mRNA_Ecto-sp13_S_contig1511.3860.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1511.3860.1
Unique NamemRNA_Ecto-sp13_S_contig1511.3860.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1511.3860.1 vs. uniprot
Match: D7FJA4_ECTSI (Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA4_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.450e-101
Identity = 159/174 (91.38%), Postives = 165/174 (94.83%), Query Frame = 3 
Query:  375 MQLASSVVTRAARLAPRRVIPSTPKPAPKIPGTLPCTCNPSTALWHHDSGETSSIKTVRDETELAQLLAATRPSSLVVVKFGEARCKASKVVEEKFKQTAAEFAECDKTDVQFASVDSGSNWLLCQKMGIRSVPHVQIFSGFNGKIADFSLAPPEYDTLDALLGERRDSMLAWK 896
            MQLASSV TRAARLAPR VIPSTPKPAPKIPG LP   NPSTALWHHDSGETSSI+TVRDETELAQLL ATRPSSLVVVKFG+A CKASK VEEKFKQTAAEF+ECDKTDVQFASVDSGSNWLLC+KMG+RSVPHVQIFSG+NGKIADFSLAPPEYDTLDALLGERRDSMLAWK
Sbjct:    1 MQLASSVATRAARLAPRSVIPSTPKPAPKIPGHLPGAYNPSTALWHHDSGETSSIQTVRDETELAQLLDATRPSSLVVVKFGKALCKASKAVEEKFKQTAAEFSECDKTDVQFASVDSGSNWLLCKKMGVRSVPHVQIFSGYNGKIADFSLAPPEYDTLDALLGERRDSMLAWK 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1511.3860.1 vs. uniprot
Match: D7G5S5_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.620e-31
Identity = 89/206 (43.20%), Postives = 112/206 (54.37%), Query Frame = 3 
Query:  336 AITTLSRAE*RVSMQLASSVVTRAARLAPRRVIPSTPKPAPKIPGTLPCTCNPSTALWHHDSGETSSI---------------------KTVRDETELAQLLAATRPSSLVVVKFGEARCKASKVVEEKFKQTAAEFAECDKTDVQFASVDSGSNWLLCQKMGIRSVPHVQIFSGFNGKIADFSLAPPEYDTLDALLGERRDSMLA 890
            A T   RA  R S Q   +V   AA+L    +  S   P   +   LP     +T LWH+D    +                       KTV++E EL +LLA+     LVVVKF    C AS+ VE +F+QTAAEF + D   V FA V   SN  LC++MGI+SVPHVQIFSG  GKIADFS+AP +Y+TL +LL ERRDS+ A
Sbjct:    3 ASTIAGRAAVRASRQGQRTV---AAKLTSGAI--SAASPCSNVRSPLPGAYRETTELWHNDKAADAPTDVVEWVWDNRQFRPNPAPPAPKTVKNEAELTKLLAS---DGLVVVKFHAILCDASRAVEGRFRQTAAEFGDMDNKQVTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAA 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1511.3860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJA4_ECTSI1.450e-10191.38Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpu... [more]
D7G5S5_ECTSI4.620e-3143.20Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1511contigEcto-sp13_S_contig1511:4901..8586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score132.1
Seed ortholog evalue2.5e-28
Seed eggNOG ortholog2880.D7G5S5
Model size1701
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.Thioredoxin
EggNOG OGs2D09X@1,2SDCR@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-12_008280.1
Cds size528
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.5291755-UTR-Ecto-sp13_S_contig1511:4900..56991681462804.5291755-UTR-Ecto-sp13_S_contig1511:4900..5699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1511 4901..5699 -
1681462804.5729322-UTR-Ecto-sp13_S_contig1511:8212..85861681462804.5729322-UTR-Ecto-sp13_S_contig1511:8212..8586Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1511 8213..8586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.5426722-CDS-Ecto-sp13_S_contig1511:5699..58161681462804.5426722-CDS-Ecto-sp13_S_contig1511:5699..5816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 5700..5816 -
1681462804.5533452-CDS-Ecto-sp13_S_contig1511:6347..65901681462804.5533452-CDS-Ecto-sp13_S_contig1511:6347..6590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 6348..6590 -
1681462804.563187-CDS-Ecto-sp13_S_contig1511:8044..82121681462804.563187-CDS-Ecto-sp13_S_contig1511:8044..8212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1511 8045..8212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1511.3860.1prot_Ecto-sp13_S_contig1511.3860.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1511 5700..8212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1511.3860.1

>prot_Ecto-sp13_S_contig1511.3860.1 ID=prot_Ecto-sp13_S_contig1511.3860.1|Name=mRNA_Ecto-sp13_S_contig1511.3860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MQLASSVVTRAARLAPRRVIPSTPKPAPKIPGTLPCTCNPSTALWHHDSG
ETSSIKTVRDETELAQLLAATRPSSLVVVKFGEARCKASKVVEEKFKQTA
AEFAECDKTDVQFASVDSGSNWLLCQKMGIRSVPHVQIFSGFNGKIADFS
LAPPEYDTLDALLGERRDSMLAWKR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1511:4901..8586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1511.3860.1 ID=mRNA_Ecto-sp13_S_contig1511.3860.1|Name=mRNA_Ecto-sp13_S_contig1511.3860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3686bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1511:4901..8586- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCATTTCTGGGTAGCGGGTACACATGCAACAGCACCAGAGGGGGACAC
ACCTTTTACGCTCCAGTAGACGGGTCGAGGTGAGCTCTGTTGTGTGTAGG
TCGTCGTTGATCCTCCGTACATAGGAAACGAACTCTACGGTACTCGGCAC
ACCATCAGCCTGTCGTGTGACGATCAAGCGTGTGGCCCTGGTTGATTTTC
TCCGTGCGCACGATGAACCATATCGAATTTCTTGAACGACTCCTCTGCAG
TAGTGTCACCTATTCTTCAACAACTCCTCTGCAACCGTACCGCCTCAATG
CGTCTTTTATTCAGGAGAGAGGCAAGGGCAAAGGAGCAATCACCACGCTG
TCTCGTGCCGAGTGAAGAGTGAGCATGCAGCTTGCTTCCTCAGTCGTTAC
TCGGGCCGCGAGGCTGGCTCCTCGAAGAGTGATCCCGTCGACCCCGAAAC
CTGCCCCAAAGATTCCCGGAACTCTACCTTGCACGTGCAACCCATCGACC
GCTCTCTGGCATCATGACTCGGGGGAAACTTCATCGATCAAGGTGAGGTC
AGTGTATGTGACAGCATTCATCATACGCATTGGTTCACACCACCCTACAG
TTGGGGAGTCTCAGGGCCAATATGTGACCGAATCGGGTAAATAAAGAAGG
GATTTTCGTCTCTTCGATGCATACAGTTGGCCGCATTCATACATTGTACA
TGCATTCTGTTCCCGCAACAATCTTGAGGGGGCTGAATCGCGCGTACATG
TAAAGTATTGTCGTCATATGGCCGAGATTTGGGTTCGAGTTGTAGTTTTC
AGTCCTCCATCTTGTACATACACGCTCTCTTGTCTCCTATTCACGTCGGG
CTGAGCCGCGCAAAAAAAACGTGTTAAGACAGAAGACAACGCTTCTTGGT
ATCTTCTGTATGCATACAAACCTCGACGGGCGCTGCATGGGTTTCGCAAA
CAGTAGCAGATCCCATTCCATCCGCACCTAAAACCATGCGTTTTTTAGCG
CGGGCAGCATGAGGAGATATATATAACACTGCTGTGAAGACTATGATACT
GCCCAGGGGGTAAGTAGAGCACAGGTAGGAAATATGTTTCGCTTCTGTTA
GAAAACAGAAGATGGTCTTCTTACTCGACTGACTTTCTCTGGCATTCATT
TTTTTTCCCGCCTCTGGAACTGTCTATCTAGTTGAGGATAGGAATTTACG
AGGATAGTTCCTGCTGGCGATTTATACGTGTTCAGTGTAACATCGGTGCA
CACAAACACGAACTATAGACACGGGCACACACGCGACACACCGTAAGGAG
GAGTCCTTCATTGTTGTGTGGGGCTCGCATGAATAGGGGCGTGGGTTCGC
GTTAACACAGGGTGACCGCCAGAGGCATGGCAAAGGAATAGAGTAGCAGC
TAACTGCCCTGACAGCAATCAATAGCAATAGCACAGAGGATAGATCCAGC
GTAGCAGTTGGTACCTGTTGACTCTGCCTCACCACTTGTACGGGGGATAC
GGCAAGCTCGTACTAGAAGGAGTGCCGGAGGTGAAACCGTTCGAGGGAAA
GTGCCTCACACGCGCGACGGCTGGAGCGATGCCAGGTAACGACTTTTACA
GAATCCGCTACGTATCGTCCGTGATGCACGCGGAGAAAATGCCGATCACG
ACAGTGCTCAGAAGACCCAGGGTTACAGAGCACAGAGCCCGTCACTGAAG
GTCTTGGCAATCGTGTGCACCCCTTCCTACTAGAGAGAACGGTTGTGCAC
GGTGAAACGACCCCTCTAATGTCCTCTTGCTGTGAACAACACCCATTTTT
CAGAGTTCACAGAGTCAGTAAAGATGGCAGTTTTACTCGACAACCTTGGC
GAAGAGGACGTCTCGCTGGTCGTCACGCACACTTGGGTCGCGAGCAGCCC
TTGCGCAATTTTGTTTCGTGTAGGCTTTATCTTTTCGCTGCCTCACCTTT
TCCGGACCCTCCCATCCCGATACCCACGCACTATCGCCTCTCGAAGACCG
TGAGAGACGAGACGGAACTGGCCCAGCTGTTGGCCGCTACCCGGCCCAGC
TCTCTCGTAGTCGTCAAGTTCGGCGAAGCTCGCTGCAAAGCTTCCAAGGT
GGTCGAGGAAAAGTTCAAGCAAACAGCGGCTGAGTTTGCCGAATGCGATA
AAACGGACGTGCAATTCGCCAGCGTCGATTCGGGCAGCAATTGGCTTCTG
TGCCAGAAAATGGGTATCAGATCGGTACCCCACGTGCAGGTGTGCTTTAG
AACGGATCGCGACTGCATGTAGGGGAAGTGGCATCAGCACGCTGGCATGC
CTTCGGTCCGGCGTGACAAGCCAGGGTTTCATGCATAGCATATTTGAGTA
GACAACAAGTAATGACCTGTGTATACCACCGTTGTCTTCGGAACCAGGTG
AACTATTGTAGCAAGATGCTTGACGCTTTATATCAAAGGCAGATGACATG
CCCCGCCAAAGCGTCGTTTCTGGATAGCCCGCAAAAAAACGTGCGTGGTT
GGTCGGCCGGGTGTTTGGTACCCAAGAACCGAACGCGGGTCTACGCACGT
TGCACCAGAGCCGGTTAAGGCGGGTCCAAACAGAAAAAAAGGAACTTACA
CGAACCTCTCTTGACATGACGTATAGGGCAGAAAGGTGAAGCTCAAATCC
CCACTGTTGCACGTAAGTTTTAACCGGCCCATTCCCGAAAAGTTCTCGAG
TTGATAGTCTCTCCTCCGCCGCGTTGGCTGGACCTGTCCGTTCGCGCTTT
CCTCGACCCGTTTCGCTCAGATATTTTCCGGCTTCAATGGCAAGATTGCT
GACTTCAGCCTTGCTCCTCCCGAATACGATACCCTCGATGCTCTGCTGGG
CGAACGACGCGACTCGATGCTCGCTTGGAAACGGTAGGAAACTCAGGCAT
GACAAGCAACAAAATATGCACGTGCTCTGCGGTCAGAGCGCGTTCCCGCT
CCCAATACTTGACGTTCGCCAGACTCGTTAGATAGATAGTTGTTGGCGAG
CGTGAATCTTACACGTTGGGGGGGGGGCATGAAGGGACAAGCCGCATGGG
CACTACTATGACTGGCCTATCCGCCTGACTTGCTTGTGATAGTTCGAGGG
TACATAGTGTCCTGAACATTGCAGGAGATAATTGCGGACTGTGACTGGCC
GAGCGGAAACAACGGGTCATCGTTGAAGTTTCGTTTTTAGGGGACCTACG
TTCCTGCTGCTTGTAGTGTAGTCACCATGTTAATCGCCGTTAGCCCGCCT
GCTTGTCGTGTATGTTTTTCGACCTTGACACTGTCCACGAATTACTATAG
ATTTCGGAGACACCGTTTGCTTGTTGCTGGGGTCGATAGTTGCTGGCGGT
AGCCTTACGAAGTTTTTTTGTCAGCAGATATATTGGATGAAGCATGAGAT
CAGTCGGATTTCGGGGAACGGTTGGAGAAAGGGACAACGTTCGAGTCTCC
GTATCCCCTGCCTCTCTAGTGCATAGATGAACTTTATTTCTTCGCGTGTA
GTCAGTTGCAGGTCATTCGGGAACACATGTTGTCCTGCCGGCGTACGTTT
GCACGCGCTCGGCAACACGCTTTGATATTCACTAATAATGCCTTCATCTT
TTGGTGTGTTTGAACTTATGATGGATGTCTACTACTTAGGCCATTAGGCG
GCAGTGACAGCTCGGTGGTGAAGTCATGCTCCTCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1511:4901..8586-

>mRNA_Ecto-sp13_S_contig1511.3860.1 ID=mRNA_Ecto-sp13_S_contig1511.3860.1|Name=mRNA_Ecto-sp13_S_contig1511.3860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1511:4901..8586- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTTGCTTCCTCAGTCGTTACTCGGGCCGCGAGGCTGGCTCCTCG
AAGAGTGATCCCGTCGACCCCGAAACCTGCCCCAAAGATTCCCGGAACTC
TACCTTGCACGTGCAACCCATCGACCGCTCTCTGGCATCATGACTCGGGG
GAAACTTCATCGATCAAGACCGTGAGAGACGAGACGGAACTGGCCCAGCT
GTTGGCCGCTACCCGGCCCAGCTCTCTCGTAGTCGTCAAGTTCGGCGAAG
CTCGCTGCAAAGCTTCCAAGGTGGTCGAGGAAAAGTTCAAGCAAACAGCG
GCTGAGTTTGCCGAATGCGATAAAACGGACGTGCAATTCGCCAGCGTCGA
TTCGGGCAGCAATTGGCTTCTGTGCCAGAAAATGGGTATCAGATCGGTAC
CCCACGTGCAGATATTTTCCGGCTTCAATGGCAAGATTGCTGACTTCAGC
CTTGCTCCTCCCGAATACGATACCCTCGATGCTCTGCTGGGCGAACGACG
CGACTCGATGCTCGCTTGGAAACGGTAG
back to top