGTGTTGCAGAGCGATCAGCTCTCCGCCGCGGTGGATCGCG CTCGCGGGGTGCTGCAGCTGCCGCGGAAGGCCGGGCGGGACGACGACGAC GACAGGATGACCGAGGACAAAGACGAACCGTCCCCTGGTCACAAGCTTCC CCGACCGACGTCGAAAACCTCTAGTAGGAGAGGAGCGTCCGAGCGCCTCT TGTCGCGATTTGCTGCTGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17139:372..3753+

>mRNA_Ecto-sp13_S_contig17139.5065.1 ID=mRNA_Ecto-sp13_S_contig17139.5065.1|Name=mRNA_Ecto-sp13_S_contig17139.5065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17139:372..3753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGCACACACCCTTTCTTTCGTAGCCGCCTCCGGGGACAGCTGCA
GTTTCCCCCACACATGGGAAACGCCTCCGCGATGCTTTCGAGGACCGGTT
TGCCCGCCCTACCGTTCCTACAGCACGCGCTCCTGACGCACTGGGCGCTG
TCCGGAAGGATGGGGAGGGCGTGGGGTCTAGCAGCTGCCGTGGTCGACAT
CGAGGCGTTCGTGCTGGGGAAGACAGGTCCAACCTGCAAGGGCAGCGAGG
AAACTGCCTCCAGACAACAGTCGTCGTCGGCCAGGCACAAGGCGACATCC
TCCTCTTCCTCTTGGTCGTCATCGCCGCCAAGGCGGACGCCGACGCCCGT
CCTCTCCCAGGAGAACTTCGACGTCTTCATCGCCGCCGTGGTGAAGCTGT
TGCCTGCAAGCCTCGCCCTGGCAGCGCCGCAAACACCACCGGCGGGACCC
CCAGCAACAAGTGTCCAAGGCGGCGCGACAGGTGGCGGTATGACGGGTAG
CGGAGTCGTGTACGCCGAAGGTGGATCCAGAGCAATGGAGCCCATCCCCG
GGGTTTACTGCAGCCCTTACGAGGAGCTGGAGTGCCTCGGCATGGTGCTG
GAGTGCCTGGTGGAAGCGTGCATCGAGAGCCTGTACAACGGGGCGTGGAA
CTCATCTGCGGGGACAGAAGAGCTAACAGCACTAGGCAGGCTGCTGCGGC
GGTGCGTGCTGCCCGTGGCCTTGTGCTGCTCCAAGACCCTCAGGGCGCTA
GAGAGCCAACTGGAGCGAGCTCTCGCCTGGCGGTGTTCCCAAACGTTGGA
CCTGAAAGGCGTGCGGGATAGGGGACGGAGTGCTGCGGTCTCCGGTGGTT
CAACCGAGGGGGTGGACTTTGGTGCGGCGAGGCTGTGCAGAGGGCTGCTG
GAGCAGTGCGATCTGTGTGCCGATGCCGTCAGGACGCTTGGCACGGCGGT
TCGCTCTGCGGCTTTTCCTGAAGAGAAAGACGGGGCTGCAGACGCCCCCT
CTGCACTGAGACCCCACCGAACCGTTCGAGACCGCATCGTCAAGATCCTT
CCCGGCGCGGTGTTGCAGAGCGATCAGCTCTCCGCCGCGGTGGATCGCGC
TCGCGGGGTGCTGCAGCTGCCGCGGAAGGCCGGGCGGGACGACGACGACG
ACAGGATGACCGAGGACAAAGACGAACCGTCCCCTGGTCACAAGCTTCCC
CGACCGACGTCGAAAACCTCTAGTAGGAGAGGAGCGTCCGAGCGCCTCTT
GTCGCGATTTGCTGCTGCTGCTGCTGCTGCT
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