mRNA_Ecto-sp13_S_contig1492.3745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1492.3745.1
Unique NamemRNA_Ecto-sp13_S_contig1492.3745.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1492.3745.1 vs. uniprot
Match: D7FKK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKK1_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 1.890e-189
Identity = 283/322 (87.89%), Postives = 294/322 (91.30%), Query Frame = 1 
Query:    1 MAIWKRFTGAVDSSAQSFLKNKRFSREKRKFTWDWHAWNLVFVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQPGNTGGEGGAGEQQLGHERHVPADSESIERRLATIERMLSMQGGSGSSTPGAGVDNGSGSMTDSTLSSTACSRQGKRVHSARNTASKADSSSGAEVSTLDEAIETASAAGSWLLQTGEAQGKRLLQICRSWMAGDEQKEDATRPGKPGSRNIGTGHREPGANHADVRRQEEPAATALTERAANSSTGSTGEESALVKSDSKGAHRGAWRRGKLDKNDGVR 966
            MAIWKRFTGAVDSSAQSFLKNK+FSREKRKFTWDWHAWNL FVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQPGN GGEGGAGEQQLGHERHVPADSESIE RLATIERMLSMQGGS SSTPGAG+DNGSG MTDSTLS T+ S QGKRVHSARN ASKADSSSGAEVSTLD AIET SAAGSWLLQTGEAQGK      RSWMA DE++EDAT   KPGSR IGTGH+EPGANHADVRR+E+ AA AL ER ANSS GSTGEESALV+SDSKG+H GAWRRGKLD+NDGVR
Sbjct:    1 MAIWKRFTGAVDSSAQSFLKNKKFSREKRKFTWDWHAWNLAFVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQPGNAGGEGGAGEQQLGHERHVPADSESIEGRLATIERMLSMQGGSSSSTPGAGIDNGSGPMTDSTLSGTSGSGQGKRVHSARNAASKADSSSGAEVSTLDRAIETVSAAGSWLLQTGEAQGKXXXXXGRSWMAEDERQEDATPSEKPGSRKIGTGHQEPGANHADVRRREDLAAKALAERVANSSAGSTGEESALVESDSKGSHSGAWRRGKLDENDGVR 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1492.3745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKK1_ECTSI1.890e-18987.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1492contigEcto-sp13_S_contig1492:8864..10965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size969
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001790.1
Cds size969
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.1924493-CDS-Ecto-sp13_S_contig1492:8863..93511681462796.1924493-CDS-Ecto-sp13_S_contig1492:8863..9351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 8864..9351 -
1681462796.2021432-CDS-Ecto-sp13_S_contig1492:9507..96461681462796.2021432-CDS-Ecto-sp13_S_contig1492:9507..9646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 9508..9646 -
1681462796.2102091-CDS-Ecto-sp13_S_contig1492:10039..103041681462796.2102091-CDS-Ecto-sp13_S_contig1492:10039..10304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 10040..10304 -
1681462796.2189147-CDS-Ecto-sp13_S_contig1492:10888..109651681462796.2189147-CDS-Ecto-sp13_S_contig1492:10888..10965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 10889..10965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1492.3745.1prot_Ecto-sp13_S_contig1492.3745.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1492 8864..10965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1492.3745.1

>prot_Ecto-sp13_S_contig1492.3745.1 ID=prot_Ecto-sp13_S_contig1492.3745.1|Name=mRNA_Ecto-sp13_S_contig1492.3745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
MAIWKRFTGAVDSSAQSFLKNKRFSREKRKFTWDWHAWNLVFVSTPSLVL
AYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAG
NQPGNTGGEGGAGEQQLGHERHVPADSESIERRLATIERMLSMQGGSGSS
TPGAGVDNGSGSMTDSTLSSTACSRQGKRVHSARNTASKADSSSGAEVST
LDEAIETASAAGSWLLQTGEAQGKRLLQICRSWMAGDEQKEDATRPGKPG
SRNIGTGHREPGANHADVRRQEEPAATALTERAANSSTGSTGEESALVKS
DSKGAHRGAWRRGKLDKNDGVR*
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mRNA from alignment at Ecto-sp13_S_contig1492:8864..10965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1492.3745.1 ID=mRNA_Ecto-sp13_S_contig1492.3745.1|Name=mRNA_Ecto-sp13_S_contig1492.3745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:8864..10965- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCTGGAAGAGGTTCACCGGAGCGGTAGACTCAAGCGCCCAGTC
GTTTCTGAAAAACAAGAGGTTTAGCAGGTGAGAGCACCTCCTGAACTACT
GTGCTCCGCGCCTGCAGGACGAAGAAACGCTGTTCCCGGTAGATAACACC
CCCCCCGGAGTTGAACCAAGAAGTGCACGTGATAGATATCGCCGGCAGCC
ACGTCCCATAGATATGATCGAATTCACCATGGAAGTACACACGGGCACGT
CAACAGCTCTGTAGCATGTTTTTGGTTTACAGCAGTCGTAGTTGACTGAA
CAGAGCCATTCATTTTCGTACATAAAATTACTCCACCACAGCAGTAGTGG
CATTTGTACTGCTGTTTACTCTTGTACTTTGCTTGCTGCTGCTGCTGTCG
AGTCGTGGACGAAGTACTGCAGCAACACCATACCCACACAAGAGGAACGT
TTTTTCAACCTTCAAGAAGTCATCGCCTCTTGCGGCTTTGTCATTGCACA
TGAAAACCTGTCGTCCTCTTGGGGTGGTATCAAAATATTTGAACGCGAGG
TGTGCAATCGATGTTATCTCAAACGGAGGTGATGTGTCTGAGAGAGCGAT
TACGATGTGCCGATTCGCCGCGGTTCGTTCCTCCTGCCGCTCTCATCTGA
TCTTGTCGCAGGGAAAAGAGAAAGTTCACGTGGGATTGGCACGCGTGGAA
CTTGGTGTTCGTGTCGACCCCGTCCTTGGTGCTAGCCTACTATCTTCACG
GTGTAGAGAAGCAAATGCTGGAGGACGCGGCCATCCGGGAAGAGATCCAG
GAGCGCACTGGTGTAAGTAGCCGCGGCTTCTTGATACCAAAGAAGGAGGT
TCGGGAAGAGGTGCTGGGTATGCTGAGTGCTGGAAACCAACCAGGAAACA
CGGGCGGCGAGGGCGGTGCCGGAGAGGTCAGTTGATCGCCCACTCGGTTG
TTCTAGGCAGCACTGCCTTCATTTGTTTTTTTCGCATGTCCGTGTTGCTG
CATCGTTTGAGCGCCGGAGGAGCGACGTGACACATCTTTGCGGTGTGTGG
TTTGCACTCCTAAACTGTCAAGTCTATTAGTCCATGTGCGGGTTGAGGAT
AGTGGTCGTCTCTGCCATAACGCGTGTGAAACCTAAGTATTGCGCGGAGG
ATCAAAACGACGGAGGACTGCAGACCTCGACGTGCGACGCAAAACCGATC
GATTTCCTTCGTCTTTCTGTTGCTCTTTCTTGGCGCCGAGTCGCGCCAGG
CCCCCGGATGACACCTTGAACTCTACCATACCTCTCGCTTTCCTTGGTGT
TTTCCAATAAATCCGCCAGCAGCAGCTCGGTCATGAACGACACGTACCGG
CAGATAGTGAATCCATCGAGCGCAGACTGGCCACCATCGAGAGGATGCTT
AGCATGCAGGGCGGCTCCGGCTCATCAACACCAGGGGCTGGCGTCGACAA
CGGATCAGGTAATAATGCTGAGACGTGACAGGCGAAAATTAAGGGGCCAT
CACGGTGTTTGACACGCGCTCAAAGAGTGCTTGGTTCGAATGCTGTCCAG
CCCCCATACATTTTGACACTTTCCATTAACGTCGCTCCTGAAAAAAATTG
TTTCCCAGCGGCAGGATCAATGACGGACTCCACGCTCAGCAGCACCGCTT
GTTCTCGCCAAGGGAAAAGAGTCCACAGTGCTAGAAACACAGCGAGCAAG
GCGGACAGCAGCTCTGGTGCCGAAGTGTCAACTTTAGATGAGGCAATAGA
AACAGCGTCAGCAGCGGGTAGCTGGTTGCTTCAAACCGGCGAGGCGCAAG
GCAAGCGCCTCTTGCAGATTTGTCGGAGTTGGATGGCTGGGGATGAGCAA
AAAGAAGACGCAACCCGCCCGGGAAAACCCGGGTCGAGAAATATCGGAAC
CGGGCACCGAGAGCCAGGAGCAAACCATGCGGACGTACGTAGACAGGAAG
AGCCAGCAGCAACGGCGCTTACAGAGAGGGCGGCGAATAGTAGTACTGGC
AGCACGGGCGAAGAGTCTGCGTTGGTGAAAAGCGATAGCAAGGGGGCCCA
TAGAGGGGCTTGGCGTCGAGGGAAGTTGGATAAAAACGACGGTGTACGAT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1492:8864..10965-

>mRNA_Ecto-sp13_S_contig1492.3745.1 ID=mRNA_Ecto-sp13_S_contig1492.3745.1|Name=mRNA_Ecto-sp13_S_contig1492.3745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:8864..10965- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCTGGAAGAGGTTCACCGGAGCGGTAGACTCAAGCGCCCAGTC
GTTTCTGAAAAACAAGAGGTTTAGCAGGGAAAAGAGAAAGTTCACGTGGG
ATTGGCACGCGTGGAACTTGGTGTTCGTGTCGACCCCGTCCTTGGTGCTA
GCCTACTATCTTCACGGTGTAGAGAAGCAAATGCTGGAGGACGCGGCCAT
CCGGGAAGAGATCCAGGAGCGCACTGGTGTAAGTAGCCGCGGCTTCTTGA
TACCAAAGAAGGAGGTTCGGGAAGAGGTGCTGGGTATGCTGAGTGCTGGA
AACCAACCAGGAAACACGGGCGGCGAGGGCGGTGCCGGAGAGCAGCAGCT
CGGTCATGAACGACACGTACCGGCAGATAGTGAATCCATCGAGCGCAGAC
TGGCCACCATCGAGAGGATGCTTAGCATGCAGGGCGGCTCCGGCTCATCA
ACACCAGGGGCTGGCGTCGACAACGGATCAGGATCAATGACGGACTCCAC
GCTCAGCAGCACCGCTTGTTCTCGCCAAGGGAAAAGAGTCCACAGTGCTA
GAAACACAGCGAGCAAGGCGGACAGCAGCTCTGGTGCCGAAGTGTCAACT
TTAGATGAGGCAATAGAAACAGCGTCAGCAGCGGGTAGCTGGTTGCTTCA
AACCGGCGAGGCGCAAGGCAAGCGCCTCTTGCAGATTTGTCGGAGTTGGA
TGGCTGGGGATGAGCAAAAAGAAGACGCAACCCGCCCGGGAAAACCCGGG
TCGAGAAATATCGGAACCGGGCACCGAGAGCCAGGAGCAAACCATGCGGA
CGTACGTAGACAGGAAGAGCCAGCAGCAACGGCGCTTACAGAGAGGGCGG
CGAATAGTAGTACTGGCAGCACGGGCGAAGAGTCTGCGTTGGTGAAAAGC
GATAGCAAGGGGGCCCATAGAGGGGCTTGGCGTCGAGGGAAGTTGGATAA
AAACGACGGTGTACGATGA
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