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Homology
BLAST of mRNA_Ecto-sp13_S_contig15076.3832.1 vs. uniprot
Match: A0A6H5LMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMH6_9PHAE) HSP 1 Score: 370 bits (950), Expect = 3.370e-112 Identity = 333/364 (91.48%), Postives = 335/364 (92.03%), Query Frame = 1
Query: 4 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLRAANDASEARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAELAGARRGLEDAAQE 1095
MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGM PLDREQNNP TTEE LS+PAPTSKQPT+TCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLRAAND SEARLR XXXXXXXXXXXXXXXXXXXXXXXXXXX ARLE ELVGRAEELR SE GNAALRRE AALRGEGEALA RA LEAELA ARRGLE AAQE
Sbjct: 1 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMAPLDREQNNPTTTEENLSVPAPTSKQPTSTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLRAANDVSEARLREAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXERADELTALSARLEVELVGRAEELRESEDGNAALRREVAALRGEGEALAARAGRLEAELADARRGLEGAAQE 364
BLAST of mRNA_Ecto-sp13_S_contig15076.3832.1 vs. uniprot
Match: D7G205_ECTSI (HMMR_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G205_ECTSI) HSP 1 Score: 343 bits (879), Expect = 1.690e-102 Identity = 323/369 (87.53%), Postives = 323/369 (87.53%), Query Frame = 1
Query: 4 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLRAANDASEARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAELAGARRGLEDAAQEAEAKA 1110
MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT LDREQNNP TTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LRAANDASEARL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARLEAELVGR EELR SE GNAALRREAAAL A RA RGL AQEAEAKA
Sbjct: 2 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT-LDREQNNPVTTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKREEALLRDKDGLRAANDASEARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALSARLEAELVGRGEELRESEDGNAALRREAAALXXXXXXXAARAXXXXXXXXXXXRGLXXXAQEAEAKA 369
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1737 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1734 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462802.5199523-CDS-Ecto-sp13_S_contig15076:225..819 | 1681462802.5199523-CDS-Ecto-sp13_S_contig15076:225..819 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15076 226..819 - |
| 1681462802.5289056-CDS-Ecto-sp13_S_contig15076:894..1374 | 1681462802.5289056-CDS-Ecto-sp13_S_contig15076:894..1374 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15076 895..1374 - |
| 1681462802.5370352-CDS-Ecto-sp13_S_contig15076:2022..2289 | 1681462802.5370352-CDS-Ecto-sp13_S_contig15076:2022..2289 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15076 2023..2289 - |
| 1681462802.5447266-CDS-Ecto-sp13_S_contig15076:3535..3928 | 1681462802.5447266-CDS-Ecto-sp13_S_contig15076:3535..3928 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig15076 3536..3928 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462802.5522494-UTR-Ecto-sp13_S_contig15076:3928..3931 | 1681462802.5522494-UTR-Ecto-sp13_S_contig15076:3928..3931 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig15076 3929..3931 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15076.3832.1 >prot_Ecto-sp13_S_contig15076.3832.1 ID=prot_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=578bp
MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKG MTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEK VKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVK RAQAAERKAATVIADAGRLEEAEAAASRLGAEVAAAALEAERAEAALDDL RQRKEELTSHAKDLEDRIDELVKAKAEIEFQASEAQKREEALLRDKVDLR AANDASEARLREAKAASQASSAAAQEATRRAESAGVELAAARERAGELTA LSARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAE LAGARRGLEDAAQEAEAKAAELSEAEAGLAALSEERAGGAALRQKLESTK EALAAAEAAGASLEERLEASERDAQRLARELEGAEKGLESARESVACLEG AVAKGAADAESLRQRLGDALAEGVEYADQHTRVEERLRSSEADCAALWEE REEAKARLCAAFVEGRALEEKLDESVAGSERLREELGRAEARLATAAREA EEAGDELSASRRQAAAMKEELEKMTNMW back to topmRNA from alignment at Ecto-sp13_S_contig15076:226..3931- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig15076.3832.1 ID=mRNA_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15076:226..3931- (Ectocarpus species13 EcNAP12_S_4_19m) CAAATGGCGGTGTCTTGGGCACAATCCAAGGTTGACCGCTTCGAGGAGAA
GATCACGGGATCTAACCTCGGGCCCGGAGACTATGACCCCTGCCTGCCGA
GGTCTCAGGGGATGGCCGGTGCCGTCAGCCTCGGCTTCACGTCCACAAAG
GGCATGACGCCGCTGGATCGCGAGCAAAACAACCCCGCAACGACGGAGGA
AGTTCTCAGCCTGCCTGCGCCGACCTCCAAGCAGCCCACGACTACGTGCG
GCTTCGGGCGCCCTCGCCCGGCCCTGAACGTTGGTGCGTCGAGGCTAGAG
AAGGTCAAGGCGGAGCAGCAGGAGAAGCAGCTGGTGCGGTTGGAGATGGA
AAGAGAGAAGCTCCAAGACGAGGTCAAGACGCTTAGGTCTCTGCAGGTAT
GTTGGGGCAGTACATGTACATGGGGCGCGCGCTGGAGACGACGGAGGGAT
AAAAAGGAGAGAAAGCCAAATGGCTGGAGGAAAATGTGCCTCTCGCATTG
GATGAAGGACATCGTGTGCTTGAGGCTTGCATACTAGGTGGCTTGTTTGG
TTTAAAATGCGTCATGCCTCTGGCGATGCAGGTTGTCATGTTCAGGGATG
GCATGCTTCCCGCCATTTCGGAATGATGTTCGAGGCAAGTGGAAGCATGC
GCACTACGACCTGCCCTGGGTGGAGAAGGGTGAAGTGAAAACGGCAGTCG
ATTTCTCTTGCGCAGGCCTGGCGTTACGAGACGCTGATACAGCAGCTATG
TGCTTTGTGTACGGTTTGCGTCGACAACTCTATCCCAAGGTGTAGCCCTC
ATCTCGGCGAAGCAGCCAAACTCGTTTGTATCTACTTGTACTAATGTAAA
ATGATAGTTGTTTACTGCTTTTGACTTCGGAAGGAAGAGGAGGATCTTTT
GCAGCAGCCAACGCATTTCGTACTCCATTTCATGATCCCGTTCGAGTCAG
AACGTGTATCTGCTGCCAGGATGCGCTGCCCTGTCGGTCTGAATAGCGCA
AGCAAGTGTTAAACGAGTGACAATTAAGTAGATACGACAACCGAGAAGCC
ATCCCCTTTTCGAAGGCAACGCCACCGCGGATCATGTCTCTCCTGCCATG
CACGGTACGCCTGTTTGTTGGTGGTAGGTGCGCCATGTGTGCCGTTGAGT
ACTCAGCGCCTACATGTATCAACGTGTACGATATTCTATGATACATGGTG
TCTCTCGTTGGCTCGAACGCAGGCACGCCCGCGAAGTTGATGGAAATCCC
GTGTTGGCTCCGCGGCGGGTCCGCTTGTCGGCTTAGTCTAGACCGGGAGA
ACATTTCACTGTCGGTGATTCGCATCCTCCATGGACTCTGAAGCTTGATC
TGGAAGCCAAGAAAATACTGATAGCATGTTTTGTCATCATTTGGACCTCT
GTTGGCTGACCCTTGGGTTCGACAACGATATCTCACGTCAACAAAGCCAT
GTTCTTTCAACTGCTGCTAACGTGCCTTGTCAACAAACTTTCTAGTGCGT
CGTAGCTGCGTAAGCTTCGCGTGCTACACCCCCGCCCCACCGAACGAAAA
AGATCGTGACCGCGGCAATGTGTGACCGATGCCACCCCCCCATTAGCCGT
TGATCCTGCCTTTCCACAAACCTACGCACAACAATAACGCAGGGAGCGCT
GGCGAAGAGCGAGAGGCATGCTCGAGCCGAGTCAGCAAAGGTGGTCAAGC
GCGCCCAGGCCGCCGAGCGCAAGGCCGCAACGGTCATCGCCGACGCCGGC
CGTCTCGAGGAAGCCGAGGCGGCGGCGTCCCGGCTGGGCGCGGAGGTGGC
CGCGGCCGCGCTCGAGGCGGAGCGGGCGGAAGCCGCCCTCGACGACCTCC
GGCAGCGGAAGGAGGAGCTCACCTCTCACGCGAAGGACCTGGAGGACAGG
ATCGACGAGGTGTGGTTGTGATGTCCATTAACAGGCCTCCACGCGAGGAT
GTTTGAAGCTTGGTTGCAGTAGGGCGTACGGGGTTGGGGTGGGGATAGGG
ATGGGGATACGAAACCCCCTGCCTGTTTTCTATAATTAATTATTTCATTC
TCGCGAAGGCGATTCTGTGATATGTGTTGGTGCTTGTGCTTGATCGTTTC
TGGCACTCTGGGTTTGATCCCGACGACCAAACTTTTCTTTGTTTTTTGGA
GGGGGGTGAGGGGTCATGTCGGTGCCGCTGCGGCGGCTGCCGGTTTTCCG
ATTCAAAGCTCTTTCGTGCTGAAACTGTTTTTTCGTAAGGCCGGTGGTGG
TGGCGGCAGCACCCACAGCAGGAGCGGAAGCTATGTATCCTTCGTAGATC
GGAGGTATGCGACATTCCCTCTCGTTGGATGACGGCTCCTTGTTAGATAT
AAGTCGTGCTTTGTTTTCTGTCGACGGCAAAAACTCGGAAAAAAAATGTG
TATAAACGCCCTCTGCCTCTTGCTTGGTAGCCTTGGGAGGTCAATCAGCC
TGCGTGAGTGCCTCGATCTCACGTCCGTCCCCAGTACCCACCAAGTACTC
GATGCATCCATCCACCTCAACCCGCCGCCCCTTCGTGTTGGTCGATGACA
AAATCAGCTCGTCAAGGCCAAGGCGGAGATCGAGTTCCAGGCGAGCGAGG
CGCAGAAGCGCGAGGAAGCGCTGCTGCGGGACAAGGTCGACCTGCGTGCC
GCAAACGACGCCAGCGAGGCCCGGCTCCGGGAGGCGAAAGCCGCCTCCCA
GGCGAGCTCCGCCGCGGCGCAGGAGGCCACCCGGAGGGCCGAGTCGGCGG
GCGTCGAGCTCGCCGCCGCCAGGGAAAGGGCGGGCGAGCTGACGGCGCTG
TCGGCCCGGCTGGAGGCCGAGCTCGTCGGCCGCGCGGAAGAGCTGCGCGT
GAGCGAGGGCGGCAACGCCGCGCTCCGCCGGGAGGCGGCCGCGCTGCGCG
GGGAGGGCGAGGCTCTCGCGACCCGCGCGCGGGGGCTGGAGGCCGAGCTC
GCCGGCGCGAGGCGGGGGCTCGAGGACGCCGCCCAGGAGGCCGAGGCGAA
GGCGGCGGAGCTGTCTGAGGCAGAGGCGGGACTCGCCGTGCTCCGCGAGA
GCCTGAGGGGCGTCGAGGCCGAGCTGGAGGCCTCTTCGTCCGCCAGGGCC
GAGCTCGAGAAGGCCCTGTCCGAAGAACGGGCCGGCGGCGCGGCCCTACG
CCAGAAGCTGGAGTCTACAAAGGAGGCGCTAGCCGCGGCCGAGGCCGCGG
GCGCTTCGCTGGAGGAGCGGCTCGAGGCCAGCGAGCGGGACGCCCAGCGT
CTTGCCCGGGAGCTGGAGGGGGCGGAGAAGGGCCTCGAGTCGGCTCGCGA
GAGCGTGGCGTGCCTGGAGGGGGCCGTCGCCAAGGGCGCCGCGGACGCTG
AGAGCCTCCGGCAGCGGCTCGGGGACGCCCTCGCGGAGGGGGTAGAGTAC
GCGGACCAGCACACCCGGGTGGAGGAGCGGCTCCGCAGCAGCGAGGCCGA
CTGCGCGGCGCTCTGGGAGGAGCGCGAGGAGGCCAAGGCGAGGCTGTGCG
CGGCGTTCGTGGAAGGGAGGGCACTCGAGGAGAAGCTGGACGAGAGCGTC
GCGGGGTCGGAGCGGCTGCGGGAGGAGCTGGGAAGGGCGGAGGCCCGGCT
GGCGACGGCGGCGAGGGAGGCGGAGGAGGCGGGGGACGAGCTGAGCGCCA
GCCGCCGACAGGCCGCCGCCATGAAGGAAGAGCTCGAGAAGATGACCAAT
ATGTGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig15076:226..3931- >mRNA_Ecto-sp13_S_contig15076.3832.1 ID=mRNA_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15076:226..3931- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCGGTGTCTTGGGCACAATCCAAGGTTGACCGCTTCGAGGAGAAGAT CACGGGATCTAACCTCGGGCCCGGAGACTATGACCCCTGCCTGCCGAGGT CTCAGGGGATGGCCGGTGCCGTCAGCCTCGGCTTCACGTCCACAAAGGGC ATGACGCCGCTGGATCGCGAGCAAAACAACCCCGCAACGACGGAGGAAGT TCTCAGCCTGCCTGCGCCGACCTCCAAGCAGCCCACGACTACGTGCGGCT TCGGGCGCCCTCGCCCGGCCCTGAACGTTGGTGCGTCGAGGCTAGAGAAG GTCAAGGCGGAGCAGCAGGAGAAGCAGCTGGTGCGGTTGGAGATGGAAAG AGAGAAGCTCCAAGACGAGGTCAAGACGCTTAGGTCTCTGCAGGGAGCGC TGGCGAAGAGCGAGAGGCATGCTCGAGCCGAGTCAGCAAAGGTGGTCAAG CGCGCCCAGGCCGCCGAGCGCAAGGCCGCAACGGTCATCGCCGACGCCGG CCGTCTCGAGGAAGCCGAGGCGGCGGCGTCCCGGCTGGGCGCGGAGGTGG CCGCGGCCGCGCTCGAGGCGGAGCGGGCGGAAGCCGCCCTCGACGACCTC CGGCAGCGGAAGGAGGAGCTCACCTCTCACGCGAAGGACCTGGAGGACAG GATCGACGAGCTCGTCAAGGCCAAGGCGGAGATCGAGTTCCAGGCGAGCG AGGCGCAGAAGCGCGAGGAAGCGCTGCTGCGGGACAAGGTCGACCTGCGT GCCGCAAACGACGCCAGCGAGGCCCGGCTCCGGGAGGCGAAAGCCGCCTC CCAGGCGAGCTCCGCCGCGGCGCAGGAGGCCACCCGGAGGGCCGAGTCGG CGGGCGTCGAGCTCGCCGCCGCCAGGGAAAGGGCGGGCGAGCTGACGGCG CTGTCGGCCCGGCTGGAGGCCGAGCTCGTCGGCCGCGCGGAAGAGCTGCG CGTGAGCGAGGGCGGCAACGCCGCGCTCCGCCGGGAGGCGGCCGCGCTGC GCGGGGAGGGCGAGGCTCTCGCGACCCGCGCGCGGGGGCTGGAGGCCGAG CTCGCCGGCGCGAGGCGGGGGCTCGAGGACGCCGCCCAGGAGGCCGAGGC GAAGGCGGCGGAGCTGTCTGAGGCAGAGGCGGGACTCGCCGCCCTGTCCG AAGAACGGGCCGGCGGCGCGGCCCTACGCCAGAAGCTGGAGTCTACAAAG GAGGCGCTAGCCGCGGCCGAGGCCGCGGGCGCTTCGCTGGAGGAGCGGCT CGAGGCCAGCGAGCGGGACGCCCAGCGTCTTGCCCGGGAGCTGGAGGGGG CGGAGAAGGGCCTCGAGTCGGCTCGCGAGAGCGTGGCGTGCCTGGAGGGG GCCGTCGCCAAGGGCGCCGCGGACGCTGAGAGCCTCCGGCAGCGGCTCGG GGACGCCCTCGCGGAGGGGGTAGAGTACGCGGACCAGCACACCCGGGTGG AGGAGCGGCTCCGCAGCAGCGAGGCCGACTGCGCGGCGCTCTGGGAGGAG CGCGAGGAGGCCAAGGCGAGGCTGTGCGCGGCGTTCGTGGAAGGGAGGGC ACTCGAGGAGAAGCTGGACGAGAGCGTCGCGGGGTCGGAGCGGCTGCGGG AGGAGCTGGGAAGGGCGGAGGCCCGGCTGGCGACGGCGGCGAGGGAGGCG GAGGAGGCGGGGGACGAGCTGAGCGCCAGCCGCCGACAGGCCGCCGCCAT GAAGGAAGAGCTCGAGAAGATGACCAATATGTGG back to top
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