mRNA_Ecto-sp13_S_contig171.5042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig171.5042.1
Unique NamemRNA_Ecto-sp13_S_contig171.5042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig171.5042.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 8.670e-135
Identity = 200/206 (97.09%), Postives = 200/206 (97.09%), Query Frame = 3 
Query:  204 MLSFSYISCFRSKARYELPKLQEFIVCYRCLSGAFILLLFPLFWVAASEVRPVITPITSFGNGSSWNYGWGRPVLHFGFVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLTSVALATWALLLAYYLSLVIGMCRTRYNFRQLHAGDHNRVLVMRRELAKRSTR-RDDDNIL 818
            MLSFSYISCFRSKARYEL KLQE IVCYRCLSGAFILLLFPLFWVAASE RPVITPITSFGNGSSWNYGWGRPVLHFG VFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDL SVALATWALLLAYYLSLVIGMCRTRYNFRQLHAGDHNRVLVMRRELAKRSTR RDDDNIL
Sbjct:    1 MLSFSYISCFRSKARYELSKLQELIVCYRCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQLHAGDHNRVLVMRRELAKRSTRNRDDDNIL 206
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BLAST of mRNA_Ecto-sp13_S_contig171.5042.1 vs. uniprot
Match: A0A835Z6W0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.940e-36
Identity = 87/216 (40.28%), Postives = 121/216 (56.02%), Query Frame = 3 
Query:  150 EDLVTNAGIACAIGFGLFMLSFSYISCFRSKARY--ELPKLQEFIVCYRCLSGAFILLLFPLFWVAAS-EVRPVITPITSFGNGS-SWNYGWGRPVLHFGFVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLTSVALATWALLLAYYLSLVIGMCRTRYNFRQLHAGDHNRVLVMRRELAK 785
            ++L     I  A   GL      +I+   S  R   E+P+L+  I   R L  A+I LL PL  +AA  +  P+  PIT++ +GS SWNYGWGRP+      F+GMF+D H   R  C+ G+   +VLDT+S+  L TQ  CV  GRC + +  T   L+ L  R++ + A+ T AL    YLS V G+ RTRY +RQLH G HNR   +R+EL +
Sbjct:    2 DELPAPQAIGAAYVAGLCSFVVIFIAALISSRRSVTEIPQLRFLIRALRGLLLAYIALLAPLLTLAARWDAMPIPRPITAYRDGSGSWNYGWGRPMTGMASAFMGMFMDYHPGVRCICMGGLSVGLVLDTISAIDLDTQRYCVAEGRCPMAKGYTAQLLQWLYFREMAACAIGTCALAHILYLSAVTGVFRTRYTYRQLHTGQHNRAAALRKELQR 217
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BLAST of mRNA_Ecto-sp13_S_contig171.5042.1 vs. uniprot
Match: A0A482SH80_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH80_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 4.490e-8
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 3 
Query:  381 FGNGSSWNYGWGRPVLHFGFVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLTSVALATWALLLAYYLSLVIGMCRTRY-NFRQLHAGDHNRVLVMRRELAKR 788
            +GNG SW YG+GRP     F+ +G+F   +   R  C++G +  IV D +S++ +      V + + A     +  GL +   RD+ S+AL    L+LA +LS ++G C  +  +  Q+   D +R   M R   KR
Sbjct:   57 YGNGDSWLYGYGRPSAGVIFIGLGLFGALYPVPRTLCILGCVVQIVCDGISAFQIRDYYRQVLN-KSAPGNGYSEQGLMVYYWRDIVSIALTITVLMLACFLSTILGWCDPQLIHPSQVTGNDADRFDAMHRMRLKR 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig171.5042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQK9_ECTSI8.670e-13597.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6W0_9STRA1.940e-3640.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SH80_9ARCH4.490e-831.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig171contigEcto-sp13_S_contig171:24606..28498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog4787.PITG_08429T0
Model size1530
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG OGs2D00G@1,2SCBE@2759,3Q8NA@4776
Cds size687
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.795543-UTR-Ecto-sp13_S_contig171:24605..252391681462894.795543-UTR-Ecto-sp13_S_contig171:24605..25239Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig171 24606..25239 -
1681462894.8098073-UTR-Ecto-sp13_S_contig171:27602..276771681462894.8098073-UTR-Ecto-sp13_S_contig171:27602..27677Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig171 27603..27677 -
1681462894.8408575-UTR-Ecto-sp13_S_contig171:28364..284981681462894.8408575-UTR-Ecto-sp13_S_contig171:28364..28498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig171 28365..28498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.8307552-CDS-Ecto-sp13_S_contig171:27677..283641681462894.8307552-CDS-Ecto-sp13_S_contig171:27677..28364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 27678..28364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig171.5042.1prot_Ecto-sp13_S_contig171.5042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig171 27678..28364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig171.5042.1

>prot_Ecto-sp13_S_contig171.5042.1 ID=prot_Ecto-sp13_S_contig171.5042.1|Name=mRNA_Ecto-sp13_S_contig171.5042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MAAESEDLVTNAGIACAIGFGLFMLSFSYISCFRSKARYELPKLQEFIVC
YRCLSGAFILLLFPLFWVAASEVRPVITPITSFGNGSSWNYGWGRPVLHF
GFVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCA
VPEHTTLSGLRLLQSRDLTSVALATWALLLAYYLSLVIGMCRTRYNFRQL
HAGDHNRVLVMRRELAKRSTRRDDDNIL*
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mRNA from alignment at Ecto-sp13_S_contig171:24606..28498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig171.5042.1 ID=mRNA_Ecto-sp13_S_contig171.5042.1|Name=mRNA_Ecto-sp13_S_contig171.5042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:24606..28498- (Ectocarpus species13 EcNAP12_S_4_19m)
TGAACTTTTTGTTATTCCTCCGCAACGACATGCATGCTTATGCCCGTTCG
ACCATGCTTATGGGGTGAACAGCGTCCTACAAGCACCGGTCTTCCCTGCT
CTACGTACCGCGGAGCTATACTACCCCGGGAGCAATGGCGGCCGAATCGG
AAGACCTCGTGACCAACGCTGGCATCGCATGCGCCATAGGCTTTGGGCTC
TTCATGTTGTCCTTCTCGTACATCTCGTGCTTTCGTTCGAAGGCTCGTTA
CGAGCTGCCCAAGCTGCAGGAGTTCATCGTGTGCTACCGTTGCTTATCTG
GGGCGTTCATACTCTTGCTGTTTCCGCTGTTTTGGGTGGCGGCATCGGAG
GTCCGTCCGGTGATCACTCCAATCACGTCGTTCGGCAATGGATCGTCATG
GAACTATGGCTGGGGCCGCCCGGTCCTGCACTTCGGCTTCGTGTTCGTAG
GGATGTTTGTGGACACCCATCAAGCAGCTAGGCTTTCCTGCTTGGTTGGC
ATGATGCAGGCCATCGTGTTGGACACGCTTTCCTCGTACGCTCTGGGCAC
TCAGATCGATTGTGTCCAGTCAGGGAGATGCGCTGTGCCGGAACACACAA
CGTTGTCGGGGTTGCGGCTCCTGCAATCTCGAGACCTCACGTCGGTAGCG
TTGGCTACGTGGGCGTTGCTCTTAGCCTACTATCTCAGCCTTGTCATTGG
CATGTGCCGAACACGATACAACTTTCGCCAGCTCCACGCTGGGGACCACA
ACCGGGTGCTGGTCATGCGGCGAGAGCTTGCGAAGCGTAGCACGCGGAGA
GACGACGACAACATCCTATAGACTAGTTTACAACCAACCGGTCAGTGCCC
GTGGACGCACAGCCATGACGACGGCGTCTGTTGCTGCCGTAGCAAGGTGA
GTCTCTTACCCGTTGAACTGAAAAATGCCTGTTTGTGTATCATAGTTTTA
GTCGTACGCTTCGTTGGGCAGGTCAAGAAGAATGATTCCCATCAACGCGT
GTCTATCTTCATGTTCATGTACCCCGGGCAACGGCATCTGGACCTACCGG
TGCAAAAGTGTGGGCGTGCTACAAGGGGGGGTAAATCGTGTTTCATGTAC
AGACTACTCACAGTATTGCGGTCGTGCTACATTTCTTACTGCAAGTACAA
TGTATGGTAGCTCGAAAAAATAAAATCCACGTGGGTTGACCTTGGTTGAC
CGGAAAACTAGCGTGTCTTTATGGCGACGTCGGCTTCATGAGATACTTCG
TGCGACGGGACAAAGGGTACTTCAATGCGACGCCACCTTGCGTGAATCTG
TCGCATGCGTTTGTTGCTGCTGCCGACAATGGGAAACATGTTTGGTTGTC
GCCACGCAGAACAGCCAGACAAGGATGTATGAGTTGATCTTTCTTGCAAA
ACGACCAAAACCGACAGCGGACAGTTGAGACGGCAAAAACAACCCATCCT
ATCATGTACAACCGCATGCGCCAACAGAGTTGTTCGTGTGTAACGAATCA
GAGCGGGACATGTCCTACCGGGGAACACTGATGTATCTTGCAGCGTTTTT
TTAATTATGAAGCGCCTGTGTCGTGTACCGCTGCCGCGCGCGAACCGAAT
ACTGGGGTTGACACGGCAAGATATCCACTCCATCCTAAACATGCACGTCG
CATGTGTTGGCAGAGAGAGTTGTTTGTGACTAGCAAATCAGCGCGGAGCA
TGTCCTGTTGGGGAACATGACTGCACGCTACAGCAGTGTTCAGCAGCATA
TTTGAAGCATGTACAGCAGTACATCTTTGTCGTGTACCGCTGCTGCTGCT
TGCTGTGGATCGCATGTAGGCCATCCTGACTGCATGTATATTTCCACCCA
CCTACATCCATCAGACACACGCAAGAATATGAGACGCTTTGCATGTATGA
TTGCCCTACGCAGTTTTCACATATATTTGTGTGGTTCCTCTCCATGCATG
TCAAAGGGCATGGTGGGCGTTTGTTCGTGTTACGAATAGAGTAGTAGCGA
TTGCGCCTATCGGAGAGGCACCGCAGAGGTTCAAAGCAGGAACTATCGGC
TTGCTGCACAGCAGACGTCGTCGTTCTGCCGACGTTCGTACACACATCCG
TCTGTCCTATAACCGACACTCGCACCGACAACCCAGACGACTATCAAGGT
CAAGTACACTTTGTCTTGTGGCAGCAGGTACTCATGCAGCAGTCGTTGTC
GCGATAGGCTAATTTCCCTGTCTGGTCCATGAAGACAGCAAAAATATTTC
GACCCAAAGACTTCATATTTTTTGCCGTTACTATTGGTTCCCATCCATCA
ATGCGGTCAAGTTAGAGCTCTTCGCGTCCTTCCCTCGCCACGTACACAAC
TCCTCTTCACTCCGGGAGCCGCCGTTGACAGCGGCATTCCCTGATCTCGT
TGAGTTACGTGCACCGTGGTGCATTCCCAGTTCTTCTGTGCTGGCAACTT
TTCCGAACCCTGTGTTCCGTTCGCCTTGCACACAACTATGACGGTCAAAC
ACCGGAAATTTCCACAAGAATGTTGTTCGATTTTTTTTTCCAGGACGAAC
TTCTCACAAATCAGGACGAACTTCTCACAAATCACACCGATATGAGAGCT
TAGGCCGAGACAGTACAAATCTATGTACCGGACGTGCGGCCCTCACATCG
TGAACCCCAACTTCGCTTCTACTACTTCTTTTATTCATCAGCGTGAAGTG
GGGCCACCGGACGCCACCCTGCAACGCGACGTGAAACCTCGCCATGGGTG
TCCTCCTCACATGTAATAAAATGATTATACCGCACACGACTCATCTACAG
CAGTCGAGCGGCGTTGACTTCAGTTTGTTCAAACTTGAATGATTCTCCTA
CCGTGGTCCCCGCCTAGCAGAGACTTTTGTGTACTGTTTTCTTCCATGGT
TTGTTCTCTTTGTTCCATATCGAGGAACACTCTCGATGGTGAAAACGTTA
AACGTGATGGTATACAGTGACACATTGCGATTGTCGCACCTTTACGCTTA
ACACATATATATTGCGGTAGCACGTGGCTTGGTCTTCTTATCGTCGTTTC
ACACCAGTGCGCTCCTTGACACCACACCGACATCCGCTTCTTGTGTCGGC
GTGTTATACCCGAAAAGGCCGAAGCATGTCAACTTGTTGGTGTACAAATT
TACATGAAACGTTTCTTGAACTATACGCCTCACGGTCTAGGTTGAAAACC
AACTTTGAATATCATCGTCTAAGCGCTGTTCGTTGATCTTTTTGCTTCTT
TATCGGCAGGTGCTCGTCGTCAGCGATGTTATATTAGGAGAGGGCGAACG
AACACTACCAGCCTATGGAAACATCGCTGACACCGAGCTGCACTGTTCTA
GCCGACAAGCGTTTGTGCCGCAAGTGTGATCCAAGTTTCGAGTACAGAGA
GCGAGAAATGTGTCGATGCGTGGGAGTAGAGCAGAAGCAACGTGTGTTGG
ACCCAAATGCACACGTAGAAGTACAAGCTGTTGGCAGGGTCACGAGAAAC
CATCCGCAACATTGCATCGCTGGTTCTTGGTCTTGTCGTCGTTGCATGGT
TTGAAAGACCCAGCTTTACTGTGGGCATGCACTCTTGGAGATAAGATTGC
AGCGGTAGCGCGTAGGGCTAAGCCGCTCTGGAGCGCTTACCGCAGGTGCT
TGCTGAAAAGTAAAGAGGCAGCTTGATAGATGCGAGAGGTGGAGCACTAC
TGAGCGTTGTTACGCAACTCGGCGGCCCTCCGAACGATGAGACAAATTAT
GTCGTTAATACTTGCCGATTCTTCTTGTTGGGCCGGATTTTCAAGGTAGA
AGATGAACATGAGAGACAGAGGCGCGCTGGTGAGCTCTTGAACGCTAGAA
GCAGTGAAAAAATATGCATCTACCGTTGCGGACCCTAAATAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig171:24606..28498-

>mRNA_Ecto-sp13_S_contig171.5042.1 ID=mRNA_Ecto-sp13_S_contig171.5042.1|Name=mRNA_Ecto-sp13_S_contig171.5042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:24606..28498- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCGAATCGGAAGACCTCGTGACCAACGCTGGCATCGCATGCGC
CATAGGCTTTGGGCTCTTCATGTTGTCCTTCTCGTACATCTCGTGCTTTC
GTTCGAAGGCTCGTTACGAGCTGCCCAAGCTGCAGGAGTTCATCGTGTGC
TACCGTTGCTTATCTGGGGCGTTCATACTCTTGCTGTTTCCGCTGTTTTG
GGTGGCGGCATCGGAGGTCCGTCCGGTGATCACTCCAATCACGTCGTTCG
GCAATGGATCGTCATGGAACTATGGCTGGGGCCGCCCGGTCCTGCACTTC
GGCTTCGTGTTCGTAGGGATGTTTGTGGACACCCATCAAGCAGCTAGGCT
TTCCTGCTTGGTTGGCATGATGCAGGCCATCGTGTTGGACACGCTTTCCT
CGTACGCTCTGGGCACTCAGATCGATTGTGTCCAGTCAGGGAGATGCGCT
GTGCCGGAACACACAACGTTGTCGGGGTTGCGGCTCCTGCAATCTCGAGA
CCTCACGTCGGTAGCGTTGGCTACGTGGGCGTTGCTCTTAGCCTACTATC
TCAGCCTTGTCATTGGCATGTGCCGAACACGATACAACTTTCGCCAGCTC
CACGCTGGGGACCACAACCGGGTGCTGGTCATGCGGCGAGAGCTTGCGAA
GCGTAGCACGCGGAGAGACGACGACAACATCCTATAG
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