mRNA_Ecto-sp13_S_contig14966.3761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14966.3761.1
Unique NamemRNA_Ecto-sp13_S_contig14966.3761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: D8LJN5_ECTSI (Ubiquitin conjugating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN5_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.620e-62
Identity = 110/201 (54.73%), Postives = 110/201 (54.73%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNG                                                                                           TQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV
Sbjct:   12 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNG-------------------------------------------------------------------------------------------TQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 121          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A835Z3M3_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.160e-37
Identity = 78/201 (38.81%), Postives = 92/201 (45.77%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            +PRNFKLLEELEK EKG GD + SFGLV+ DDIFMTDWNG+ILGP G                                                                                           T HE RLY +R+HCGE YPD  P VRF+ ++N+ CVDQR+GEV + +LPVL+ WNRNYGIEQV
Sbjct:   12 IPRNFKLLEELEKSEKGHGDMNTSFGLVNQDDIFMTDWNGSILGPPG-------------------------------------------------------------------------------------------TIHETRLYEVRLHCGESYPDVAPEVRFLHRINLSCVDQRTGEVIKARLPVLSSWNRNYGIEQV 121          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A2H5MYB3_CITUN (UBC core domain-containing protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5MYB3_CITUN)

HSP 1 Score: 137 bits (346), Expect = 7.160e-37
Identity = 79/214 (36.92%), Postives = 113/214 (52.80%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRL--NEPFGCACSRG-----------RTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNF+LLEELE+GEKG+GD +VS+G+ DGDDI+M  W GT++GP+      + +  + W S+K  QA + A  W  RR            P S    +  +  N     AC+ G           R   YS A +E    +         T HEGR+Y L++ C ++YP++ P VRF S++NM CV+  +G V   K  +LA W R Y +E +
Sbjct:   12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNYALYIDVQYMSSWASLK--QARNVASNWYMRRSLRPQYLMFLEPPLSWVLRVSSILVNGGSALACNIGFELCHTDSAHERKTSYSVADIEKSVVL---------TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDI 214          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A7S2EGX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGX9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.360e-33
Identity = 74/201 (36.82%), Postives = 85/201 (42.29%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNFKLLEELE  EKG+GD ++S+GLVD  D F+T+WNG ILGP G                                                                                           TQH+ R Y LRIHCGE YP   P VRFVS++NM CVDQ++G V  NKLP    WNRN GIEQV
Sbjct:   40 VPRNFKLLEELEHSEKGLGDMAISYGLVDSGDTFLTNWNGGILGPPG-------------------------------------------------------------------------------------------TQHDSRFYELRIHCGERYPAAPPDVRFVSRINMACVDQKTGVVLHNKLPATRNWNRNMGIEQV 149          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A4Y9ZLF1_9AGAM (UBC core domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZLF1_9AGAM)

HSP 1 Score: 125 bits (315), Expect = 5.310e-33
Identity = 78/201 (38.81%), Postives = 101/201 (50.25%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNF+LLEELEKGEKG+GD S S+GL DGDDI M++WNGTI+GP  V       R   +  +  +  DSK                                  FG           SC                 QT HE R+Y+L+I CGE YPD  P V+FVS++N+  V+Q  G+V R+KLP+LA W+R+  IE +
Sbjct:   23 VPRNFRLLEELEKGEKGIGDGSCSYGLEDGDDILMSNWNGTIIGPGHV-------RIFCFSFLIALANDSK----------------------------------FG-----------SCGV---------------QTVHENRIYSLKILCGENYPDAPPTVQFVSRVNLPFVNQTDGKVDRSKLPLLAAWDRSKSIETI 156          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A5B1QIS4_9AGAM (UBC-like protein n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1QIS4_9AGAM)

HSP 1 Score: 123 bits (309), Expect = 1.230e-32
Identity = 74/201 (36.82%), Postives = 91/201 (45.27%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNF+LLEELEKGEKG+GD S S+GL DGDDI M+DWNGTI+GP                                                                   G TV                        HE R+Y+L+I CGE YPD+ P+V+F+S++N+  V Q  G+V R+KLPVLA WNRN  IE V
Sbjct:    4 VPRNFRLLEELEKGEKGIGDGSCSYGLEDGDDILMSDWNGTIIGP-------------------------------------------------------------------GHTV------------------------HENRIYSLKIVCGESYPDQPPIVQFISRVNLPFVSQTDGKVDRSKLPVLANWNRNSSIETV 113          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: W2RIE0_9EURO (UBC core domain-containing protein n=2 Tax=Chaetothyriales TaxID=34395 RepID=W2RIE0_9EURO)

HSP 1 Score: 123 bits (309), Expect = 1.260e-32
Identity = 71/201 (35.32%), Postives = 91/201 (45.27%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNF+LLEELEKGEKG+G  + S+GL DGDD+ MT+WNGTILGP                                                   PH                                        + HE R+Y++ IHCG++YPD+ PV++FVSK+N+ CVDQR+G+V   KLP LA W R Y +E V
Sbjct:    5 VPRNFRLLEELEKGEKGLGAEACSYGLADGDDLMMTNWNGTILGP---------------------------------------------------PH----------------------------------------SAHENRIYSVNIHCGDDYPDKPPVLQFVSKINVPCVDQRTGKVDPTKLPCLASWRREYTMETV 114          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A7R9WWW4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWW4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.260e-32
Identity = 73/201 (36.32%), Postives = 87/201 (43.28%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNFKLLEELEK EKG+GD ++SFGLVD  D F+++WNG ILGP G                                                                                           TQH+GR Y LRIHC E+YP   P VRFVSK+NM CVD RSG +  +K+P +  WNRN GIEQ+
Sbjct:   13 VPRNFKLLEELEKSEKGLGDMAISFGLVDSGDTFLSNWNGGILGPGG-------------------------------------------------------------------------------------------TQHDGRFYQLRIHCPEKYPAVPPEVRFVSKINMTCVDSRSGALKIDKVPAMRNWNRNMGIEQI 122          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: S7QBC6_GLOTA (UBC-like protein n=2 Tax=Gloeophyllales TaxID=452339 RepID=S7QBC6_GLOTA)

HSP 1 Score: 122 bits (306), Expect = 3.480e-32
Identity = 71/201 (35.32%), Postives = 91/201 (45.27%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            +PRNF+LLEELEKGEKG+GD S S+GL DGDD+ M+ WNGTI+GP                                                                   G TV                        HE R+Y+L+IHCG++YP+R P V+F+SK+N+  V Q  G+V  +KLPVLA WNRN+ IE V
Sbjct:    4 IPRNFRLLEELEKGEKGIGDGSCSYGLEDGDDMLMSSWNGTIIGP-------------------------------------------------------------------GHTV------------------------HENRIYSLKIHCGDDYPERPPTVQFISKVNLPFVSQTDGKVDPSKLPVLAHWNRNHSIETV 113          
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Match: A0A662XS71_9STRA (UBC core domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XS71_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.540e-32
Identity = 74/201 (36.82%), Postives = 90/201 (44.78%), Query Frame = 1
Query:    1 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPRAWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIFRLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQV 603
            VPRNFKLLEELE  EKG GD S+S+GL   DDIF+T+W GTILGP GV  A                                                FR++  FG                              QT H+GR+Y+LRIHC ++YP   P V F S++NM CVD +SG V   +L  L  W+RN GIE V
Sbjct:   46 VPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGVRAA-----------------------------------------------AFRVDVSFG------------------------------QTCHDGRIYSLRIHCSDQYPHIPPEVHFTSRINMSCVDAQSGRVDPRRLAALGNWHRNNGIENV 169          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14966.3761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN5_ECTSI1.620e-6254.73Ubiquitin conjugating enzyme n=2 Tax=Ectocarpus Ta... [more]
A0A835Z3M3_9STRA1.160e-3738.81Ubiquitin conjugating enzyme n=1 Tax=Tribonema min... [more]
A0A2H5MYB3_CITUN7.160e-3736.92UBC core domain-containing protein n=1 Tax=Citrus ... [more]
A0A7S2EGX9_9STRA4.360e-3336.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A4Y9ZLF1_9AGAM5.310e-3338.81UBC core domain-containing protein n=1 Tax=Hericiu... [more]
A0A5B1QIS4_9AGAM1.230e-3236.82UBC-like protein n=1 Tax=Dentipellis sp. KUC8613 T... [more]
W2RIE0_9EURO1.260e-3235.32UBC core domain-containing protein n=2 Tax=Chaetot... [more]
A0A7R9WWW4_9STRA2.260e-3236.32Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
S7QBC6_GLOTA3.480e-3235.32UBC-like protein n=2 Tax=Gloeophyllales TaxID=4523... [more]
A0A662XS71_9STRA8.540e-3236.82UBC core domain-containing protein (Fragment) n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14966contigEcto-sp13_S_contig14966:2232..3074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score199.5
Seed ortholog evalue1.5e-48
Seed eggNOG ortholog2880.D8LJN5
Preferred nameUBE2V2
Model size606
KEGG koko:K03164,ko:K10704,ko:K20656
KEGG Pathwayko01524,ko04624,map01524,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000726,GO:0000729,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006355,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030522,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033674,GO:0034097,GO:0034622,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040012,GO:0042176,GO:0042221,GO:0042275,GO:0042325,GO:0042327,GO:0042592,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043524,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045739,GO:0045859,GO:0045860,GO:0045862,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050803,GO:0050807,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051338,GO:0051347,GO:0051403,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0061057,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090325,GO:0097458,GO:0098542,GO:0120025,GO:0120035,GO:0140096,GO:1901214,GO:1901215,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903827,GO:1990234,GO:2000008,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001020,GO:2001022,GO:2001141
Exons4
EggNOG free text desc.protein K63-linked ubiquitination
EggNOG OGsKOG0896@1,KOG0896@2759
Ec32 ortholog descriptionubiquitin conjugating enzyme
Ec32 orthologEc-17_002730.1
EC5.99.1.3
Cds size606
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.504321-CDS-Ecto-sp13_S_contig14966:2231..24841681462797.504321-CDS-Ecto-sp13_S_contig14966:2231..2484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14966 2232..2484 -
1681462797.5181398-CDS-Ecto-sp13_S_contig14966:2569..26531681462797.5181398-CDS-Ecto-sp13_S_contig14966:2569..2653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14966 2570..2653 -
1681462797.5277386-CDS-Ecto-sp13_S_contig14966:2712..28361681462797.5277386-CDS-Ecto-sp13_S_contig14966:2712..2836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14966 2713..2836 -
1681462797.5364387-CDS-Ecto-sp13_S_contig14966:2929..30741681462797.5364387-CDS-Ecto-sp13_S_contig14966:2929..3074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14966 2930..3074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14966.3761.1prot_Ecto-sp13_S_contig14966.3761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14966 2232..3074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14966.3761.1

>prot_Ecto-sp13_S_contig14966.3761.1 ID=prot_Ecto-sp13_S_contig14966.3761.1|Name=mRNA_Ecto-sp13_S_contig14966.3761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
VPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGVPR
AWNTRRSAHWFSIKPVQADSKARKWGDRRQAHRTQSRAPLTPCSCQPHIF
RLNEPFGCACSRGRTVDYSCAFVEGKTPVPPTPPPPRQTQHEGRLYTLRI
HCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQ
V*
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mRNA from alignment at Ecto-sp13_S_contig14966:2232..3074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14966.3761.1 ID=mRNA_Ecto-sp13_S_contig14966.3761.1|Name=mRNA_Ecto-sp13_S_contig14966.3761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14966:2232..3074- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCTCGCAACTTCAAGCTGTTGGAGGAGCTAGAGAAGGGGGAGAAGGG AGTGGGGGATCACAGCGTGAGCTTTGGGCTGGTGGACGGGGACGACATTT TCATGACCGACTGGAACGGAACCATCCTCGGTCCTAACGGGGTGCGTTGT AGCTGCTGCCGTTGCTGTTGCCGCCCAGAACGTTCGAATGTTTCGCCAGT ATTTTAACAGCAGGAAGCCCATCCAGCAGATTTAACAGCTCGTGCATGGA ATACAAGGCGTAGTGCCCACTGGTTTTCGATCAAGCCAGTACAAGCAGAT TCGAAAGCTCGGAAGTGGGGTGACAGGCGTCAAGCCCACCGCACACAGAG CAGAGCACCTCTGTTCTAACGGAGGCGTCTACTCTGCCGGCTTCATGTGA GGAAGCCTTCCGCGTAGAGAGCACGCCCTGCTCCTGTCAACCACATATTT TTCGTTTGAATGAACCCTTTGGGTGTGCATGCAGTCGTGGCAGGACTGTT GACTAGTTGCTCGCCTTATAGGCCTTTCGCGGTAAATCTCCAATCATAGC TGGAACGGTTTTCCGCGATTTCTGAGATGCGTGGTCAGAGTTCGTGTGCT TTCGTGGAAGGGAAGACACCCGTCCCCCCAACCCCCCCCCCCCCACGCCA GACCCAGCACGAGGGGCGGTTGTACACCTTGAGGATACACTGCGGCGAGG AATACCCCGACCGCTGCCCGGTGGTGCGGTTCGTGAGCAAGCTCAACATG GGTTGCGTCGACCAGAGATCCGGGGAGGTGTTCCGGAACAAGCTACCCGT GCTGGCGCAGTGGAACAGGAATTATGGCATCGAGCAGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14966:2232..3074-

>mRNA_Ecto-sp13_S_contig14966.3761.1 ID=mRNA_Ecto-sp13_S_contig14966.3761.1|Name=mRNA_Ecto-sp13_S_contig14966.3761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14966:2232..3074- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCTCGCAACTTCAAGCTGTTGGAGGAGCTAGAGAAGGGGGAGAAGGG
AGTGGGGGATCACAGCGTGAGCTTTGGGCTGGTGGACGGGGACGACATTT
TCATGACCGACTGGAACGGAACCATCCTCGGTCCTAACGGGGTGCCTCGT
GCATGGAATACAAGGCGTAGTGCCCACTGGTTTTCGATCAAGCCAGTACA
AGCAGATTCGAAAGCTCGGAAGTGGGGTGACAGGCGTCAAGCCCACCGCA
CACAGAGCAGAGCACCTCTCACGCCCTGCTCCTGTCAACCACATATTTTT
CGTTTGAATGAACCCTTTGGGTGTGCATGCAGTCGTGGCAGGACTGTTGA
CTATTCGTGTGCTTTCGTGGAAGGGAAGACACCCGTCCCCCCAACCCCCC
CCCCCCCACGCCAGACCCAGCACGAGGGGCGGTTGTACACCTTGAGGATA
CACTGCGGCGAGGAATACCCCGACCGCTGCCCGGTGGTGCGGTTCGTGAG
CAAGCTCAACATGGGTTGCGTCGACCAGAGATCCGGGGAGGTGTTCCGGA
ACAAGCTACCCGTGCTGGCGCAGTGGAACAGGAATTATGGCATCGAGCAG
GTGTGA
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