mRNA_Ecto-sp13_S_contig1498.3771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1498.3771.1
Unique NamemRNA_Ecto-sp13_S_contig1498.3771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1498.3771.1 vs. uniprot
Match: D7G3G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.250e-33
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 MEPGSTAGPRRIGTGGVRRERTATNTPRLRKSNCRFRSKGEVKRRRDNDRRLADGEGKRDSARQNALGGAGSGSRG 228
            MEPG TAGPRR+GTGG RRERTATNTPRLRKSN RFRSKGEV+RRRDND RLADGEGKRDSAR NA GGAG GSRG
Sbjct:    1 MEPGGTAGPRRVGTGGTRRERTATNTPRLRKSNRRFRSKGEVERRRDNDGRLADGEGKRDSARPNAEGGAGGGSRG 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1498.3771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G3_ECTSI3.250e-3388.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1498contigEcto-sp13_S_contig1498:6264..6615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004470.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.1457725-CDS-Ecto-sp13_S_contig1498:6263..63591681462798.1457725-CDS-Ecto-sp13_S_contig1498:6263..6359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1498 6264..6359 +
1681462798.1637053-CDS-Ecto-sp13_S_contig1498:6447..66151681462798.1637053-CDS-Ecto-sp13_S_contig1498:6447..6615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1498 6448..6615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1498.3771.1prot_Ecto-sp13_S_contig1498.3771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1498 6264..6615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1498.3771.1

>prot_Ecto-sp13_S_contig1498.3771.1 ID=prot_Ecto-sp13_S_contig1498.3771.1|Name=mRNA_Ecto-sp13_S_contig1498.3771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MEPGSTAGPRRIGTGGVRRERTATNTPRLRKSNCRFRSKGEVKRRRDNDR
RLADGEGKRDSARQNALGGAGSGSRGGQSWEPGAPSLT
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mRNA from alignment at Ecto-sp13_S_contig1498:6264..6615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1498.3771.1 ID=mRNA_Ecto-sp13_S_contig1498.3771.1|Name=mRNA_Ecto-sp13_S_contig1498.3771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1498:6264..6615+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCTGGAAGCACGGCGGGGCCGCGCCGGATTGGCACCGGCGGCGT
TCGGAGAGAGAGGACTGCGACCAACACCCCGAGGCTTCGAAAATCGGTAG
GGAGACAGAGGGCCAACTTCCTTGCTTTTTTCGTGTGTGCTTGCGTTCTG
TCTTGATTTTTTTTCATCACGATCTGCAACTAAGAACTGCCGTTTTCGGA
GCAAGGGAGAGGTGAAAAGAAGGAGAGACAATGATCGGAGGCTCGCGGAC
GGGGAGGGGAAGAGGGATTCTGCTCGCCAAAATGCCTTAGGCGGGGCTGG
TAGTGGATCGCGTGGGGGACAATCATGGGAACCTGGTGCCCCATCGTTGA
CG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1498:6264..6615+

>mRNA_Ecto-sp13_S_contig1498.3771.1 ID=mRNA_Ecto-sp13_S_contig1498.3771.1|Name=mRNA_Ecto-sp13_S_contig1498.3771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1498:6264..6615+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCTGGAAGCACGGCGGGGCCGCGCCGGATTGGCACCGGCGGCGT
TCGGAGAGAGAGGACTGCGACCAACACCCCGAGGCTTCGAAAATCGAACT
GCCGTTTTCGGAGCAAGGGAGAGGTGAAAAGAAGGAGAGACAATGATCGG
AGGCTCGCGGACGGGGAGGGGAAGAGGGATTCTGCTCGCCAAAATGCCTT
AGGCGGGGCTGGTAGTGGATCGCGTGGGGGACAATCATGGGAACCTGGTG
CCCCATCGTTGACG
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