mRNA_Ecto-sp13_S_contig17095.5039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17095.5039.1
Unique NamemRNA_Ecto-sp13_S_contig17095.5039.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17095.5039.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.560e-18
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 LSTRRHDQGVFMYWIPSSVFQMGQTYTMKNNKVRESLGLKPL 126
            L TRRHDQGVFMYWIPSS+FQMGQTYTMKNNKVRE LGLKPL
Sbjct:  237 LFTRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPL 278
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BLAST of mRNA_Ecto-sp13_S_contig17095.5039.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.620e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   22 QGVFMYWIPSSVFQMGQTYTMKNNKVRESLGLKPL 126
            QGVFMYWIPS+VFQMGQTYTMKNNKVRE LGLKPL
Sbjct:  195 QGVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPL 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17095.5039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKU0_9PHAE1.560e-1892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMT8_ECTSI2.620e-1494.29Oxa1-like homolog, mitochondrial inner membrane in... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17095contigEcto-sp13_S_contig17095:3633..3758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.8
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog2880.D7FMT8
Model size126
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
Cds size126
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.512539-CDS-Ecto-sp13_S_contig17095:3632..37581681462894.512539-CDS-Ecto-sp13_S_contig17095:3632..3758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17095 3633..3758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17095.5039.1prot_Ecto-sp13_S_contig17095.5039.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17095 3633..3758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17095.5039.1

>prot_Ecto-sp13_S_contig17095.5039.1 ID=prot_Ecto-sp13_S_contig17095.5039.1|Name=mRNA_Ecto-sp13_S_contig17095.5039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
LSTRRHDQGVFMYWIPSSVFQMGQTYTMKNNKVRESLGLKPL
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mRNA from alignment at Ecto-sp13_S_contig17095:3633..3758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17095.5039.1 ID=mRNA_Ecto-sp13_S_contig17095.5039.1|Name=mRNA_Ecto-sp13_S_contig17095.5039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17095:3633..3758- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCACCCGTCGTCATGATCAGGGCGTGTTCATGTACTGGATACCTTC
TTCAGTATTCCAGATGGGTCAGACGTACACCATGAAGAACAACAAGGTGC
GCGAATCCCTCGGTTTGAAGCCACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17095:3633..3758-

>mRNA_Ecto-sp13_S_contig17095.5039.1 ID=mRNA_Ecto-sp13_S_contig17095.5039.1|Name=mRNA_Ecto-sp13_S_contig17095.5039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17095:3633..3758- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCACCCGTCGTCATGATCAGGGCGTGTTCATGTACTGGATACCTTC
TTCAGTATTCCAGATGGGTCAGACGTACACCATGAAGAACAACAAGGTGC
GCGAATCCCTCGGTTTGAAGCCACTG
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