mRNA_Ecto-sp13_S_contig1491.3735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1491.3735.1
Unique NamemRNA_Ecto-sp13_S_contig1491.3735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1491.3735.1 vs. uniprot
Match: A0A6H5K5H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H0_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 2.680e-62
Identity = 194/268 (72.39%), Postives = 199/268 (74.25%), Query Frame = 3 
Query:  129 MGFGRGGHGAGKAPLIGDDGAKGRDMEGINGSSSPGGEGARGQLDGLRNDSDGINTAAAARASPAVATAVGRRERRRLGGKGKXXXNQDGKXXXXXXXXXXXXXXXXXXXXXXXXGAGETGNKSXXXXXXXXXXXXXXXEEGSGGEDAQPSGGNDGPGIEGSAEEVDESGPGPEAADDLGEVEVDVQVEAENDGLDRPPKAEIEEAGGEEDGDSTDGGGD-VESGSSSGKSEGIGAANAAQXXXXXXXXXXXXXXXXXXEDAGASNVE 929
            MGFGRGG GAGKAPLIGDDGAKGRDM GI GSSSPGGEGARGQLDGLRN SDG N AAAARASPAVATAVG+RERRRLG KG    +QD  XXXXXXXXXXXXXXXXXXXXXXXX      NKS    XXXXXXXXXXX       DAQPSGG DGPGIEGSAEEVDESGP PEAAD LGEVEVDVQVEAENDG+DRPPKAEIEEAG              VESGSSSGK EGIGA +AAQ                  ED G S+VE
Sbjct:    1 MGFGRGGLGAGKAPLIGDDGAKGRDMVGIYGSSSPGGEGARGQLDGLRNHSDGKNAAAAARASPAVATAVGQRERRRLGDKGNDKKSQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NKSHDSDXXXXXXXXXXXXXXXXXXDAQPSGGVDGPGIEGSAEEVDESGPEPEAADGLGEVEVDVQVEAENDGVDRPPKAEIEEAGXXXXXXXXXXXXXXVESGSSSGKIEGIGATDAAQSTASSSDQRDSSGDSAAVEDVGGSDVE 267
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BLAST of mRNA_Ecto-sp13_S_contig1491.3735.1 vs. uniprot
Match: D8LHM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.270e-55
Identity = 176/221 (79.64%), Postives = 182/221 (82.35%), Query Frame = 3 
Query:  129 MGFGRGGHGAGKAPLIGDDGAKGRDMEGINGSSSPGGEGARGQLDGLRNDSDGINTAAAARASPAVATAVGRRERRRLGGKGKXXXNQDGKXXXXXXXXXXXXXXXXXXXXXXXXGAGETGNKSXXXXXXXXXXXXXXX----EEGSGGEDAQPSGGNDGPGIEGSAEEVDESGPGPEAADDLGEVEVDVQVEAENDGLDRPPKAEIEEAGGEEDGDSTDG 779
            MGFGRGG GAGKAPLIGDDGAKGRDME INGSSSPGGEG RGQLDGLRN SDG  TAAAARASPAVATA+G+R          XXX     XXXXXXXXXXXXXXXXXXXXXX  GAG+     XXXXXXXXXXXXXXX    EEGSGGEDA PSGG DGP IEGSAEEVDESGP PE AD LGEVEVDVQVEA++DG DRPPKAEIEEAGGEE+GDSTDG
Sbjct:    1 MGFGRGGLGAGKAPLIGDDGAKGRDMESINGSSSPGGEGPRGQLDGLRNHSDGKITAAAARASPAVATAIGQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKGAGKKXXXXXXXXXXXXXXXXXXXXXXXEEGSGGEDAHPSGGVDGPEIEGSAEEVDESGPEPEVADGLGEVEVDVQVEAKDDGADRPPKAEIEEAGGEEEGDSTDG 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1491.3735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5H0_9PHAE2.680e-6272.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHM7_ECTSI1.270e-5579.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1491contigEcto-sp13_S_contig1491:1204..3767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1005
Hectar predicted targeting categoryother localisation
Exons2
Cds size876
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.4021378-CDS-Ecto-sp13_S_contig1491:1203..20121681462795.4021378-CDS-Ecto-sp13_S_contig1491:1203..2012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1491 1204..2012 -
1681462795.4200673-CDS-Ecto-sp13_S_contig1491:3572..36391681462795.4200673-CDS-Ecto-sp13_S_contig1491:3572..3639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1491 3573..3639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.433789-UTR-Ecto-sp13_S_contig1491:3639..37671681462795.433789-UTR-Ecto-sp13_S_contig1491:3639..3767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1491 3640..3767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1491.3735.1prot_Ecto-sp13_S_contig1491.3735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1491 1204..3639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1491.3735.1

>prot_Ecto-sp13_S_contig1491.3735.1 ID=prot_Ecto-sp13_S_contig1491.3735.1|Name=mRNA_Ecto-sp13_S_contig1491.3735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=292bp
MGFGRGGHGAGKAPLIGDDGAKGRDMEGINGSSSPGGEGARGQLDGLRND
SDGINTAAAARASPAVATAVGRRERRRLGGKGKDKKNQDGKEDEKGEKKR
EANNKKNKDDDQRDKGAGETGNKSHDSDDDGDGDGNGDGEEGSGGEDAQP
SGGNDGPGIEGSAEEVDESGPGPEAADDLGEVEVDVQVEAENDGLDRPPK
AEIEEAGGEEDGDSTDGGGDVESGSSSGKSEGIGAANAAQSTASSSNQRD
SSGGSPVVEDAGASNVEAEEREDGGPGEGGGGASPAEPEEAG
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mRNA from alignment at Ecto-sp13_S_contig1491:1204..3767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1491.3735.1 ID=mRNA_Ecto-sp13_S_contig1491.3735.1|Name=mRNA_Ecto-sp13_S_contig1491.3735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1491:1204..3767- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAAGGGGGAATCGGTCTCTGTCCCTTTCTCTCTTTCAACAGCTCCCGAG
CTGGAAGCGAACTCTATCCTGCCTACTTCTGTGACGGCTCTCTGTTCTCT
TACGTACAGCAGCTGAGAACCGCGAAAGATGGGGTTCGGACGCGGAGGCC
ACGGCGCCGGGAAAGCGCCTCTCATAGGCGACGATGGCGCTAAAGGTGCG
TATGGCCGAGAGAAGAAGACGCAGAAGGAGAGGTAGAGAGAGAAAAAGCG
GCTTTGTTTGCTCCGTTTGGTTCGGATCAAAATCCTGAGGCGCGCACAGC
GGACAAACTGAATGTGTCTTGTGTCTTGTGTAGAGCGTAGACGTAGAGTC
TCTTTGAATTGTAACACAGGTAGAGAAACCACTCCCTCTTTGTACTAAAA
ACTTCCTATGCATACGTCGTGAGTATTTAGTAGGGTTTGGTCCAAGGTAG
ACATCGATCGTATATGAGTTTTTGTTCTCCCGCCCCTGGTTGGCACTCTG
TACGAGAGTCCTTCAGCAAACGAAAGCTGCCGCTTACACGAACGCATTGC
CACCCATACGGGCCAACTGCATCACGCATGCAGCATGCAGTCAGCACAAC
CAAAACTTAAACTTGGCTGAACGCCTGAACCACTAAGCCATGATGCTTGT
TTCGGGAAAACAAACGCCTTCCCCAACTCTGTGTGACACGCGCGTTTGCC
AACAACGACAGCAGATGTTCAAGTGATGTGCTACAATAATGCCGTCGGAG
AGTTCCCACCATATAACCTTAACCGAAAGTGGTCGTTGTCTCACGCTTCT
AAATACTGCACTTTCTTTCGAAGCGCTCGTTGGTGTGCACGTTTCATGCA
CCATGCACGGACTCTCCTGGATGTCTTACGGACGAATTGGGTCGTCCTTC
TTCCAGCTTCAAACAAGCATCTCTCTACAATCTATTGTGGGCAGTGTCTT
GAACAAGGGGGTTCGCGATTTTCGAAGCGGAAACCAGCAGGCCCGACGAT
TTGCTTTGTAGGCAATAGAAATGGGTTGCTTGTGTAGCGCGAGTAACCAA
CGCTTTTGTACCTGTTCGACGTCGTAAGAGTGGAGGTTGCAGTGACGGTG
AAGATTTGATGGGTGCACCAACGGAGGACGAGCGAACCTGTCAGAACAAA
TGGCACAAGCTGCTCGACCCTTATCTTGACCGGTTTTGGAGCAAAATCTT
CGTTGGCATGGTCAACAACTTTACACGATACAGCCGCACGACTAGGGAAA
AATGGGAACAATGTACGCCGTTGCAAAGAGGCAGGTTTCCAAGCATGGGA
CAGAAAGCGCTCCACAACGTTGTACTAAAAAAATGTCTGAATACGCGCAA
TGATTAATCTGTTCAGGGGGCAGTAGTCGGTGTTCACGGCATCATGTCCG
TCTCTGGCCGAAATCTCGATTTTCAGTACGCGCCTTGAAGCCCACTCTTG
CTTCTGGCTGTGTTGGTGGCACCGCGGTTGCTTGTTCTCTGTTCTTTTGA
GCTTCACGTACTGCTGTTGTTTGGATAATTTTCAAATGACCTCTGTCGTG
AGCCCTGAGGCGTGCCTGCCATGGAAGGCGACGTCCCCTGCCAACACGCG
TTTCGAATATCGCTCCAACTGGAATCACTCTTGCGTGCGAGGTCCACGCC
TCGCACCCAACCAGCCAGTCCTCATGCCACTGCTACCAACGCACGCCCCC
TTGACCTCCTGTCTTGATACGTCGCGCCGCTCTGTCGACCTCATGCGGCC
GGCAGGGAGGGACATGGAAGGCATCAACGGCTCATCCTCTCCCGGTGGGG
AAGGAGCGCGGGGTCAGCTGGACGGCTTGCGGAATGATTCCGACGGAATA
AACACTGCAGCTGCTGCTCGCGCTTCTCCCGCTGTTGCCACCGCTGTTGG
GCGAAGAGAGCGGCGACGCTTGGGCGGCAAGGGCAAGGACAAGAAAAACC
AAGACGGGAAAGAGGACGAGAAGGGAGAAAAGAAGAGGGAGGCAAACAAC
AAGAAAAATAAGGACGATGATCAGAGAGACAAAGGCGCCGGAGAAACGGG
GAACAAGAGTCACGACAGCGACGACGATGGTGATGGCGACGGTAACGGCG
ACGGCGAGGAGGGATCGGGCGGTGAGGACGCGCAGCCCTCCGGTGGCAAC
GACGGTCCCGGGATCGAGGGTTCGGCCGAGGAAGTCGACGAATCAGGGCC
CGGACCCGAAGCAGCGGACGATTTGGGCGAAGTGGAGGTCGACGTCCAGG
TCGAAGCCGAGAACGACGGCCTTGATCGACCCCCGAAAGCCGAGATCGAA
GAGGCCGGGGGAGAAGAGGATGGAGACTCGACCGATGGGGGCGGTGACGT
TGAAAGCGGCTCTAGTAGCGGGAAGAGCGAGGGCATTGGTGCTGCTAATG
CGGCCCAATCGACGGCGTCGTCATCGAACCAACGTGACTCTTCCGGAGGC
TCGCCGGTGGTGGAGGATGCGGGAGCAAGCAACGTCGAGGCGGAAGAGCG
AGAAGATGGAGGGCCAGGAGAAGGAGGAGGAGGAGCGTCACCAGCGGAGC
CAGAAGAGGCGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1491:1204..3767-

>mRNA_Ecto-sp13_S_contig1491.3735.1 ID=mRNA_Ecto-sp13_S_contig1491.3735.1|Name=mRNA_Ecto-sp13_S_contig1491.3735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1491:1204..3767- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTTCGGACGCGGAGGCCACGGCGCCGGGAAAGCGCCTCTCATAGG
CGACGATGGCGCTAAAGGGAGGGACATGGAAGGCATCAACGGCTCATCCT
CTCCCGGTGGGGAAGGAGCGCGGGGTCAGCTGGACGGCTTGCGGAATGAT
TCCGACGGAATAAACACTGCAGCTGCTGCTCGCGCTTCTCCCGCTGTTGC
CACCGCTGTTGGGCGAAGAGAGCGGCGACGCTTGGGCGGCAAGGGCAAGG
ACAAGAAAAACCAAGACGGGAAAGAGGACGAGAAGGGAGAAAAGAAGAGG
GAGGCAAACAACAAGAAAAATAAGGACGATGATCAGAGAGACAAAGGCGC
CGGAGAAACGGGGAACAAGAGTCACGACAGCGACGACGATGGTGATGGCG
ACGGTAACGGCGACGGCGAGGAGGGATCGGGCGGTGAGGACGCGCAGCCC
TCCGGTGGCAACGACGGTCCCGGGATCGAGGGTTCGGCCGAGGAAGTCGA
CGAATCAGGGCCCGGACCCGAAGCAGCGGACGATTTGGGCGAAGTGGAGG
TCGACGTCCAGGTCGAAGCCGAGAACGACGGCCTTGATCGACCCCCGAAA
GCCGAGATCGAAGAGGCCGGGGGAGAAGAGGATGGAGACTCGACCGATGG
GGGCGGTGACGTTGAAAGCGGCTCTAGTAGCGGGAAGAGCGAGGGCATTG
GTGCTGCTAATGCGGCCCAATCGACGGCGTCGTCATCGAACCAACGTGAC
TCTTCCGGAGGCTCGCCGGTGGTGGAGGATGCGGGAGCAAGCAACGTCGA
GGCGGAAGAGCGAGAAGATGGAGGGCCAGGAGAAGGAGGAGGAGGAGCGT
CACCAGCGGAGCCAGAAGAGGCGGGA
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