mRNA_Ecto-sp13_S_contig16906.4938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16906.4938.1
Unique NamemRNA_Ecto-sp13_S_contig16906.4938.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16906.4938.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.720e-103
Identity = 165/175 (94.29%), Postives = 169/175 (96.57%), Query Frame = 1 
Query:    1 MAQLRLPEAVRPEEVKKVTAQLMKIADEERKAVQAARERAIRRSGLDQGTSAPRPFTTGSGEKTVCMTHLWKWHRREHLQWRPSFTAPSRKELRQLNTRQRERERSGEVSRDWARRVILVVGEKEARLQASERFRGYDPPRFVCPECHEFGCSTADALDEHLGDEPWHAVNAALQ 525
            MAQLRLPEAVRPEEVKKV AQL KIADEERKAVQAARERAIRRSGLDQGTSAPRPFTTGSGEKTVCMTHLW+WHRREHLQWRPSFTAPSRKELRQLN RQR+RER GEVSRDWARRVILVVGE+EARLQA+ERFRG DPPRFVCPECHEFGCST DALDEHLGDEPWHAVNAALQ
Sbjct: 1504 MAQLRLPEAVRPEEVKKVAAQLTKIADEERKAVQAARERAIRRSGLDQGTSAPRPFTTGSGEKTVCMTHLWRWHRREHLQWRPSFTAPSRKELRQLNNRQRKRERWGEVSRDWARRVILVVGEREARLQAAERFRGLDPPRFVCPECHEFGCSTPDALDEHLGDEPWHAVNAALQ 1678
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BLAST of mRNA_Ecto-sp13_S_contig16906.4938.1 vs. uniprot
Match: A0A6H5KGV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV7_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 1.310e-86
Identity = 138/192 (71.88%), Postives = 143/192 (74.48%), Query Frame = 1 
Query:    1 MAQLRLPEAVRPEEVKKVTAQLMKIADEERKAVQAARERAIRRSGLDQGTSAPRPFTTGSGEKTVCMTHLWKWHRREHLQWRPSFTAPSRKELRQLNTRQRERERSGEVSRDWARRVILVVGEKEARLQASERFRGYDPPRFVCPECHEFGCSTADALDEHLGDEPWHAVNAALQVDRVLLHALPLRRTLRH 576
            MAQLRLPEAVRPEEVK V AQL K                                        VCMTHLWKWHRREHLQWRPSFTAPS KELRQLN RQR+RERSGEVSRDWARRVILVVGE+EARLQA+ERFRG+ PPRFVCPECHEFGCSTADALDEHLGDEPWHAVNAALQV R+LLH LPLRRTL H
Sbjct:  195 MAQLRLPEAVRPEEVKNVAAQLTK----------------------------------------VCMTHLWKWHRREHLQWRPSFTAPSHKELRQLNNRQRKRERSGEVSRDWARRVILVVGEREARLQAAERFRGFHPPRFVCPECHEFGCSTADALDEHLGDEPWHAVNAALQVGRILLHTLPLRRTLGH 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16906.4938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQQ9_ECTSI1.720e-10394.29Hypothetical leucine rich repeat calcium binding p... [more]
A0A6H5KGV7_9PHAE1.310e-8671.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16906contigEcto-sp13_S_contig16906:2142..3795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score337.4
Seed ortholog evalue4.3e-90
Seed eggNOG ortholog2880.D8LQQ9
Model size577
KEGG koko:K01273,ko:K16465
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0016805,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759,KOG4308@1,KOG4308@2759
EC3.4.13.19
Cds size576
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00537,ko01000,ko01002,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.0551012-CDS-Ecto-sp13_S_contig16906:2141..22131681462886.0551012-CDS-Ecto-sp13_S_contig16906:2141..2213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16906 2142..2213 +
1681462886.073728-CDS-Ecto-sp13_S_contig16906:2485..26051681462886.073728-CDS-Ecto-sp13_S_contig16906:2485..2605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16906 2486..2605 +
1681462886.0855515-CDS-Ecto-sp13_S_contig16906:2850..29821681462886.0855515-CDS-Ecto-sp13_S_contig16906:2850..2982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16906 2851..2982 +
1681462886.0938032-CDS-Ecto-sp13_S_contig16906:3543..37951681462886.0938032-CDS-Ecto-sp13_S_contig16906:3543..3795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16906 3544..3795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16906.4938.1prot_Ecto-sp13_S_contig16906.4938.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16906 2142..3795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16906.4938.1

>prot_Ecto-sp13_S_contig16906.4938.1 ID=prot_Ecto-sp13_S_contig16906.4938.1|Name=mRNA_Ecto-sp13_S_contig16906.4938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MAQLRLPEAVRPEEVKKVTAQLMKIADEERKAVQAARERAIRRSGLDQGT
SAPRPFTTGSGEKTVCMTHLWKWHRREHLQWRPSFTAPSRKELRQLNTRQ
RERERSGEVSRDWARRVILVVGEKEARLQASERFRGYDPPRFVCPECHEF
GCSTADALDEHLGDEPWHAVNAALQVDRVLLHALPLRRTLRH
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mRNA from alignment at Ecto-sp13_S_contig16906:2142..3795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16906.4938.1 ID=mRNA_Ecto-sp13_S_contig16906.4938.1|Name=mRNA_Ecto-sp13_S_contig16906.4938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16906:2142..3795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGCTGAGGCTCCCCGAGGCGGTCAGGCCGGAGGAGGTGAAAAA
AGTCACCGCCCAGCTAATGAAGGTAACATGGCCATGCATGTTCGTTCCAG
TTTCCTCAATCCGATAAAGACGAACAGGCGAATGCAGCTCATTTCAAGCT
TGCCCTGCAAACGTTGATGCTATTCGGTCGGTTTTGGAACAGCGGCGGGT
ATCTTCGCACTCGTTCTCTTGTACGACACAACAGGACAAGTTAACGGATT
GTGCTCGTTGTCGTATGTAATTACCTTCTTAGAAAGGTTAGAGTTGGTTG
GGGACAGCTAATAGTTCAATCCGTCTTTCGTGTCGAATTCTCAGATTGCT
GACGAAGAAAGAAAAGCGGTCCAGGCGGCACGGGAGAGAGCGATCCGGCG
CTCCGGGTTGGATCAAGGGACGTCCGCGCCTAGGCCGTTCACCACGGGAA
GCGGTGAAAAGACGGTCCGTCAAACTGCATGACTACGGTGGTTACGGTTA
TCGTCGTCATCGTCGTGGTCGTCGTCGCAATATTTGCTGGTGTTGTCCTC
GTTGTTGCCGTTGCTATCGCTACCGTAGAAGATGCTTGCAAAAGTACCTC
TTCCTCTCTCTGTTTAACCAACTACAACATTCATGTTTTGCTGCCAAACG
GGACTCACAGGACGACTGCATAAAAAATCTGTTCCATTGGGCATTTTTCC
TCTCCACAGGTATGCATGACACACCTCTGGAAGTGGCACCGGCGGGAGCA
CTTGCAATGGAGGCCAAGCTTCACGGCGCCGTCTCGCAAGGAACTCCGGC
AGCTCAACACTCGACAGCGGGAGCGGGAACGCTCGGGGGAGGTACACACA
ACACTTGTCGGTCTGCTCATTCTGGTTTTGCACGCATCTTTTCACGTTCG
TTGTCTTCGTGTAGCCCAGATATCTCTATTTGGTGGCGCCCGGTTGGGAC
CCACGACGCGCTGTGTGAGTGGAAATTTTATCACCTGAGGAACCACACAG
GAGACACAGGTTGAAAGACGATCGCACCCAGCCTCAAGAAGCAGAGGATC
GTCCGTTCAGTTCAGCAGTGCTGTGCGCGAGACCTCGGGACATTAGTCAA
CGTCTGCTACAACTCATCCATCTCAAAGAGGGTTGGGGTGGTTTTAAAAT
CTTGTGTTTGATAACGTTATGTAAAGACCACCACGAAGAAGACCAGGACG
CCGATAGAGGTGAAATGAACCCGCTCATGAGGCCTTCATCTACCCATTCA
CGCATCCACAGCACCCCCTAGTCAACGCTCCAGTTGGACATACACCCAAC
CACTCAGCCACCTCAATTACCACCCTACACTAGCCACTAAGGACAGCAGC
GAAGAAACCCAGGCCCTATGTGTCCCCCCTCCCGTCCTGCTGATGTCGAA
AGGTATCTCGAGATTGGGCTCGTCGCGTGATTCTGGTGGTCGGGGAGAAG
GAGGCTCGTCTGCAGGCATCCGAGAGGTTTAGAGGCTACGACCCGCCCCG
CTTCGTCTGCCCCGAGTGTCACGAGTTCGGCTGCTCTACCGCGGACGCGC
TGGACGAGCACCTTGGTGACGAACCGTGGCACGCCGTCAACGCTGCCCTC
CAGGTAGACCGAGTTCTTTTGCACGCCCTTCCTCTTCGGCGCACACTGCG
GCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16906:2142..3795+

>mRNA_Ecto-sp13_S_contig16906.4938.1 ID=mRNA_Ecto-sp13_S_contig16906.4938.1|Name=mRNA_Ecto-sp13_S_contig16906.4938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16906:2142..3795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGCTGAGGCTCCCCGAGGCGGTCAGGCCGGAGGAGGTGAAAAA
AGTCACCGCCCAGCTAATGAAGATTGCTGACGAAGAAAGAAAAGCGGTCC
AGGCGGCACGGGAGAGAGCGATCCGGCGCTCCGGGTTGGATCAAGGGACG
TCCGCGCCTAGGCCGTTCACCACGGGAAGCGGTGAAAAGACGGTATGCAT
GACACACCTCTGGAAGTGGCACCGGCGGGAGCACTTGCAATGGAGGCCAA
GCTTCACGGCGCCGTCTCGCAAGGAACTCCGGCAGCTCAACACTCGACAG
CGGGAGCGGGAACGCTCGGGGGAGGTATCTCGAGATTGGGCTCGTCGCGT
GATTCTGGTGGTCGGGGAGAAGGAGGCTCGTCTGCAGGCATCCGAGAGGT
TTAGAGGCTACGACCCGCCCCGCTTCGTCTGCCCCGAGTGTCACGAGTTC
GGCTGCTCTACCGCGGACGCGCTGGACGAGCACCTTGGTGACGAACCGTG
GCACGCCGTCAACGCTGCCCTCCAGGTAGACCGAGTTCTTTTGCACGCCC
TTCCTCTTCGGCGCACACTGCGGCAT
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