mRNA_Ecto-sp13_S_contig14978.3770.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14978.3770.1
Unique NamemRNA_Ecto-sp13_S_contig14978.3770.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14978.3770.1 vs. uniprot
Match: D8LPN2_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPN2_ECTSI)

HSP 1 Score: 514 bits (1323), Expect = 1.860e-176
Identity = 306/332 (92.17%), Postives = 311/332 (93.67%), Query Frame = 1 
Query:  346 RSASEAIGGEANAASGTPTSRRRRGQDKRRGQDRDEEALGGKGQGWGATLQHVNLFSDAEREAGKILGQNRDHQREKKEQELQKQQRSGLAPTALGDGSAELKDKDSQPWYTQPQPQSTTCVSKVAARTVRLGREVTGQEAEEAIKRDQGRKGRADPMGSLFRSGAQTTRGSLPFERRGTSYQPEAATANLPGAAGLCVDEATLHSDRRKHAGKAKXXXXXXXXXXXXXXXXXXXXXXXETRTRSDRDRFARRHGDSAAGLSGGRADEATDAQREQKLKDLRSRRLAREGGERERQIRLLAEREMAGHSLPDERTRAYNNQYNAPAARQNRI 1341
            RSASE I GEANAASGTP SRRRRGQDKRR QDRDEEALGGKGQGWGATLQHVNLFSDAEREAGKILGQN DHQREKKEQELQ+QQRSGLAPTALG+GSAELKDK+SQPWYTQ QPQST CVSKVAARTVRLGREVTGQEAEEAIKRDQGRKG+ADPMGSLFRSGAQ  RGSLP ERRGTSYQPEAATANLPGAAGLCVDEAT HS+R K      XXXXXXXXXXXXXXXXXXXXXXX TRTRSDRDRFARRH DSAAGLSGGRADEATDAQREQKLKDLRSRRLAREGGERERQIRLLAEREMAG SLPDERTRAYNNQYNAPAARQNRI
Sbjct:   58 RSASETIEGEANAASGTPASRRRRGQDKRRSQDRDEEALGGKGQGWGATLQHVNLFSDAEREAGKILGQNSDHQREKKEQELQRQQRSGLAPTALGEGSAELKDKESQPWYTQLQPQSTACVSKVAARTVRLGREVTGQEAEEAIKRDQGRKGQADPMGSLFRSGAQPMRGSLPLERRGTSYQPEAATANLPGAAGLCVDEATSHSNRGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTRSDRDRFARRHSDSAAGLSGGRADEATDAQREQKLKDLRSRRLAREGGERERQIRLLAEREMAGQSLPDERTRAYNNQYNAPAARQNRI 389
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14978.3770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPN2_ECTSI1.860e-17692.17Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14978contigEcto-sp13_S_contig14978:1670..3647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1804
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionCBF1-interacting co-repressor CIR, N-terminal domain
Ec32 orthologEc-18_001840.1
Cds size531
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.0849972-UTR-Ecto-sp13_S_contig14978:1669..21261681462798.0849972-UTR-Ecto-sp13_S_contig14978:1669..2126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14978 1670..2126 -
1681462798.1179857-UTR-Ecto-sp13_S_contig14978:2831..36471681462798.1179857-UTR-Ecto-sp13_S_contig14978:2831..3647Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14978 2832..3647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.099297-CDS-Ecto-sp13_S_contig14978:2126..22941681462798.099297-CDS-Ecto-sp13_S_contig14978:2126..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14978 2127..2294 -
1681462798.1095743-CDS-Ecto-sp13_S_contig14978:2468..28311681462798.1095743-CDS-Ecto-sp13_S_contig14978:2468..2831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14978 2469..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14978.3770.1prot_Ecto-sp13_S_contig14978.3770.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14978 2127..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14978.3770.1

>prot_Ecto-sp13_S_contig14978.3770.1 ID=prot_Ecto-sp13_S_contig14978.3770.1|Name=mRNA_Ecto-sp13_S_contig14978.3770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MGSLFRSGAQTTRGSLPFERRGTSYQPEAATANLPGAAGLCVDEATLHSD
RRKHAGKAKKVKKDKKGKKGKKKNAKEKRHSKETRTRSDRDRFARRHGDS
AAGLSGGRADEATDAQREQKLKDLRSRRLAREGGERERQIRLLAEREMAG
HSLPDERTRAYNNQYNAPAARQNRIL*
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mRNA from alignment at Ecto-sp13_S_contig14978:1670..3647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14978.3770.1 ID=mRNA_Ecto-sp13_S_contig14978.3770.1|Name=mRNA_Ecto-sp13_S_contig14978.3770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14978:1670..3647- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAGATATGACAGGGCTACCGTCTGCTGGGTTTTCTTGGACTACGACGG
CTGCTGCACAGCAGTCACAAGTATTCCCAAGCCTATACGACGCTTGTTCA
ACGTAACGGCAGTGTAACACTGCCATGAACAGTGATTCTGGCCACTGTCG
CAGTTTGCTTGGTGTACGAGGCGCGGTGCCAAATATTTACTACACGTAAC
TCGGAGAGACGTGTTCTCTGTTTCTGATCGCAGTAGAAATGCCACCAAAC
CTGACTATTTTCGCCCATTTGATGTTGCAAGATTGAGGAGGCACTAACGT
ATCACTTAAGGAATTCTCGCCTTGTTTGCAAACTTATTCATTCATAGGTC
GGCTTCCGAGGCAATCGGAGGCGAGGCAAACGCGGCCTCAGGGACGCCGA
CCAGCCGGAGGCGACGAGGTCAAGACAAGCGACGAGGTCAAGACAGAGAC
GAGGAAGCTCTCGGAGGAAAGGGGCAAGGCTGGGGAGCAACGCTGCAGCA
TGTTAACTTGTTCAGTGACGCCGAACGAGAGGCGGGAAAGATCCTCGGGC
AGAACAGGGACCACCAGCGCGAAAAAAAAGAGCAGGAACTGCAAAAACAA
CAGCGTTCGGGGTTGGCTCCCACCGCTCTTGGTGATGGATCGGCTGAGCT
GAAAGACAAGGATTCCCAACCTTGGTACACCCAACCACAACCACAGTCGA
CCACTTGTGTGTCCAAGGTAGCGGCACGCACAGTACGGCTGGGAAGAGAG
GTGACAGGACAAGAGGCGGAAGAGGCCATCAAGAGGGATCAGGGGCGAAA
GGGCCGGGCAGATCCCATGGGCTCCTTGTTTCGATCTGGGGCGCAAACGA
CGCGAGGGAGTCTGCCTTTCGAAAGAAGGGGAACGTCTTACCAGCCGGAA
GCGGCCACGGCGAACCTGCCTGGTGCTGCCGGGTTGTGTGTGGATGAAGC
CACTTTACACAGCGACAGACGGAAACACGCCGGGAAGGCCAAGAAAGTCA
AGAAGGACAAGAAGGGCAAGAAGGGCAAGAAGAAAAACGCTAAAGAGAAA
AGACATTCCAAAGAGACGCGAACACGCAGCGATCGGGATAGATTTGCCAG
GAGACACGGCGACAGTGCTGCCGGATTATCTGGAGGCCGAGCGGATGAAG
CGACGGATGCTCAACGTGAACAAAAATTGGTGAGAATCAATCAGGTTGCT
GTGATTTCTAGCGAAGACAGCGTCGTCACCTCTGGGATGTCTTTTTGCAG
TCCGCCCCGCCTTACCAATCTCCTTGGCATGAATCACTCTCACGAAAATT
GCTCTCATCGGACCTGTTGTTGATTCTGTTCGATATCTTGTGCTGCCGCG
CAGAAGGATCTGCGTAGCCGACGATTGGCGCGTGAAGGCGGTGAACGAGA
GCGACAGATTCGACTTTTAGCTGAACGGGAGATGGCTGGCCATTCCCTTC
CGGACGAACGAACTAGGGCCTACAACAACCAGTACAACGCTCCTGCTGCT
CGGCAAAATAGAATTCTATGAAGAAAAAGAAAGTTGCAGTATCATAGGAG
ACGGAGACAAATAAGCTGTTATCGGAATTGCAAGAATGTTCGCTTGTTCG
CCGTGTCTGAGCGGCGCATGTTGAACAAGCGGTTGTTGCGCCTAGTCAGC
ACTTTTGTTAACGACAAGAGTCTGTATCTCCCAGGATTTTCGCTGGTGCG
TGGCTACTAAGCGGGTGATTTGCATGAGTCTGTCCGGCGTGCTTGGTTGC
GTCACATTCGCCTGCATCGCAAGGAAGCAACATGAACTGCAGAAAACAGA
GGTAGTCCTGTCCATGCCATTCGTCAGCCATGTGCTACCCAGCTCCAGCG
TTGCTGATGCTTTTCTACAGCAGAGAAAATCGGAATAAACCATTTGCGGA
AGTTCGCGGCGATGATCCACGAAACCAAAATTCTGAGCCAGGTTTGAGCC
GCAATCACTTGAGGAGGGTGGATTTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14978:1670..3647-

>mRNA_Ecto-sp13_S_contig14978.3770.1 ID=mRNA_Ecto-sp13_S_contig14978.3770.1|Name=mRNA_Ecto-sp13_S_contig14978.3770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14978:1670..3647- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCCTTGTTTCGATCTGGGGCGCAAACGACGCGAGGGAGTCTGCC
TTTCGAAAGAAGGGGAACGTCTTACCAGCCGGAAGCGGCCACGGCGAACC
TGCCTGGTGCTGCCGGGTTGTGTGTGGATGAAGCCACTTTACACAGCGAC
AGACGGAAACACGCCGGGAAGGCCAAGAAAGTCAAGAAGGACAAGAAGGG
CAAGAAGGGCAAGAAGAAAAACGCTAAAGAGAAAAGACATTCCAAAGAGA
CGCGAACACGCAGCGATCGGGATAGATTTGCCAGGAGACACGGCGACAGT
GCTGCCGGATTATCTGGAGGCCGAGCGGATGAAGCGACGGATGCTCAACG
TGAACAAAAATTGAAGGATCTGCGTAGCCGACGATTGGCGCGTGAAGGCG
GTGAACGAGAGCGACAGATTCGACTTTTAGCTGAACGGGAGATGGCTGGC
CATTCCCTTCCGGACGAACGAACTAGGGCCTACAACAACCAGTACAACGC
TCCTGCTGCTCGGCAAAATAGAATTCTATGA
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