mRNA_Ecto-sp13_S_contig15121.3866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15121.3866.1
Unique NamemRNA_Ecto-sp13_S_contig15121.3866.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15121.3866.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 8.850e-9
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:  173 ELVNEGFPLHDDHVPFLLENIGDHEH 250
            ELVNEGFPLHDDH+PFLLENIGDHEH
Sbjct:  757 ELVNEGFPLHDDHMPFLLENIGDHEH 782
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15121.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHA0_ECTSI8.850e-996.15Transient Receptor Potential Channel. Partial sequ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15121contigEcto-sp13_S_contig15121:1940..3171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size253
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.014166-UTR-Ecto-sp13_S_contig15121:1939..19831681462805.014166-UTR-Ecto-sp13_S_contig15121:1939..1983Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15121 1940..1983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.0227556-CDS-Ecto-sp13_S_contig15121:1983..20191681462805.0227556-CDS-Ecto-sp13_S_contig15121:1983..2019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15121 1984..2019 -
1681462805.0327656-CDS-Ecto-sp13_S_contig15121:2280..23741681462805.0327656-CDS-Ecto-sp13_S_contig15121:2280..2374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15121 2281..2374 -
1681462805.0408812-CDS-Ecto-sp13_S_contig15121:3094..31711681462805.0408812-CDS-Ecto-sp13_S_contig15121:3094..3171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15121 3095..3171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15121.3866.1prot_Ecto-sp13_S_contig15121.3866.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15121 1984..3171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15121.3866.1

>prot_Ecto-sp13_S_contig15121.3866.1 ID=prot_Ecto-sp13_S_contig15121.3866.1|Name=mRNA_Ecto-sp13_S_contig15121.3866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
WRDDFKHYSRRGAKVAAKRGDFTALRSRVRANLKRERSLKGYSNFNEPPI
QQAVYLNGVGERGFSSAR*
back to top

mRNA from alignment at Ecto-sp13_S_contig15121:1940..3171-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15121.3866.1 ID=mRNA_Ecto-sp13_S_contig15121.3866.1|Name=mRNA_Ecto-sp13_S_contig15121.3866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1232bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15121:1940..3171- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAGGGATGATTTCAAGCACTATTCCCGACGAGGAGCCAAGGTCGCGGC
GAAGCGGGGCGACTTCACAGCTCTCAGGTACGTGCAACGTGACCTCCCTC
AGATCCGTATTGTACCGTGCACGAAGAGCAACACCGGCAGCTGATGCACA
GCAGCCATCAGCGTTCACCTATTATACGATACATAGTTTTGGCCCCTCGC
CCCCCAATGGGGCGGGCGGCCATAGCCAGACGGATGGCGGTGAGGGTTTG
GGAGTAAGTGAAGTAAGGAAGAAGAAGGGAGACGACGAACTCTATTAGCC
GAATAGGTGACAACCAAGGATAAAATGTCTATTAGAGTATTGTTTACATG
TATGTAGACGTAACAAGAACAAGCCGAGCAGTTGTCCGGACAACTGGCAA
CTGTTTGTTGTTCCAAGAAAGACCGTAGCCCCATTTAAAACAGAATTCAA
GTTCGTCAAGGTCCACCGGACTTCGATCCTCCGGATGGTAGAAAAGGCCT
GAGCAGCACCAGGAAACATTGGTGCCCAGCGGTATGCATGAAGGAGGACG
AAGCCACTATGTTAAACTACTGATGGACAACTATATGTACTGTACGTAAA
TAGCTGTGTAGCTCTGGATACGTACCTCAGAAGCAGCCACACTCGCGCCC
AATGTCATCGTGGAAGGTTGTAAACGAATGTACGATTGCTTGCGTTTCTA
CGAAGAGGACAAGCGAAACGCGTAAGTCAGTAACATTCCGGATGGTTCCC
TGGAGCGCCAGCAATGGTCTTTAATCAAACGGCCCCCCCGACCTTAGGAG
CCGGGTGCGGGCGAACCTGAAACGGGAACGCTCTCTCAAGGGATATTCCA
ACTTCAACGAGCCCCCGATCCAGCAAGCTGTTTACCTCAACGTGCGTTTT
GGCTGCTTCTTTGATGACACACGTATCTCCACGTCGTGCGGGCGAGAGTA
CGTTGCACAAAATGCTTGCCGGGAGGGTTACGACAGTAGTCAACGTTGTC
CCGGAGGAAAACAAAAATGGCGAAACTCGAGACACAGATGTTGATAACGT
TGGTGGCAGGTTGACAGAAGATTACCCTTCATGACTGGTGTTGTGTGCAA
GGCTGCCATACACGAACGACGACTTGCAACACCCGTGACGGTTTTCATAC
AGGGAGTTGGTGAACGAGGGTTTTCCTCTGCACGATGATCACGTGCCTTT
TTTGCTGGAAAATATCGGAGACCATGAGCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15121:1940..3171-

>mRNA_Ecto-sp13_S_contig15121.3866.1 ID=mRNA_Ecto-sp13_S_contig15121.3866.1|Name=mRNA_Ecto-sp13_S_contig15121.3866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15121:1940..3171- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAGGGATGATTTCAAGCACTATTCCCGACGAGGAGCCAAGGTCGCGGC
GAAGCGGGGCGACTTCACAGCTCTCAGGAGCCGGGTGCGGGCGAACCTGA
AACGGGAACGCTCTCTCAAGGGATATTCCAACTTCAACGAGCCCCCGATC
CAGCAAGCTGTTTACCTCAACGGAGTTGGTGAACGAGGGTTTTCCTCTGC
ACGATGA
back to top