mRNA_Ecto-sp13_S_contig14945.3755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14945.3755.1
Unique NamemRNA_Ecto-sp13_S_contig14945.3755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14945.3755.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 9.930e-37
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    7 NSQVTVSAWIHVDREMSDIKTVLGNKMSGCGSDALGFALYVNDWNKKDGQLWLEWGDGALGCHKV--KMPSVVGQ 225
            + +VTVSAWIHVDREMSDIKTVLGNKMSGCGSDALGFALYVNDWNKKDGQLWLEWGDGALGCHK+  K    VGQ
Sbjct:  187 SEEVTVSAWIHVDREMSDIKTVLGNKMSGCGSDALGFALYVNDWNKKDGQLWLEWGDGALGCHKIHSKKKVPVGQ 261
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BLAST of mRNA_Ecto-sp13_S_contig14945.3755.1 vs. uniprot
Match: A0A6U4HU98_9STRA (alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HU98_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   10 SQVTVSAWIHVDREMSD--------IKTVLGNKMSGCGSDAL--GFALYVNDWNKKDGQLWLEWGDGALGCHKVKM-PSVVGQG 228
            +++T SAWI  + E+          ++TVL N+ SGCG+DAL  GF+L+VN+W   DG L LEW D  LGC K+   P ++  G
Sbjct:  307 ARLTASAWIFPNAEVDGSGVGVPQTMRTVLTNRRSGCGTDALRHGFSLFVNNWETADGCLVLEWADSRLGCQKLSTAPGMIPSG 390
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BLAST of mRNA_Ecto-sp13_S_contig14945.3755.1 vs. uniprot
Match: F0Y5N1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N1_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-10
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   16 VTVSAWIHVDR--EMSDIKTVLGNKMSGC--GSDALGFALYVNDWNKKDGQLWLEWGDGALGCHKV 201
            V+ +A+++VD   + +DIKTV+ NK +GC  G    G+AL VN+W  +DGQL LEWGD A GC K+
Sbjct:  109 VSGAAFVYVDGADKSADIKTVVSNKETGCDVGDARDGYALAVNNWETRDGQLTLEWGDAATGCRKL 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14945.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGK4_ECTSI9.930e-3786.67alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6U4HU98_9STRA1.390e-1142.86alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva Tax... [more]
F0Y5N1_AURAN1.240e-1050.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14945contigEcto-sp13_S_contig14945:4056..4289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score140.2
Seed ortholog evalue4.1e-31
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
Model size234
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
Exons1
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
Cds size234
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.9979458-CDS-Ecto-sp13_S_contig14945:4055..42891681462796.9979458-CDS-Ecto-sp13_S_contig14945:4055..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14945 4056..4289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14945.3755.1prot_Ecto-sp13_S_contig14945.3755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14945 4056..4289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14945.3755.1

>prot_Ecto-sp13_S_contig14945.3755.1 ID=prot_Ecto-sp13_S_contig14945.3755.1|Name=mRNA_Ecto-sp13_S_contig14945.3755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MFNSQVTVSAWIHVDREMSDIKTVLGNKMSGCGSDALGFALYVNDWNKKD
GQLWLEWGDGALGCHKVKMPSVVGQGWY
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mRNA from alignment at Ecto-sp13_S_contig14945:4056..4289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14945.3755.1 ID=mRNA_Ecto-sp13_S_contig14945.3755.1|Name=mRNA_Ecto-sp13_S_contig14945.3755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14945:4056..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAATTCCCAGGTGACGGTTTCGGCGTGGATCCACGTGGACCGCGA
GATGTCAGACATCAAGACCGTCCTGGGGAACAAGATGTCCGGCTGCGGCT
CCGACGCCCTCGGCTTCGCCCTGTACGTGAACGATTGGAACAAGAAGGAC
GGGCAGCTGTGGCTCGAGTGGGGGGACGGTGCGCTTGGATGTCATAAGGT
GAAGATGCCGAGCGTTGTTGGGCAAGGTTGGTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14945:4056..4289-

>mRNA_Ecto-sp13_S_contig14945.3755.1 ID=mRNA_Ecto-sp13_S_contig14945.3755.1|Name=mRNA_Ecto-sp13_S_contig14945.3755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14945:4056..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAATTCCCAGGTGACGGTTTCGGCGTGGATCCACGTGGACCGCGA
GATGTCAGACATCAAGACCGTCCTGGGGAACAAGATGTCCGGCTGCGGCT
CCGACGCCCTCGGCTTCGCCCTGTACGTGAACGATTGGAACAAGAAGGAC
GGGCAGCTGTGGCTCGAGTGGGGGGACGGTGCGCTTGGATGTCATAAGGT
GAAGATGCCGAGCGTTGTTGGGCAAGGTTGGTAT
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