mRNA_Ecto-sp13_S_contig17102.5047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17102.5047.1
Unique NamemRNA_Ecto-sp13_S_contig17102.5047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17102.5047.1 vs. uniprot
Match: D8LEJ1_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ1_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.430e-42
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:   52 SSMRESCQALRSKADRQRKHNKFLNLPGGGRIPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKV 270
            SSM+ESCQALRSK DRQRKHNKFLNLPGGGR+PYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKV
Sbjct:  187 SSMQESCQALRSKVDRQRKHNKFLNLPGGGRVPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKV 259
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17102.5047.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.770e-41
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   49 NSSMRESCQALRSKADRQRKHNKFLNLPGGGRIPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVA 273
            NSSMRE CQALRSKADRQRKHNKFLNLPGGGR+PYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVA
Sbjct:   66 NSSMREFCQALRSKADRQRKHNKFLNLPGGGRVPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVA 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17102.5047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEJ1_ECTSI1.430e-4295.89Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5JZN2_9PHAE1.770e-4197.33Helicase ATP-binding domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17102contigEcto-sp13_S_contig17102:2225..3191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score150.2
Seed ortholog evalue4.6e-34
Seed eggNOG ortholog2880.D8LEJ1
Model size275
KEGG koko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
Cds size273
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.162343-CDS-Ecto-sp13_S_contig17102:2226..22961681462895.162343-CDS-Ecto-sp13_S_contig17102:2226..2296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17102 2227..2296 -
1681462895.1780832-CDS-Ecto-sp13_S_contig17102:2528..26411681462895.1780832-CDS-Ecto-sp13_S_contig17102:2528..2641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17102 2529..2641 -
1681462895.1925905-CDS-Ecto-sp13_S_contig17102:3101..31911681462895.1925905-CDS-Ecto-sp13_S_contig17102:3101..3191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17102 3102..3191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17102.5047.1prot_Ecto-sp13_S_contig17102.5047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17102 2227..3191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17102.5047.1

>prot_Ecto-sp13_S_contig17102.5047.1 ID=prot_Ecto-sp13_S_contig17102.5047.1|Name=mRNA_Ecto-sp13_S_contig17102.5047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
TRGGGGRRRRRQKRNSNSSMRESCQALRSKADRQRKHNKFLNLPGGGRIP
YDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVA
back to top

mRNA from alignment at Ecto-sp13_S_contig17102:2225..3191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17102.5047.1 ID=mRNA_Ecto-sp13_S_contig17102.5047.1|Name=mRNA_Ecto-sp13_S_contig17102.5047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=967bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17102:2225..3191- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTAGGGGAGGCGGCGGCCGACGGCGGCGGCGACAGAAACGCAACTCGAA
CAGTAGCATGCGGGAGTCTTGCCAGGCCCTGCGGTCAAAGGTGAGTAAAT
CGGGGGATATACTTACCTACCCGTGGTTTTCACCGACGTGTTGTTGTTTT
TTATCGCCTCGATTGAATTTGACCCTAAAATAGTAACACACTTCAACTTC
AACAATAACGCAGATACACTTCAACATTGGAGCGATTTTGACCTGTTGCG
TGGGTTCCATTTGTTGAAATTCCGTCGTCAGCTGGTGCTGGCGTTTACAA
TATATTCCTTCGGATTATCGTTTGTAAATGTTTATGTTCGAGGCGTTACT
GGTTCTTGTTTCGCCAATACGGCTCCATTGTTGCTTTTCGCGTGAAAGCT
GTGTTCGTGCTGCTATTGATTGGTTTTGTACAGGGGCCGTGATTGCCTCT
TTTGTCTTGCTGACTGCGAGCCTCTTCGTCTTACCGATGACGAGTCTTAA
GTCATCCTTTTCTTTGTTGCTCTTGCGTTGCTGCCGCTATGCTACTACAG
GCGGATAGGCAGAGAAAGCACAACAAATTCCTAAACCTTCCGGGAGGCGG
AAGGATCCCCTACGACCAAGATGCCCCCGACCTTACCCTTGACCTCGCCA
ACATCGAGGGCAGGTATGCACATGACACGCGGCCCCCTTCTTAGCGCCAC
GCTGCTGCACGGCGCGGTGCTTTTTGTCGTACCTGGCAAAGGCTACTCGC
TTGGTTACGAAGTATCATCGTCTTCGATGCCCTTGGGAACTGCTGCTGTT
GCTGTCTCACACCGACGTTTCCCGCGCCTGTCCTGTTATTTGTTTATTTT
TCGGTTTTTTTCTTTTTTCTTGTCTCCTTCTCCATCACCTCGCAGACTGA
CCGAGAAGGAGAAGGAACACGCAGCCTGCCCCTTCTACCGCTCCATGTCC
GCGCCGAAGGTGGCCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17102:2225..3191-

>mRNA_Ecto-sp13_S_contig17102.5047.1 ID=mRNA_Ecto-sp13_S_contig17102.5047.1|Name=mRNA_Ecto-sp13_S_contig17102.5047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17102:2225..3191- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTAGGGGAGGCGGCGGCCGACGGCGGCGGCGACAGAAACGCAACTCGAA
CAGTAGCATGCGGGAGTCTTGCCAGGCCCTGCGGTCAAAGGCGGATAGGC
AGAGAAAGCACAACAAATTCCTAAACCTTCCGGGAGGCGGAAGGATCCCC
TACGACCAAGATGCCCCCGACCTTACCCTTGACCTCGCCAACATCGAGGG
CAGACTGACCGAGAAGGAGAAGGAACACGCAGCCTGCCCCTTCTACCGCT
CCATGTCCGCGCCGAAGGTGGCC
back to top