mRNA_Ecto-sp13_S_contig1591.4338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6H5K0T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T1_9PHAE) HSP 1 Score: 163 bits (413), Expect = 5.630e-45 Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGHDIVIL 252
VNTVVLAVDH DAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSG DIVIL
Sbjct: 1368 VNTVVLAVDHVDAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSG-DIVIL 1450
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: D7FSJ3_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ3_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.110e-20 Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1
Query: 115 MLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGHDIVIL 252
ML+GLGFRCYFSTGRQIFEFVVTMASLIDLVM+LSGACSGHDIV+L
Sbjct: 1 MLFGLGFRCYFSTGRQIFEFVVTMASLIDLVMNLSGACSGHDIVVL 46
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6P7ZLK4_9AMPH (Voltage-dependent L-type calcium channel subunit alpha n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7ZLK4_9AMPH) HSP 1 Score: 62.0 bits (149), Expect = 2.640e-9 Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSG 222
+NTV +A +H + PDW +AQD N ++F E L +Y LGF+ YF + F+ V + L+++V+ L+G
Sbjct: 445 LNTVTIATEHHNQPDWVTSAQDTANQVLLALFTAEMALKMYALGFQAYFMSLFNRFDCFVVCSGLLEIVLVLTG 518
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: UPI001CF31C8F (voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF31C8F) HSP 1 Score: 62.0 bits (149), Expect = 2.640e-9 Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMD 213
+NT+VLAV++ + PDW Q F +IF VE L LYGLG YFS+ IF+F V +ID++++
Sbjct: 491 LNTIVLAVEYHNQPDWLTEFQYNAEIVFLTIFFVEMLLKLYGLGIHQYFSSSFNIFDFAVVCCGIIDMLIE 561
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A7S1LCP1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LCP1_NEODS) HSP 1 Score: 60.1 bits (144), Expect = 1.240e-8 Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDL 204
+NTVVLA H + PDW + N F IFV E +++ G+GFR +F++G + +F+V +AS+++L
Sbjct: 516 LNTVVLAAQHHEQPDWMTEWTERANLGFLGIFVFEVVVVMTGVGFRRFFTSGFFVLDFLVVVASIVEL 583
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A6P9BSF4_PANGU (Voltage-dependent L-type calcium channel subunit alpha n=15 Tax=Serpentes TaxID=8570 RepID=A0A6P9BSF4_PANGU) HSP 1 Score: 60.1 bits (144), Expect = 1.260e-8 Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVM 210
+NT+ +A +H D PDW AQD+ N S+F VE L +Y LG R YF + F+ +V +++L++
Sbjct: 446 LNTISIATEHHDQPDWLTHAQDVANRVLLSLFAVEMILKMYALGLRQYFMSLFNRFDCLVVCTGILELIL 515
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: X6N3J9_RETFI (Voltage-dependent T-type calcium channel subunit alpha-1H n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N3J9_RETFI) HSP 1 Score: 58.9 bits (141), Expect = 3.020e-8 Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLVMDLSGACSGH 237
+NTVVLA+ D T ++FN F IFV+E LML GLG R ++S IF+ ++ M SL+DL++ + S H
Sbjct: 214 LNTVVLALVWPHMNDTAKTVLEVFNSIFTVIFVIELVLMLIGLGPRLWWSDHSNIFDGIIVMVSLVDLIV---SSASNH 289
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A267GKN3_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GKN3_9PLAT) HSP 1 Score: 58.9 bits (141), Expect = 3.180e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
+NTV +A+D + P W T F +F+ E C+ +YGLGFR YF + IF+ V +ASL +++
Sbjct: 499 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 567
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A267DH19_9PLAT (EF-hand domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DH19_9PLAT) HSP 1 Score: 58.9 bits (141), Expect = 3.200e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
+NTV +A+D + P W T F +F+ E C+ +YGLGFR YF + IF+ V +ASL +++
Sbjct: 50 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 118
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Match: A0A1I8H725_9PLAT (EF-hand domain-containing protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8H725_9PLAT) HSP 1 Score: 58.9 bits (141), Expect = 3.210e-8 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 1 VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSTGRQIFEFVVTMASLIDLV 207
+NTV +A+D + P W T F +F+ E C+ +YGLGFR YF + IF+ V +ASL +++
Sbjct: 802 LNTVCVAIDFNNQPQWLTTFLYYAEFVFLGLFMFEMCIKMYGLGFRLYFQSSFNIFDCTVIVASLFEVI 870 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1591.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1591.4338.1 >prot_Ecto-sp13_S_contig1591.4338.1 ID=prot_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp VNTVVLAVDHADAPDWQLTAQDIFNHTFASIFVVETCLMLYGLGFRCYFSback to top mRNA from alignment at Ecto-sp13_S_contig1591:382..1503+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1591.4338.1 ID=mRNA_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:382..1503+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1591:382..1503+ >mRNA_Ecto-sp13_S_contig1591.4338.1 ID=mRNA_Ecto-sp13_S_contig1591.4338.1|Name=mRNA_Ecto-sp13_S_contig1591.4338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:382..1503+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |