mRNA_Ecto-sp13_S_contig15791.4265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI) HSP 1 Score: 354 bits (908), Expect = 1.640e-114 Identity = 188/201 (93.53%), Postives = 191/201 (95.02%), Query Frame = 1
Query: 1 RVILDEGGQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSERSARLGVHETLKKPEQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSASGTAPPSPEGAEDHPSREKVFRKPEDVEEGEESKDGETHAGEEAGEQRPAAAEATGGMTNIKDL 603
RVILDEGGQ GGSKVNFQKASCTLDASVKIYSHRVDATH+SSYSLLDNLNRSDNDNADKG GAAVGSSERS RLGVHETLKKPEQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSA+ TAPPSPEGAED P REKVFRKPEDVE+GEESKDGET GEEAGEQ PAAAEA GGMTNIKDL
Sbjct: 30 RVILDEGGQMGGSKVNFQKASCTLDASVKIYSHRVDATHISSYSLLDNLNRSDNDNADKGAGAAVGSSERSTRLGVHETLKKPEQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSPEGAEDQPRREKVFRKPEDVEDGEESKDGETPTGEEAGEQHPAAAEAAGGMTNIKDL 230
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE) HSP 1 Score: 320 bits (820), Expect = 6.810e-107 Identity = 179/225 (79.56%), Postives = 186/225 (82.67%), Query Frame = 1
Query: 1 RVILDEGGQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSERSARLGVHETLKKPEQLDQS------------------------ETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSASGTAPPSPEGAEDHPSREKVFRKPEDVEEGEESKDGETHAGEEAGEQRPAAAEATGGMTNIKDL 603
RVILDEGGQ GGSKVNFQKASCTLDASVKIYSHRVDATH+SSYSLLDNLNRSDNDNADKG GAAVGSSERSARLGVHETLKKPEQLDQ E DRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSA+ TAPPSPEGA D R+KVFRKPE V++GE+SKDGET A EEAG+Q PAAAEA GMTNIKDL
Sbjct: 30 RVILDEGGQMGGSKVNFQKASCTLDASVKIYSHRVDATHISSYSLLDNLNRSDNDNADKGAGAAVGSSERSARLGVHETLKKPEQLDQRHVSTDLLLLHRSLFSFYFLFTVVFEADRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSPEGAVDRSRRDKVFRKPEGVDDGEDSKDGETPAEEEAGKQHPAAAEAAEGMTNIKDL 254
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A6T7G3N6_9STRA (Condensin complex subunit 2 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7G3N6_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.460e-29 Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 1
Query: 40 KVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKG-------------TGAAVGSSERSARLGVHETLKK-PEQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSD-GCKVSFDSE 402
+VNF KASCTLDASVKIYS+RVD H++SY +L NLNR+DN N G T + VG ++S R G ETL+ P L+ S+ D A+ +DP+FHKMSK FDE G+KG+LL NL VSD GC + FDS+
Sbjct: 199 RVNFTKASCTLDASVKIYSYRVDDVHLTSYKVLANLNRTDNGNKKGGKNSDDGDEESSNHTASEVGERKQSERRGTTETLESNPSNLNMSKLDSAYDIDPLFHKMSKTFDEGGAKGLLLVNLGVSDHGCGIVFDSK 334
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: K0R4E2_THAOC (Condensin complex subunit 2 (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4E2_THAOC) HSP 1 Score: 114 bits (284), Expect = 9.890e-26 Identity = 72/148 (48.65%), Postives = 92/148 (62.16%), Query Frame = 1
Query: 22 GQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSE-------------RSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVS-DGCKVSFDSESSASGT 420
G+TG +VNF KASCTLDASVKIYS+RVD H+SSY +L NLNRSD + G G +E R R G ET++ ++ S+ D A+ +DP+FHKMSK FDE G+KG+LL NL VS GC V FDS+ + + T
Sbjct: 42 GRTG--RVNFAKASCTLDASVKIYSYRVDDVHLSSYRVLANLNRSDTNKGRAGGDHEDGGAEDGEXXXXXRKSMRRQRRAGPTETIESNLANINMSKLDSAYDIDPLFHKMSKSFDEGGAKGLLLGNLGVSTSGCHVVFDSKEATADT 187
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A7S4HYK3_9STRA (Condensin complex subunit 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYK3_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.230e-24 Identity = 69/138 (50.00%), Postives = 90/138 (65.22%), Query Frame = 1
Query: 31 GGSK--VNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDND---NADKGTGAAV-------GSSERSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVS-DGCKVSFDSE 402
G SK VNF KASCTLDASVKIY +RVD H++SY +L NLNR+DN N+ K V G + S R G +TL+ ++ S+ + A +DP+F KMSK FDE G+KG+LLNNLSV+ DGC++ FDS+
Sbjct: 236 GSSKKRVNFTKASCTLDASVKIYGYRVDDVHLTSYKVLANLNRTDNGSKKNSHKDASGDVHDGSDPSGGKKTSVRAGPTDTLESNLAAINMSKLEAAPDIDPLFRKMSKAFDEGGAKGLLLNNLSVANDGCRIEFDSK 373
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A329ST35_9STRA (Condensin complex subunit 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329ST35_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.040e-23 Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1
Query: 1 RVILDEGGQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNA--DKGTGAAVGSSERSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDS 399
R+ D G G NFQKASCTLDAS+KIYS+RVD T SSY +L+NL+R++ + D G S+ R R T++K ++ D + DP+FHKMS+ FDE G+KGMLL NLSV DGCK+ +S
Sbjct: 139 RIAAD--GDAGDDTYNFQKASCTLDASIKIYSYRVDDTWNSSYKILENLSRTEQKHGVDDAGEDGGAASTSRKTRKTHARTIEKNLNNINLKAYDTECEADPLFHKMSQSFDEGGAKGMLLANLSVYDGCKILLNS 272
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A485LHY8_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHY8_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.890e-23 Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 46 NFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSERSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDS 399
NFQKASCTLDASVKIYS+RVD T SS+ +L+NL R D N D G S +L V T++ + ++ D F++DP+F KMS+ FDE G+KGML+ NLSV +GCK+ DS
Sbjct: 231 NFQKASCTLDASVKIYSYRVDDTWNSSFKVLENLTRGDEVNHDDDEGEGAERRTTSKKLTVANTIETNLKNINMKSVDLEFQVDPLFQKMSQAFDEGGAKGMLMVNLSVHNGCKIVLDS 349
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: B8BWW0_THAPS (Condensin complex subunit 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWW0_THAPS) HSP 1 Score: 106 bits (264), Expect = 4.860e-23 Identity = 70/139 (50.36%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 40 KVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAV-------------GSSER---SARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSD-GCKVSFDSE 402
+VNF KASCTLDASVKIYS+RVD H+SSY +L NLNRSDN KG GSS R R G ET++ ++ S+ D A+ +DP+FHKMSK FDE G+KG+LL NL VS GC + FDS+
Sbjct: 224 RVNFTKASCTLDASVKIYSYRVDDVHLSSYRVLANLNRSDN--GKKGGEEXXXXXXXXXXXXXKNGSSVRRRNGERKGNMETIESNLANINMSKLDSAYDIDPLFHKMSKSFDEGGAKGLLLGNLGVSSKGCHIVFDSK 360
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A484DXY5_BRELC (Condensin complex subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY5_BRELC) HSP 1 Score: 105 bits (263), Expect = 6.570e-23 Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 1 RVILDEGGQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSERSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDS 399
RV+ D GG NFQ+ASCTLDASVKIYS+RVD T SSY +L+NL+R++ + + R R + T++K ++ D + DP+FHKMS+ FDE G+KGMLL NLSV DGCK+ +S
Sbjct: 143 RVVAD-GGDADDDTYNFQRASCTLDASVKIYSYRVDDTWNSSYKILENLSRTEQKHGHDELSEHPSHTVRKTRKALARTIEKNLNNINLKVYDTECQADPLFHKMSQSFDEGGAKGMLLANLSVYDGCKILLNS 275
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Match: A0A6G0XUU4_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUU4_9STRA) HSP 1 Score: 105 bits (262), Expect = 8.760e-23 Identity = 60/119 (50.42%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 46 NFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNRSDNDNADKGTGAAVGSSERSARLGVHETLKKP-EQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDS 399
NFQKASCTLDASVKIYS+RVD T SS+ +L+NL R D D G A S L V T++ + ++ D F++DP+F KMS+ FDE G+KGML+ NLSV +GCK+ DS
Sbjct: 225 NFQKASCTLDASVKIYSYRVDDTWNSSFKVLENLTRGDEVRHDDGDEEATEKRTTSXXLTVANTIETNLKNINMKSVDLEFQVDPLFQKMSQAFDEGGAKGMLMVNLSVHNGCKIVLDS 343 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15791.4265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15791.4265.1 >prot_Ecto-sp13_S_contig15791.4265.1 ID=prot_Ecto-sp13_S_contig15791.4265.1|Name=mRNA_Ecto-sp13_S_contig15791.4265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp RVILDEGGQTGGSKVNFQKASCTLDASVKIYSHRVDATHMSSYSLLDNLNback to top mRNA from alignment at Ecto-sp13_S_contig15791:99..3768- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15791.4265.1 ID=mRNA_Ecto-sp13_S_contig15791.4265.1|Name=mRNA_Ecto-sp13_S_contig15791.4265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15791:99..3768- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15791:99..3768- >mRNA_Ecto-sp13_S_contig15791.4265.1 ID=mRNA_Ecto-sp13_S_contig15791.4265.1|Name=mRNA_Ecto-sp13_S_contig15791.4265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15791:99..3768- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |