mRNA_Ecto-sp13_S_contig15076.3832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15076.3832.1
Unique NamemRNA_Ecto-sp13_S_contig15076.3832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15076.3832.1 vs. uniprot
Match: A0A6H5LMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMH6_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 3.370e-112
Identity = 333/364 (91.48%), Postives = 335/364 (92.03%), Query Frame = 1
Query:    4 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLRAANDASEARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAELAGARRGLEDAAQE 1095
            MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGM PLDREQNNP TTEE LS+PAPTSKQPT+TCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLRAAND SEARLR    XXXXXXXXXXXXXXXXXXXXXXXXXXX          ARLE ELVGRAEELR SE GNAALRRE AALRGEGEALA RA  LEAELA ARRGLE AAQE
Sbjct:    1 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMAPLDREQNNPTTTEENLSVPAPTSKQPTSTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLRAANDVSEARLREAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXERADELTALSARLEVELVGRAEELRESEDGNAALRREVAALRGEGEALAARAGRLEAELADARRGLEGAAQE 364          
BLAST of mRNA_Ecto-sp13_S_contig15076.3832.1 vs. uniprot
Match: D7G205_ECTSI (HMMR_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G205_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 1.690e-102
Identity = 323/369 (87.53%), Postives = 323/369 (87.53%), Query Frame = 1
Query:    4 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLRAANDASEARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAELAGARRGLEDAAQEAEAKA 1110
            MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT LDREQNNP TTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             LRAANDASEARL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ARLEAELVGR EELR SE GNAALRREAAAL       A RA           RGL   AQEAEAKA
Sbjct:    2 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT-LDREQNNPVTTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKREEALLRDKDGLRAANDASEARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALSARLEAELVGRGEELRESEDGNAALRREAAALXXXXXXXAARAXXXXXXXXXXXRGLXXXAQEAEAKA 369          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15076.3832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LMH6_9PHAE3.370e-11291.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G205_ECTSI1.690e-10287.53HMMR_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15076contigEcto-sp13_S_contig15076:226..3931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1737
Hectar predicted targeting categoryother localisation
Exons4
Cds size1734
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.5199523-CDS-Ecto-sp13_S_contig15076:225..8191681462802.5199523-CDS-Ecto-sp13_S_contig15076:225..819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15076 226..819 -
1681462802.5289056-CDS-Ecto-sp13_S_contig15076:894..13741681462802.5289056-CDS-Ecto-sp13_S_contig15076:894..1374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15076 895..1374 -
1681462802.5370352-CDS-Ecto-sp13_S_contig15076:2022..22891681462802.5370352-CDS-Ecto-sp13_S_contig15076:2022..2289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15076 2023..2289 -
1681462802.5447266-CDS-Ecto-sp13_S_contig15076:3535..39281681462802.5447266-CDS-Ecto-sp13_S_contig15076:3535..3928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15076 3536..3928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.5522494-UTR-Ecto-sp13_S_contig15076:3928..39311681462802.5522494-UTR-Ecto-sp13_S_contig15076:3928..3931Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15076 3929..3931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15076.3832.1prot_Ecto-sp13_S_contig15076.3832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15076 226..3928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15076.3832.1

>prot_Ecto-sp13_S_contig15076.3832.1 ID=prot_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=578bp
MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKG
MTPLDREQNNPATTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEK
VKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVK
RAQAAERKAATVIADAGRLEEAEAAASRLGAEVAAAALEAERAEAALDDL
RQRKEELTSHAKDLEDRIDELVKAKAEIEFQASEAQKREEALLRDKVDLR
AANDASEARLREAKAASQASSAAAQEATRRAESAGVELAAARERAGELTA
LSARLEAELVGRAEELRVSEGGNAALRREAAALRGEGEALATRARGLEAE
LAGARRGLEDAAQEAEAKAAELSEAEAGLAALSEERAGGAALRQKLESTK
EALAAAEAAGASLEERLEASERDAQRLARELEGAEKGLESARESVACLEG
AVAKGAADAESLRQRLGDALAEGVEYADQHTRVEERLRSSEADCAALWEE
REEAKARLCAAFVEGRALEEKLDESVAGSERLREELGRAEARLATAAREA
EEAGDELSASRRQAAAMKEELEKMTNMW
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mRNA from alignment at Ecto-sp13_S_contig15076:226..3931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15076.3832.1 ID=mRNA_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15076:226..3931- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAATGGCGGTGTCTTGGGCACAATCCAAGGTTGACCGCTTCGAGGAGAA GATCACGGGATCTAACCTCGGGCCCGGAGACTATGACCCCTGCCTGCCGA GGTCTCAGGGGATGGCCGGTGCCGTCAGCCTCGGCTTCACGTCCACAAAG GGCATGACGCCGCTGGATCGCGAGCAAAACAACCCCGCAACGACGGAGGA AGTTCTCAGCCTGCCTGCGCCGACCTCCAAGCAGCCCACGACTACGTGCG GCTTCGGGCGCCCTCGCCCGGCCCTGAACGTTGGTGCGTCGAGGCTAGAG AAGGTCAAGGCGGAGCAGCAGGAGAAGCAGCTGGTGCGGTTGGAGATGGA AAGAGAGAAGCTCCAAGACGAGGTCAAGACGCTTAGGTCTCTGCAGGTAT GTTGGGGCAGTACATGTACATGGGGCGCGCGCTGGAGACGACGGAGGGAT AAAAAGGAGAGAAAGCCAAATGGCTGGAGGAAAATGTGCCTCTCGCATTG GATGAAGGACATCGTGTGCTTGAGGCTTGCATACTAGGTGGCTTGTTTGG TTTAAAATGCGTCATGCCTCTGGCGATGCAGGTTGTCATGTTCAGGGATG GCATGCTTCCCGCCATTTCGGAATGATGTTCGAGGCAAGTGGAAGCATGC GCACTACGACCTGCCCTGGGTGGAGAAGGGTGAAGTGAAAACGGCAGTCG ATTTCTCTTGCGCAGGCCTGGCGTTACGAGACGCTGATACAGCAGCTATG TGCTTTGTGTACGGTTTGCGTCGACAACTCTATCCCAAGGTGTAGCCCTC ATCTCGGCGAAGCAGCCAAACTCGTTTGTATCTACTTGTACTAATGTAAA ATGATAGTTGTTTACTGCTTTTGACTTCGGAAGGAAGAGGAGGATCTTTT GCAGCAGCCAACGCATTTCGTACTCCATTTCATGATCCCGTTCGAGTCAG AACGTGTATCTGCTGCCAGGATGCGCTGCCCTGTCGGTCTGAATAGCGCA AGCAAGTGTTAAACGAGTGACAATTAAGTAGATACGACAACCGAGAAGCC ATCCCCTTTTCGAAGGCAACGCCACCGCGGATCATGTCTCTCCTGCCATG CACGGTACGCCTGTTTGTTGGTGGTAGGTGCGCCATGTGTGCCGTTGAGT ACTCAGCGCCTACATGTATCAACGTGTACGATATTCTATGATACATGGTG TCTCTCGTTGGCTCGAACGCAGGCACGCCCGCGAAGTTGATGGAAATCCC GTGTTGGCTCCGCGGCGGGTCCGCTTGTCGGCTTAGTCTAGACCGGGAGA ACATTTCACTGTCGGTGATTCGCATCCTCCATGGACTCTGAAGCTTGATC TGGAAGCCAAGAAAATACTGATAGCATGTTTTGTCATCATTTGGACCTCT GTTGGCTGACCCTTGGGTTCGACAACGATATCTCACGTCAACAAAGCCAT GTTCTTTCAACTGCTGCTAACGTGCCTTGTCAACAAACTTTCTAGTGCGT CGTAGCTGCGTAAGCTTCGCGTGCTACACCCCCGCCCCACCGAACGAAAA AGATCGTGACCGCGGCAATGTGTGACCGATGCCACCCCCCCATTAGCCGT TGATCCTGCCTTTCCACAAACCTACGCACAACAATAACGCAGGGAGCGCT GGCGAAGAGCGAGAGGCATGCTCGAGCCGAGTCAGCAAAGGTGGTCAAGC GCGCCCAGGCCGCCGAGCGCAAGGCCGCAACGGTCATCGCCGACGCCGGC CGTCTCGAGGAAGCCGAGGCGGCGGCGTCCCGGCTGGGCGCGGAGGTGGC CGCGGCCGCGCTCGAGGCGGAGCGGGCGGAAGCCGCCCTCGACGACCTCC GGCAGCGGAAGGAGGAGCTCACCTCTCACGCGAAGGACCTGGAGGACAGG ATCGACGAGGTGTGGTTGTGATGTCCATTAACAGGCCTCCACGCGAGGAT GTTTGAAGCTTGGTTGCAGTAGGGCGTACGGGGTTGGGGTGGGGATAGGG ATGGGGATACGAAACCCCCTGCCTGTTTTCTATAATTAATTATTTCATTC TCGCGAAGGCGATTCTGTGATATGTGTTGGTGCTTGTGCTTGATCGTTTC TGGCACTCTGGGTTTGATCCCGACGACCAAACTTTTCTTTGTTTTTTGGA GGGGGGTGAGGGGTCATGTCGGTGCCGCTGCGGCGGCTGCCGGTTTTCCG ATTCAAAGCTCTTTCGTGCTGAAACTGTTTTTTCGTAAGGCCGGTGGTGG TGGCGGCAGCACCCACAGCAGGAGCGGAAGCTATGTATCCTTCGTAGATC GGAGGTATGCGACATTCCCTCTCGTTGGATGACGGCTCCTTGTTAGATAT AAGTCGTGCTTTGTTTTCTGTCGACGGCAAAAACTCGGAAAAAAAATGTG TATAAACGCCCTCTGCCTCTTGCTTGGTAGCCTTGGGAGGTCAATCAGCC TGCGTGAGTGCCTCGATCTCACGTCCGTCCCCAGTACCCACCAAGTACTC GATGCATCCATCCACCTCAACCCGCCGCCCCTTCGTGTTGGTCGATGACA AAATCAGCTCGTCAAGGCCAAGGCGGAGATCGAGTTCCAGGCGAGCGAGG CGCAGAAGCGCGAGGAAGCGCTGCTGCGGGACAAGGTCGACCTGCGTGCC GCAAACGACGCCAGCGAGGCCCGGCTCCGGGAGGCGAAAGCCGCCTCCCA GGCGAGCTCCGCCGCGGCGCAGGAGGCCACCCGGAGGGCCGAGTCGGCGG GCGTCGAGCTCGCCGCCGCCAGGGAAAGGGCGGGCGAGCTGACGGCGCTG TCGGCCCGGCTGGAGGCCGAGCTCGTCGGCCGCGCGGAAGAGCTGCGCGT GAGCGAGGGCGGCAACGCCGCGCTCCGCCGGGAGGCGGCCGCGCTGCGCG GGGAGGGCGAGGCTCTCGCGACCCGCGCGCGGGGGCTGGAGGCCGAGCTC GCCGGCGCGAGGCGGGGGCTCGAGGACGCCGCCCAGGAGGCCGAGGCGAA GGCGGCGGAGCTGTCTGAGGCAGAGGCGGGACTCGCCGTGCTCCGCGAGA GCCTGAGGGGCGTCGAGGCCGAGCTGGAGGCCTCTTCGTCCGCCAGGGCC GAGCTCGAGAAGGCCCTGTCCGAAGAACGGGCCGGCGGCGCGGCCCTACG CCAGAAGCTGGAGTCTACAAAGGAGGCGCTAGCCGCGGCCGAGGCCGCGG GCGCTTCGCTGGAGGAGCGGCTCGAGGCCAGCGAGCGGGACGCCCAGCGT CTTGCCCGGGAGCTGGAGGGGGCGGAGAAGGGCCTCGAGTCGGCTCGCGA GAGCGTGGCGTGCCTGGAGGGGGCCGTCGCCAAGGGCGCCGCGGACGCTG AGAGCCTCCGGCAGCGGCTCGGGGACGCCCTCGCGGAGGGGGTAGAGTAC GCGGACCAGCACACCCGGGTGGAGGAGCGGCTCCGCAGCAGCGAGGCCGA CTGCGCGGCGCTCTGGGAGGAGCGCGAGGAGGCCAAGGCGAGGCTGTGCG CGGCGTTCGTGGAAGGGAGGGCACTCGAGGAGAAGCTGGACGAGAGCGTC GCGGGGTCGGAGCGGCTGCGGGAGGAGCTGGGAAGGGCGGAGGCCCGGCT GGCGACGGCGGCGAGGGAGGCGGAGGAGGCGGGGGACGAGCTGAGCGCCA GCCGCCGACAGGCCGCCGCCATGAAGGAAGAGCTCGAGAAGATGACCAAT ATGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15076:226..3931-

>mRNA_Ecto-sp13_S_contig15076.3832.1 ID=mRNA_Ecto-sp13_S_contig15076.3832.1|Name=mRNA_Ecto-sp13_S_contig15076.3832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15076:226..3931- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGTCTTGGGCACAATCCAAGGTTGACCGCTTCGAGGAGAAGAT
CACGGGATCTAACCTCGGGCCCGGAGACTATGACCCCTGCCTGCCGAGGT
CTCAGGGGATGGCCGGTGCCGTCAGCCTCGGCTTCACGTCCACAAAGGGC
ATGACGCCGCTGGATCGCGAGCAAAACAACCCCGCAACGACGGAGGAAGT
TCTCAGCCTGCCTGCGCCGACCTCCAAGCAGCCCACGACTACGTGCGGCT
TCGGGCGCCCTCGCCCGGCCCTGAACGTTGGTGCGTCGAGGCTAGAGAAG
GTCAAGGCGGAGCAGCAGGAGAAGCAGCTGGTGCGGTTGGAGATGGAAAG
AGAGAAGCTCCAAGACGAGGTCAAGACGCTTAGGTCTCTGCAGGGAGCGC
TGGCGAAGAGCGAGAGGCATGCTCGAGCCGAGTCAGCAAAGGTGGTCAAG
CGCGCCCAGGCCGCCGAGCGCAAGGCCGCAACGGTCATCGCCGACGCCGG
CCGTCTCGAGGAAGCCGAGGCGGCGGCGTCCCGGCTGGGCGCGGAGGTGG
CCGCGGCCGCGCTCGAGGCGGAGCGGGCGGAAGCCGCCCTCGACGACCTC
CGGCAGCGGAAGGAGGAGCTCACCTCTCACGCGAAGGACCTGGAGGACAG
GATCGACGAGCTCGTCAAGGCCAAGGCGGAGATCGAGTTCCAGGCGAGCG
AGGCGCAGAAGCGCGAGGAAGCGCTGCTGCGGGACAAGGTCGACCTGCGT
GCCGCAAACGACGCCAGCGAGGCCCGGCTCCGGGAGGCGAAAGCCGCCTC
CCAGGCGAGCTCCGCCGCGGCGCAGGAGGCCACCCGGAGGGCCGAGTCGG
CGGGCGTCGAGCTCGCCGCCGCCAGGGAAAGGGCGGGCGAGCTGACGGCG
CTGTCGGCCCGGCTGGAGGCCGAGCTCGTCGGCCGCGCGGAAGAGCTGCG
CGTGAGCGAGGGCGGCAACGCCGCGCTCCGCCGGGAGGCGGCCGCGCTGC
GCGGGGAGGGCGAGGCTCTCGCGACCCGCGCGCGGGGGCTGGAGGCCGAG
CTCGCCGGCGCGAGGCGGGGGCTCGAGGACGCCGCCCAGGAGGCCGAGGC
GAAGGCGGCGGAGCTGTCTGAGGCAGAGGCGGGACTCGCCGCCCTGTCCG
AAGAACGGGCCGGCGGCGCGGCCCTACGCCAGAAGCTGGAGTCTACAAAG
GAGGCGCTAGCCGCGGCCGAGGCCGCGGGCGCTTCGCTGGAGGAGCGGCT
CGAGGCCAGCGAGCGGGACGCCCAGCGTCTTGCCCGGGAGCTGGAGGGGG
CGGAGAAGGGCCTCGAGTCGGCTCGCGAGAGCGTGGCGTGCCTGGAGGGG
GCCGTCGCCAAGGGCGCCGCGGACGCTGAGAGCCTCCGGCAGCGGCTCGG
GGACGCCCTCGCGGAGGGGGTAGAGTACGCGGACCAGCACACCCGGGTGG
AGGAGCGGCTCCGCAGCAGCGAGGCCGACTGCGCGGCGCTCTGGGAGGAG
CGCGAGGAGGCCAAGGCGAGGCTGTGCGCGGCGTTCGTGGAAGGGAGGGC
ACTCGAGGAGAAGCTGGACGAGAGCGTCGCGGGGTCGGAGCGGCTGCGGG
AGGAGCTGGGAAGGGCGGAGGCCCGGCTGGCGACGGCGGCGAGGGAGGCG
GAGGAGGCGGGGGACGAGCTGAGCGCCAGCCGCCGACAGGCCGCCGCCAT
GAAGGAAGAGCTCGAGAAGATGACCAATATGTGG
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