mRNA_Ecto-sp13_S_contig16429.4636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16429.4636.1
Unique NamemRNA_Ecto-sp13_S_contig16429.4636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16429.4636.1 vs. uniprot
Match: A0A6H5L5H5_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H5_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.040e-61
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:    6 MMFVTGARSAWNEDHILSRLPPRLQERILEHVHRDAVLIIPILKTRPPSFVSAILKNLRPRQYSQGEIVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGTEEE 311
            MMFVTGARSAWNEDHILSRLPPRLQER+LEHVHRDAVLIIPILKTRPPSFVSAILKNLRPRQYSQGE+VFQSLHMSQGVYFVTKGIAEAYVRVTGGAG+EEE
Sbjct:    1 MMFVTGARSAWNEDHILSRLPPRLQERVLEHVHRDAVLIIPILKTRPPSFVSAILKNLRPRQYSQGEVVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGSEEE 102
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BLAST of mRNA_Ecto-sp13_S_contig16429.4636.1 vs. uniprot
Match: D7FJ53_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ53_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.690e-59
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 3 
Query:    3 HMMFVTGARSAWNEDHILSRLPPRLQERILEHVHRDAVLIIPILKTRPPSFVSAILKNLRPRQYSQGEIVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGTEEE 311
            HMMFVTGARSAWNEDHILSRLPPRLQER+LEHVHRDAVLIIP+LKTRPPSFVSAILKNLRPRQYSQGE+VFQSLHMSQGVYFVTKGIAEAYVRVTGGAGTEEE
Sbjct:  894 HMMFVTGARSAWNEDHILSRLPPRLQERVLEHVHRDAVLIIPVLKTRPPSFVSAILKNLRPRQYSQGEVVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGTEEE 996
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16429.4636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5H5_9PHAE3.040e-6197.06Cyclic nucleotide-binding domain-containing protei... [more]
D7FJ53_ECTSI1.690e-5997.09Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16429contigEcto-sp13_S_contig16429:460..1249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.1
Seed ortholog evalue3e-50
Seed eggNOG ortholog2880.D7FJ53
Model size313
KEGG koko:K04908,ko:K21867
KEGG TC1.A.1.20.6,1.A.1.4
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG2202@1,KOG0498@1,KOG0498@2759,KOG0501@2759
Cds size306
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.097358-UTR-Ecto-sp13_S_contig16429:459..4641681462864.097358-UTR-Ecto-sp13_S_contig16429:459..464Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16429 460..464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.1077938-CDS-Ecto-sp13_S_contig16429:464..6591681462864.1077938-CDS-Ecto-sp13_S_contig16429:464..659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16429 465..659 +
1681462864.1165848-CDS-Ecto-sp13_S_contig16429:1138..12491681462864.1165848-CDS-Ecto-sp13_S_contig16429:1138..1249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16429 1139..1249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16429.4636.1prot_Ecto-sp13_S_contig16429.4636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16429 465..1249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16429.4636.1

>prot_Ecto-sp13_S_contig16429.4636.1 ID=prot_Ecto-sp13_S_contig16429.4636.1|Name=mRNA_Ecto-sp13_S_contig16429.4636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MMFVTGARSAWNEDHILSRLPPRLQERILEHVHRDAVLIIPILKTRPPSF
VSAILKNLRPRQYSQGEIVFQSLHMSQGVYFVTKGIAEAYVRVTGGAGTE
EE
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mRNA from alignment at Ecto-sp13_S_contig16429:460..1249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16429.4636.1 ID=mRNA_Ecto-sp13_S_contig16429.4636.1|Name=mRNA_Ecto-sp13_S_contig16429.4636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16429:460..1249+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACACATGATGTTCGTGACGGGTGCGAGGAGCGCGTGGAACGAAGACCAC
ATCCTGTCCAGACTACCCCCTCGACTCCAGGAGAGGATCCTAGAGCACGT
CCACAGGGACGCTGTGCTCATCATCCCGATCCTCAAGACGCGACCACCGA
GTTTTGTGTCTGCGATCCTCAAGAATCTTCGGCCGAGACAGTATTCACAG
GTACGTTTTATCTGGAGACAACCCCACCCTCGGCTTCCACGGTGAACAAC
GAACGCTGGATGAATGTTGTTTGTTTCGATTATAATCTTCTTGCTGCCTT
TGCGCACCCACGGTATGCATGTATCCTGTTACATGGTGATGTCTACATTA
CTTAATCGTCCACAGTGTTTCTCGACCTCGGCGCTGATGGCTGCGATCGA
CAACGGTTTCCTCTTCGGTCGGTGACAAGCCATGACTTCTTGATCAAACG
GTCCTGAGTAGTGGTGGCTCTTCTTTCGTGGCCGTCTTTTGCGTGACTAG
AAGAGACCGGAATCCTGTTTTTTTCCTTTCGCACGAGAGAACAAACCAGA
GAAAGGCGATCGATATCCATCATAACTTCCTCCGGGGTGCAGACATGATG
GCGGTGAATACACTGGAGCTCTCCCTCGCCCACCCTCTCTTATCACGTCG
GAAACTCATGTTTCCGTGTCTGTACGCAGGGAGAAATAGTCTTCCAAAGC
CTACACATGAGTCAGGGGGTGTACTTCGTCACTAAGGGGATCGCCGAGGC
ATACGTTAGAGTTACGGGCGGCGCTGGGACGGAGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16429:460..1249+

>mRNA_Ecto-sp13_S_contig16429.4636.1 ID=mRNA_Ecto-sp13_S_contig16429.4636.1|Name=mRNA_Ecto-sp13_S_contig16429.4636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16429:460..1249+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTCGTGACGGGTGCGAGGAGCGCGTGGAACGAAGACCACATCCT
GTCCAGACTACCCCCTCGACTCCAGGAGAGGATCCTAGAGCACGTCCACA
GGGACGCTGTGCTCATCATCCCGATCCTCAAGACGCGACCACCGAGTTTT
GTGTCTGCGATCCTCAAGAATCTTCGGCCGAGACAGTATTCACAGGGAGA
AATAGTCTTCCAAAGCCTACACATGAGTCAGGGGGTGTACTTCGTCACTA
AGGGGATCGCCGAGGCATACGTTAGAGTTACGGGCGGCGCTGGGACGGAG
GAGGAG
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