mRNA_Ecto-sp13_S_contig17003.4995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17003.4995.1
Unique NamemRNA_Ecto-sp13_S_contig17003.4995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17003.4995.1 vs. uniprot
Match: A0A6H5JB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB41_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 1.020e-115
Identity = 167/181 (92.27%), Postives = 171/181 (94.48%), Query Frame = 1 
Query:    1 SIKRSRGAGKRTPRQGESIRWVASTESGHRARSTLLPRAVWVLLFNQGSGAFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKRLGIPRPTRVSMTDLQRFCLDHSFGIWMIPANVVPEAPRKTKKDLGFDPLNLASSPHGRRGARAEAGPVLTPDDIRKWRAKFERLYAQE 543
            SIKRSRGAGKRTPRQGESIRWVASTES HRAR TLLPRAVWVLLF+QGSG+F SSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEK LGIP PTRVSMTDLQRFCLDHSFGI MIPA+VVPEAPRKTKKDLGFDPLNL SSPHGRR A  +AGPVLTPDDIRKWRAKFERLYAQE
Sbjct:   86 SIKRSRGAGKRTPRQGESIRWVASTESEHRARPTLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHSFGIRMIPADVVPEAPRKTKKDLGFDPLNLTSSPHGRRDAGEDAGPVLTPDDIRKWRAKFERLYAQE 266
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BLAST of mRNA_Ecto-sp13_S_contig17003.4995.1 vs. uniprot
Match: D8LLX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX3_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 3.820e-63
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 SIKRSRGAGKRTPRQGESIRWVASTESGHRARSTLLPRAVWVLLFNQGSGAFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKRLGIPRPTRVSMTDLQ 324
            SIKRSRGAGKRTPRQ ESIRWVASTESGHRARSTLLPRAVWVL+FNQGSG+FSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEK LGIPRPTRVSMT  +
Sbjct:   38 SIKRSRGAGKRTPRQDESIRWVASTESGHRARSTLLPRAVWVLIFNQGSGSFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTSFE 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17003.4995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB41_9PHAE1.020e-11592.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX3_ECTSI3.820e-6393.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17003contigEcto-sp13_S_contig17003:2472..3784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score62.0
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog251221.35212229
Model size546
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Alternative locus ID
EggNOG OGs1G70P@1117,COG0457@1,COG0457@2
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-14_002010.1
Cds size546
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.3906896-CDS-Ecto-sp13_S_contig17003:2471..27021681462891.3906896-CDS-Ecto-sp13_S_contig17003:2471..2702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17003 2472..2702 -
1681462891.401603-CDS-Ecto-sp13_S_contig17003:3186..34081681462891.401603-CDS-Ecto-sp13_S_contig17003:3186..3408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17003 3187..3408 -
1681462891.4103851-CDS-Ecto-sp13_S_contig17003:3691..37841681462891.4103851-CDS-Ecto-sp13_S_contig17003:3691..3784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17003 3692..3784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17003.4995.1prot_Ecto-sp13_S_contig17003.4995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17003 2472..3784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17003.4995.1

>prot_Ecto-sp13_S_contig17003.4995.1 ID=prot_Ecto-sp13_S_contig17003.4995.1|Name=mRNA_Ecto-sp13_S_contig17003.4995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
SIKRSRGAGKRTPRQGESIRWVASTESGHRARSTLLPRAVWVLLFNQGSG
AFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKRLGIPRPT
RVSMTDLQRFCLDHSFGIWMIPANVVPEAPRKTKKDLGFDPLNLASSPHG
RRGARAEAGPVLTPDDIRKWRAKFERLYAQE*
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mRNA from alignment at Ecto-sp13_S_contig17003:2472..3784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17003.4995.1 ID=mRNA_Ecto-sp13_S_contig17003.4995.1|Name=mRNA_Ecto-sp13_S_contig17003.4995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17003:2472..3784- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATCAAGAGAAGCAGAGGGGCGGGCAAGAGAACACCCAGACAAGGCGA
AAGCATTCGCTGGGTGGCGTCCACAGAATCGGGACACCGCGCGGTACGTT
CGCGTGTACTTGCATCGTAGTCGATGGAAATTTAGGAATTACCAGCACCG
CCTACTGAGACGCACCAGCGCTCGCCCGCGCGTGCGCGTAGCAACATCTA
ACACAAGCTGTCCGTGTGGGCACGATAACTAACGTACTTTGGATCCGCAG
GAGTCAATACAACAAACGATGATCCGATGATGTGTGTATGTAGTCAACAA
GCCGCTGAGTACGAAAAAATATAACCGACCCTCCCCCCGCCCCATCGAAC
CACCTGCCCCCCCCCTCCCGAATCAGCGCTCCACCCTACTACCACGCGCG
GTTTGGGTCCTCCTTTTCAACCAAGGCTCTGGGGCCTTCAGCAGCAGCAG
CGAGCCACAGCGAGGACTGTATTGCTTGTGGTCCAAGGGCACCAACTCTG
CGTTGGCCTTCGAGGAACGGGAAGGGGCGCTGCGTTACGCCTTCAAGCTG
AAGGAGAAAAGACTAGGAATCCCAAGACCGACGCGGGTCTCAATGACGGT
GGGTAGGCGTATCATGCGGCGCACAAAACACATGTGTGTTTGTTGGCGTG
GGTTACGGATTGATGGGCTTGTTCACTTGTCTAGCTTTTTTGTTTTTGAG
TCGTGCGAAAACGACCATGTGGGGACTGGGGACCGAGTCACGTCGGATGG
AAATCGTCCGCGATTGGCTCTTACGTGTATGCAATACCAGGCAGGAACAT
GGTGAGACGGGGTGGGGGGCAGTGAACAAGTTTTTTTTGTGGTTGATGAC
ACAACAAGTCAAACACACGTTCTCTTCACGTTCACAACAGCAATGACGGA
AAATGCGTTGAAAGCGCACTGAACTGAAGTATCCGTCACTTGTGTCTTAA
CCGTCAATAACCACCCCCTCTTGTTTCTTTTCTCCCGCAGATCAGTTTTT
TCTTGGTGACCCTTTTGGTCCTCTCTCTCTCCCGAACCCATCTCTGCCTC
ACTAATTATTGGCTTGATCCACACCTTGGCAGGACCTCCAACGCTTCTGC
CTGGACCACAGCTTCGGCATCTGGATGATCCCCGCCAACGTCGTGCCCGA
AGCCCCCCGCAAGACTAAGAAGGATCTGGGCTTCGACCCTTTGAACTTGG
CGTCATCACCTCACGGACGACGCGGCGCACGGGCGGAGGCGGGACCCGTG
CTGACGCCGGATGACATCCGTAAGTGGCGGGCTAAATTCGAGCGGCTGTA
CGCTCAGGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17003:2472..3784-

>mRNA_Ecto-sp13_S_contig17003.4995.1 ID=mRNA_Ecto-sp13_S_contig17003.4995.1|Name=mRNA_Ecto-sp13_S_contig17003.4995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17003:2472..3784- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATCAAGAGAAGCAGAGGGGCGGGCAAGAGAACACCCAGACAAGGCGA
AAGCATTCGCTGGGTGGCGTCCACAGAATCGGGACACCGCGCGCGCTCCA
CCCTACTACCACGCGCGGTTTGGGTCCTCCTTTTCAACCAAGGCTCTGGG
GCCTTCAGCAGCAGCAGCGAGCCACAGCGAGGACTGTATTGCTTGTGGTC
CAAGGGCACCAACTCTGCGTTGGCCTTCGAGGAACGGGAAGGGGCGCTGC
GTTACGCCTTCAAGCTGAAGGAGAAAAGACTAGGAATCCCAAGACCGACG
CGGGTCTCAATGACGGACCTCCAACGCTTCTGCCTGGACCACAGCTTCGG
CATCTGGATGATCCCCGCCAACGTCGTGCCCGAAGCCCCCCGCAAGACTA
AGAAGGATCTGGGCTTCGACCCTTTGAACTTGGCGTCATCACCTCACGGA
CGACGCGGCGCACGGGCGGAGGCGGGACCCGTGCTGACGCCGGATGACAT
CCGTAAGTGGCGGGCTAAATTCGAGCGGCTGTACGCTCAGGAATAG
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