mRNA_Ecto-sp13_S_contig1710.5045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1710.5045.1
Unique NamemRNA_Ecto-sp13_S_contig1710.5045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: D7G631_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G631_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 3.160e-135
Identity = 250/254 (98.43%), Postives = 252/254 (99.21%), Query Frame = 1 
Query:    1 MPSADAGGLAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSADQRARDLEEKMPATRASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRPRRVRRFRS 762
            MPSAD+GGLAQ+TAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSAD RARDLEEKMPATRASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PLRPRRVRRFRS
Sbjct:    1 MPSADSGGLAQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSADHRARDLEEKMPATRASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLRPRRVRRFRS 254
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A836CII2_9STRA (Sld5 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII2_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.900e-53
Identity = 101/192 (52.60%), Postives = 136/192 (70.83%), Query Frame = 1 
Query:    4 PSADAGGLAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDI-EEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSADQRAR 576
            P ++A  L  ++  ELE++A D ++E+VP   H  LH  +G +GPFV  +R  VPLWLAI LK+R K  IACP +M+   LE+VL  ER +   F  LP HYLEI+SLLL+ A+DD+ ++ DR+R LLED+ENVR+ KMY+GMG AAQ    A+KVN +GAMELLPVR+FF+ AL+S+Y +SG K   + AR
Sbjct:    9 PGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREET-FAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVAR 198
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A4D9D8T4_9STRA (DNA replication complex GINS protein PSF2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8T4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.590e-46
Identity = 84/181 (46.41%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:   28 AQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQ-----AVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 555
            AQ  ++E+EF+AE+ +IEI  +F H PL LI+G FGPF P  RAKVPLWL ++LKK++KC++  P ++   +L +VLR+ER    +F  LP +Y+EIA+LLL TA+D+   PDR R+L+ED+ENVR  K+  G+   +  V +     + K+N +GAME+  VR F  EA+   Y +SGQ+
Sbjct:    3 AQSRSSEMEFLAEEMIIEIEARFNHPPLKLIRGTFGPFYPNQRAKVPLWLGLSLKKQKKCRLVLPEWLDSEHLAEVLRQERAQEGIFQDLPFYYVEIATLLLATAADEFPMPDRTRSLVEDIENVRMEKIRRGLQGMSDTVLRGRSVMSTKMNHVGAMEITTVRGFLTEAMGLFYTLSGQE 183
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A7S2D0T8_9STRA (DNA replication complex GINS protein PSF2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0T8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.320e-44
Identity = 87/200 (43.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:   37 TAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQ------AVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSAD------QRARDLEEKMPA 600
            T  E+EF AE+ L+EI+P+F HG  H I GDFGP VP    KVPLWLA+TL+KRQKC+I  PS++   +L ++L  E+ D   F  LP HY+EIA+ L+ T+++DI + +RVRT+LED++N+R +K+  GM   A +V++      AVK+ ++ A+EL  +R F   AL   Y +S Q SA        R R ++   P+
Sbjct:    6 TVDEIEFRAEEELVEIIPRFAHGIFHFISGDFGPLVPPVPVKVPLWLAVTLRKRQKCKIQPPSWIDYDHLSKILENEQNDLDSFQELPFHYIEIAASLIATSAEDIPDCERVRTILEDIQNLRWSKIRRGMQLIADKVKEDDERITAVKLTNVSALELHAIRPFMTGALNQFYRLSQQPSAQPGLASRSRRRSIQRSSPS 205
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A6J1D7Q0_MOMCH (DNA replication complex GINS protein PSF2 n=3 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1D7Q0_MOMCH)

HSP 1 Score: 158 bits (400), Expect = 3.080e-41
Identity = 86/171 (50.29%), Postives = 110/171 (64.33%), Query Frame = 1 
Query:   25 LAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLY 537
            LA  +A E+EF+AED L+EIVP  +  PLHLI GD+GPF PQ  A+VPLWLAI LKKR KC I  P +MSV  L Q+L  ERE    F  LP HY+EI+ LL + A DD+ +   VR+L+ED+ +VR  K+   + S       AVK+ DL AME+  VR F   AL ++Y
Sbjct:    9 LALFSAEEVEFVAEDELVEIVPNMRMDPLHLICGDYGPFYPQIAAEVPLWLAIALKKRGKCAIRSPEWMSVEKLTQILEAERESQGAFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTS-AVKIKDLSAMEVNIVRPFVGRALQAIY 178
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A388JJI9_CHABU (Sld5 domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JJI9_CHABU)

HSP 1 Score: 157 bits (397), Expect = 6.650e-41
Identity = 79/165 (47.88%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:   43 AELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLY 537
            AE+EF+AED LI IVP F+   +H++ GDFGPF PQ   KVPLWLA++LKKR+KC +  P +M+V  L +VL  ERE   VF  LP HY+EI+ LL + A +D+ +  ++RTL+ED+ NVR  K+  G+    +  + AVK+N++ AME+  +R FF +AL   Y
Sbjct:    1 AEMEFLAEDELISIVPNFRSDGMHMLCGDFGPFRPQIPVKVPLWLALSLKKRRKCTLQTPDWMNVDNLARVLEEERESTGVFQELPFHYIEISQLLFDNAIEDLCDHYKMRTLIEDIRNVRFNKIQNGL-QQLEGKKNAVKLNNVSAMEINIIRPFFIKALERFY 164
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: UPI001FB0930E (DNA replication complex GINS protein PSF2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0930E)

HSP 1 Score: 157 bits (397), Expect = 1.070e-40
Identity = 89/182 (48.90%), Postives = 118/182 (64.84%), Query Frame = 1 
Query:   31 QVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVS---GQKSADQ 567
            + +AAELEF+AED +IEIVP  K G L+ I GD GPF PQ  AKVPLWLA+ LKKR KC I  P +MSV  L QVL  ER+D AV  PLP HY+EI+ LL + A DDI +   VR+L+ED+++VR  K+  G+   ++    A+K  ++ AME+  VR F  + L + Y +    GQ  AD+
Sbjct:   11 EFSAAELEFLAEDEMIEIVPNMKMGTLNFICGDLGPFHPQLAAKVPLWLAVALKKRGKCTIQPPEWMSVDKLTQVLEAERDDKAVCQPLPFHYVEISRLLFDHARDDIADVYMVRSLIEDIKDVRFHKIGTGLEKISERTS-ALKFKNVSAMEVNIVRPFVVKTLETFYKLDSPDGQDVADR 191
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A833QQX9_9POAL (DNA replication complex GINS protein PSF2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QQX9_9POAL)

HSP 1 Score: 157 bits (397), Expect = 1.100e-40
Identity = 85/167 (50.90%), Postives = 109/167 (65.27%), Query Frame = 1 
Query:   37 TAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLY 537
            +A E+EF+AED +IEIVP  +   L+L+ GDFGPF+PQ   KVPLWLA+ LKKR KC I  P +MSV  L QVL  ERE    F PLP HY+EI+ LLL+ A DDI E   VR+L+ED+ NVR  K+  G+ + +     AVK+ +L AME+  VR F    L + Y
Sbjct:   13 SAPEVEFLAEDEMIEIVPNIRMDALNLLCGDFGPFLPQIACKVPLWLAVALKKRGKCSIRTPDWMSVEKLTQVLEAERESPREFQPLPFHYVEISRLLLDHAHDDIPEVYMVRSLIEDIRNVRFHKVESGLETISGRTH-AVKLKNLSAMEVNIVRPFMVRVLQAFY 178
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A2Z7API4_9LAMI (DNA replication complex GINS protein PSF2 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7API4_9LAMI)

HSP 1 Score: 156 bits (395), Expect = 1.710e-40
Identity = 84/185 (45.41%), Postives = 121/185 (65.41%), Query Frame = 1 
Query:    1 MPSADAGGLAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 555
            M  A     +  +AAELEF+AED ++EIVP F+  PL+ I GDFGPF+PQ   +VPLWLA++L+KR KC I  P +MSV  L QVL  ER D+  F PLP HY+EI+ LL + A +DI +   VR+L+ED+++VR  K+  G+   ++E   A+++ +L AME   VR F  +AL + + +S  +
Sbjct:    1 MAGASGSNASAFSAAELEFLAEDEMVEIVPNFRMEPLNFISGDFGPFIPQMPTEVPLWLAVSLRKRGKCTIRTPEWMSVEKLTQVLEAER-DSEKFQPLPFHYVEISRLLFDHAREDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISKERTYALRLKNLSAMEANIVRPFVTKALETFHKLSSSE 184
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BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Match: A0A022QLV8_ERYGU (DNA replication complex GINS protein PSF2 n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QLV8_ERYGU)

HSP 1 Score: 156 bits (394), Expect = 5.150e-40
Identity = 87/179 (48.60%), Postives = 116/179 (64.80%), Query Frame = 1 
Query:    1 MPSADAGGLAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLY 537
            M SA     +  +AAELEF+AED LIEIVP  +  PL+ I GDFGPF PQ   +VPLWLA+ LKKR KC I  P +MS+  L QVL  ER D+  F PLP HY+EI+ LL + A +DI +   VR+L+ED+++VR  K+  G+   ++E   A+++ +L AME   VR F   AL +LY
Sbjct:    1 MSSASEPHASAFSAAELEFLAEDELIEIVPNLRMDPLNFISGDFGPFRPQIATQVPLWLAVALKKRGKCTIRAPEWMSIDKLSQVLESER-DSEKFQPLPFHYVEISRLLFDHAREDIPDIYMVRSLVEDIKDVRFHKIGTGLEIISKERTYALRLKNLSAMEANIVRPFVTRALETLY 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1710.5045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G631_ECTSI3.160e-13598.43Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CII2_9STRA3.900e-5352.60Sld5 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9D8T4_9STRA4.590e-4646.41DNA replication complex GINS protein PSF2 n=2 Tax=... [more]
A0A7S2D0T8_9STRA5.320e-4443.50DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A6J1D7Q0_MOMCH3.080e-4150.29DNA replication complex GINS protein PSF2 n=3 Tax=... [more]
A0A388JJI9_CHABU6.650e-4147.88Sld5 domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001FB0930E1.070e-4048.90DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A833QQX9_9POAL1.100e-4050.90DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A2Z7API4_9LAMI1.710e-4045.41DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A022QLV8_ERYGU5.150e-4048.60DNA replication complex GINS protein PSF2 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1710contigEcto-sp13_S_contig1710:10264..14634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score407.9
Seed ortholog evalue3.4e-111
Seed eggNOG ortholog2880.D7G631
Preferred nameGINS2
Model size1888
KEGG koko:K10733
KEGG ModuleM00286
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022616,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032784,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902315,GO:1902806,GO:1902808,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:2000045,GO:2000112,GO:2001141
Exons4
EggNOG free text desc.double-strand break repair via break-induced replication
EggNOG OGsCOG5093@1,KOG4071@2759
Ec32 ortholog descriptionGINS complex
Ec32 orthologEc-11_004910.1
Cds size765
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.0214567-CDS-Ecto-sp13_S_contig1710:10263..104661681462895.0214567-CDS-Ecto-sp13_S_contig1710:10263..10466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1710 10264..10466 +
1681462895.0324776-CDS-Ecto-sp13_S_contig1710:11490..116421681462895.0324776-CDS-Ecto-sp13_S_contig1710:11490..11642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1710 11491..11642 +
1681462895.0420763-CDS-Ecto-sp13_S_contig1710:12774..128841681462895.0420763-CDS-Ecto-sp13_S_contig1710:12774..12884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1710 12775..12884 +
1681462895.051691-CDS-Ecto-sp13_S_contig1710:13211..135111681462895.051691-CDS-Ecto-sp13_S_contig1710:13211..13511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1710 13212..13511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.0643208-UTR-Ecto-sp13_S_contig1710:13511..146341681462895.0643208-UTR-Ecto-sp13_S_contig1710:13511..14634Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1710 13512..14634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1710.5045.1prot_Ecto-sp13_S_contig1710.5045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1710 10264..13511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1710.5045.1

>prot_Ecto-sp13_S_contig1710.5045.1 ID=prot_Ecto-sp13_S_contig1710.5045.1|Name=mRNA_Ecto-sp13_S_contig1710.5045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MPSADAGGLAQVTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQ
ARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLP
HHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEV
QQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSADQRARDLEEKMPA
TRASGGGDDNAGGGGGDDDVGDAAAGLGAVEAAAAGGGEEEEPLRPRRVR
RFRS*
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mRNA from alignment at Ecto-sp13_S_contig1710:10264..14634+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1710.5045.1 ID=mRNA_Ecto-sp13_S_contig1710.5045.1|Name=mRNA_Ecto-sp13_S_contig1710.5045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1710:10264..14634+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCTGCTGATGCCGGGGGGCTGGCCCAGGTGACAGCCGCAGAGTT
GGAGTTCATTGCCGAGGATGCGCTCATCGAGATCGTCCCCAAATTCAAAC
ACGGCCCGTTGCATCTGATCCAAGGCGACTTCGGTCCCTTCGTGCCACAG
GCGCGGGCGAAGGTGCCGCTGTGGCTGGCTATCACCCTCAAGAAGAGACA
GAAGTGAGTGCGGTGTACTCGATGCTATTGTTTCATGCGTTTTGGTTTGT
GAGAGTTTGTTTGCAATCTCCCATTTAGTAAGACATGTTTGAAATTTGAA
ACCTTGTGGACACCTTCGTCATATGCCGCACGTAAGATATCATGCTCCGT
TGACTGGTATTCTAAGCTCGACTTTCTCGACATCTAGGACAACAGTGACT
CTGTGCCGAAAACGGCGGCGTTGGAACCGTCTCGCCGAAGGCATTCAGAT
ATCGTACGATTTGAGTTCGGCATCGTCGTGGGAAACTGAGCTCTAACTAT
GGATGAAGTATGTGTTTCTGGTCCAGGGGGGTGTGGTATCTTACGCAACG
TACGGTACTTTGAGTTTGAGCACGGACATTGATGCATTTAGACGTAGAAG
CATACAACAGTTTGTGAGTTTTTACAGACGGTGGAGGCCGAACCCAGAAC
AATTAGGTGCATGTCCTGCCGGAGAGAGAATCGCTCGGTGTTGATGGTGG
TGGGGTTTCCCCTTGCACTGCAAGGGGCAACAAAGCTCAGCAAATGTGTG
TTGAGTTGTATACCTGACAGGTCGTTGCGGCAGCTTGTTGCATTTCCGCC
ATTGTAGCTAATGAAACGTCCCCACCGTTCGCCTGGGCGAGCGAGATTTT
ACCATAGCGTCCAAACGTACGTGCGACACGTCACAGCTCCTCAATATGTA
GCCGTCCCCGTTTCCGCCCTTTGCTGCAACACACCACGACATACCACACA
GCAAGGCGATTGCCGGATGCCCGCCCTCGTCGTACCCGGGACAGACTTTG
TCATGATCTACAAACACGGCTCCCGGCGTACAGCAGGATACGTCGAGTAC
TGGCTATATGTTGACCTCGCTGGAAGTGCACGCCTGAGCGACCCCCACGC
ATTCTTTTTTCTCCCCCCGCATCAAACATCAAATAGTCTAACCGCTAAGG
CGAGCAACGCATGAGTAGCCCCCCCCCTCAAACCACCAAAATGACGGCAC
ACATTTGTTTGACGCCCAACCCTCCAGGTGCCAGATCGCGTGCCCCTCCT
TTATGTCGGTGGGCTACCTGGAGCAAGTGCTTCGGAGAGAGAGAGAGGAC
GCCGCGGTCTTCACTCCCCTGCCGCACCACTACCTGGAGATCGCGAGCCT
GCTGCTCAACACGGCGTCTGACGACATCGGTAGGTTTGGTTGGCGTTAGA
CGTGCCGTTTTTCCATCCCGCACTGCCGTCTGCCGCTGCTTTGACTTGTG
GTTCGAAGGACGCTGAACAAGGGAAGGCGGACCCTTGATATGTCGCATGT
TGTTTGCATTGTTTTTGCTTGTTTCGCTGCTGCCTCGAGATGCTGATCGT
ATACCCATGTGCAGTGGTGAGAAGAGCCATGGACCCCGCTGCTAAACACG
ACGCGTTGACGAGTCGGGGTACAACGTTGTCACGGACTGCAACGACAATC
AGTTTCAGATACGGCTTCTCCGTAGCGGTGTCTCCTGGATAGCGAGTTGC
ACTGTGCGCCAGTGTCTTTTACCCCCGAATCATCGTAGAGATCGCCTGCC
TGTTGCACAATCCGACGGCGCCGTCCGTCAGGTGTGGTGGTGGTTGTTGG
TGGTGGTGATGGTAGAATACCTTCTCACAAAAAACACGGGTCAGCTTGTG
CTCCCCGGCCCCTCTCTTTCTTGTCGTGTATCGCCCTTGCCGGTGACGGG
ACCTCCCTTGCGGTCAACGGGCCAACCCCGACTATCAGTTGAGAGGAAGA
GAGAAGAGAGCAGGGAAGGGCAAGAGAGGCGGTCGACTTTTTGTGCTCCC
GTTCTCGCCGCCAATGGGATTCCGAAATATGCTTGTCTGTGAGATATTCA
CACTGAAACAAGGGCTGCCGTCCCTTTCTCCTGCGGAGGGCACGCGGGTA
CACGTACAAGGGTTATGGGGATGTTAAATAATGTTGCGGTGGTCAACTGG
TGTCCGTGGTTTTGTATACGGAGAAAGTATGGTGCGTGCGCGACCTTCTC
ATCGTCAACGACTGGTTGGCGTTTCTCAACGTAAGGTATCTACCGTACCG
GTGCTGCTCCGTCTCGAAATGGGCCACAGCTACCAACGGTCATGACTTGA
GGCAAAGTTGCTACGCCGAACCCGCGCCTATTACAAACCGCGACGTGGGA
CGTGCTCCGTACCGGCCTAGAAATTGATATGAGGGTCTTATCTGACCACG
CGCTATGTACTGCCCCCCTCCCCCACCTCTTCCATGGCCTAACTGCTAGG
AAATGCAAAAAATGAGTACAACCTCCCGCCTCCACCTCCGTTCACCCCGG
CGTGCTTGCAGAGGAGCCGGATCGCGTGCGAACGCTCTTGGAAGACGTGG
AGAACGTTCGTCGAGCGAAGATGTACGAGGGTATGGGCTCCGCGGCCCAG
GAAGTCCAGCAAGCCGTCAAGGTGACGGACATGGAAAAAAGAAGTACGAA
ACAAAGATTTCATGTACAAATCAGATCGTGGGAACGCACGACGAAATTGT
TAAGCATGTCTCTTCGTGACCTCCTGTCTCATGCTCAAGCCACTTGCTTC
GCTCTTCCACCACGCCAACACCACTACCTTCGGCTGTCTCATGCTCTACC
CTCTTTCTTGACTTGGCCACCACACCAAAACACCACCACCACCACCACTG
CTGCTGTCTCCAGCTCAAGCCGCTTTCTTCACCTTTCCACCAAACCCGAA
ACACCACTGCATGCGGGTGGGGTGCTATTTTGATGCTGTTCATCCCAGGT
TAACGACCTGGGTGCGATGGAGTTGCTCCCGGTGCGATCCTTCTTCGCCG
AAGCGCTCGCCAGCCTCTACGTCGTATCCGGGCAGAAGTCGGCCGATCAG
CGGGCGAGGGATCTCGAGGAAAAGATGCCTGCCACCCGTGCGAGCGGCGG
CGGCGACGACAACGCGGGCGGTGGGGGCGGGGACGATGACGTCGGGGATG
CTGCTGCGGGGTTGGGTGCGGTGGAGGCGGCGGCGGCAGGGGGCGGGGAA
GAGGAGGAGCCGTTGCGACCGAGGAGGGTGCGGAGGTTCCGGAGCTAATG
CTGCCGCTGCTGCTGCTGGTATCATGGCTAGGATACCATTACGAGGAATG
GCCTCGCTTTTTGAGACTCTTTTGGCTGTATCTTGAAACAATGACGCGGG
TTTTGTAATGTACTGGTTTAATTTTCTGGGGATGGCGATTTATGGTGATT
TTTTTCAGCGCCCTGAACAACACTCCGGTACCTTGTTTCGCTTTTGAGGT
AACGTTTCCGCGTTTGGGGCGTTCGGTGATGCCTTCCCACATGCAGCGGC
AGTCCTACTGCTGTTACCTGAGGCTGATACTAATATTTTCTCAGTGTAGA
CTGCTGTTCGGGGTTTGGTCCGGTCGTTTCCGCGAAAGCGTGCTTTGTGG
TGTTTCTCTACTGTTTACTCTAGTGTGCATGTTGTTGTAGCGGTGTAGTA
GGGCGCTATACCCTAATAGTGTTGATGGTGTAGATTGCGAGGTTGGAGCT
GGAAAGAGTCTGGAGTTTTTATCATTGCATGCGCGCGATCCCGGATCAGA
GCTTGCTTGGTGGCGGAGTTTGATGCGAGGGCATGCATGGTACTCGGAGG
GTAGGGGTTTCCTGTGTAGGCGGCCAACCGAACGTGGAAAGCGGAAATAC
AGATGCGTGTCTATGGATACTCACTCCCACAAATATTTTAAGATCTGTAT
GGGAACATTTAGGAGCACGCGTTATTTTTAGATTGTAGGTCGTCAAGGTG
GGGGTGTCGTTGTTGATCGCCGCAGGAGGTGGTAGCACCGCTAGGTTTAC
TCCATCCATTAGACTGCAGATGGAGACACGCGTACGTATGATGAGTGCTT
GCGCAGGTTCACCCCCGGCTAGCCACATGATATACGCCATGTCACTGGAG
CGCTCTAGGGGGGATCCCGTTTCGCAGCGTGCACAACTCTTCTATCGATG
ACCCCTCGTGCGTGTGTAGTGTGGAAGCCACAGCTGCTGCTGTGCCTTGT
GGGGGTTTGCCCTTTTCGTACATGCATTATTTTCATGGGCCATTGTGTGG
TATGGGTATAAGGATGTGATGATTGTGAAACACCCGGGGGCGGGTTCCGT
TGGTGGTTGCCTGTGCTTTGAAATCATTGCACGATTCCGTCATGGCACGG
AGAAAAATGGCTAGCAATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1710:10264..14634+

>mRNA_Ecto-sp13_S_contig1710.5045.1 ID=mRNA_Ecto-sp13_S_contig1710.5045.1|Name=mRNA_Ecto-sp13_S_contig1710.5045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1710:10264..14634+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCTGCTGATGCCGGGGGGCTGGCCCAGGTGACAGCCGCAGAGTT
GGAGTTCATTGCCGAGGATGCGCTCATCGAGATCGTCCCCAAATTCAAAC
ACGGCCCGTTGCATCTGATCCAAGGCGACTTCGGTCCCTTCGTGCCACAG
GCGCGGGCGAAGGTGCCGCTGTGGCTGGCTATCACCCTCAAGAAGAGACA
GAAGTGCCAGATCGCGTGCCCCTCCTTTATGTCGGTGGGCTACCTGGAGC
AAGTGCTTCGGAGAGAGAGAGAGGACGCCGCGGTCTTCACTCCCCTGCCG
CACCACTACCTGGAGATCGCGAGCCTGCTGCTCAACACGGCGTCTGACGA
CATCGAGGAGCCGGATCGCGTGCGAACGCTCTTGGAAGACGTGGAGAACG
TTCGTCGAGCGAAGATGTACGAGGGTATGGGCTCCGCGGCCCAGGAAGTC
CAGCAAGCCGTCAAGGTTAACGACCTGGGTGCGATGGAGTTGCTCCCGGT
GCGATCCTTCTTCGCCGAAGCGCTCGCCAGCCTCTACGTCGTATCCGGGC
AGAAGTCGGCCGATCAGCGGGCGAGGGATCTCGAGGAAAAGATGCCTGCC
ACCCGTGCGAGCGGCGGCGGCGACGACAACGCGGGCGGTGGGGGCGGGGA
CGATGACGTCGGGGATGCTGCTGCGGGGTTGGGTGCGGTGGAGGCGGCGG
CGGCAGGGGGCGGGGAAGAGGAGGAGCCGTTGCGACCGAGGAGGGTGCGG
AGGTTCCGGAGCTAA
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