mRNA_Ecto-sp13_S_contig14904.3731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14904.3731.1
Unique NamemRNA_Ecto-sp13_S_contig14904.3731.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14904.3731.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 1.120e-115
Identity = 168/260 (64.62%), Postives = 198/260 (76.15%), Query Frame = 1 
Query:    1 TLLGTSRHAAEQALIAQFRETP*GKFAEKELRDKGRVLVPLFLSEQDARDKASTMVSSVTKLVENGEGLVKKAMLTNKFNRIKSQDRYMIPPKKLGPDFLSISKEMENTMVYVVWALDPPGYDRILVEKSTCLLSLDRLGAQVLHRDQNLETMNDRLEGRKRAATRGNTRPQPPPYSALCSFQEGTSLRFVDGSHFDHHKEYSAESAVDYPIPRGWGLLWYGLSVHGGAGCTLPWLARLHMYLRMLGCPDAATGKIDLAE 780
            TL G +RHAAEQ  IA+F  TP G+ A K+L   G+V VPLF SEQ+AR K S+M S+V +LVE+ +G VK  ML  ++ RIK QDR MIP   LG DF S+S +ME+T+VYV+WALD PGYDRIL E STCLLSL+ L AQV HRDQ LE + D++ GR +A TRGN+RPQPPPYSALC+ QEGT LR VDGSH D HK Y   SAV+  IPRGWGLLW+GLSVHGG GCT  WLARLH++LR LGCP AATGKIDL +
Sbjct:    7 TLSGAARHAAEQRCIAEFVGTPYGRLARKKLMRDGKVCVPLFASEQEARTKTSSMASAVARLVEDTDGSVKSVMLKRRYTRIKGQDRLMIPLSDLGTDFGSVSGDMEDTLVYVLWALDNPGYDRILAEISTCLLSLEGLLAQVFHRDQVLEKITDQMAGRTQAGTRGNSRPQPPPYSALCAVQEGTILRIVDGSHLDVHKNYEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14904.3731.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 8.150e-78
Identity = 113/155 (72.90%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:  316 MENTMVYVVWALDPPGYDRILVEKSTCLLSLDRLGAQVLHRDQNLETMNDRLEGRKRAATRGNTRPQPPPYSALCSFQEGTSLRFVDGSHFDHHKEYSAESAVDYPIPRGWGLLWYGLSVHGGAGCTLPWLARLHMYLRMLGCPDAATGKIDLAE 780
            ME T+VYV+WALD PGYDRIL E STCLLSL+ L AQVLHRDQ LE + D++ GR +AATRGN+RPQPPPYSALC+FQEGT LR VDGSH D HK Y    AV+  IPRGWGLLW+GLSVHGG GCT  WLARLH++LR LGCP AATGKIDL +
Sbjct:    1 MEETLVYVLWALDNPGYDRILAEISTCLLSLEGLLAQVLHRDQVLEKITDQMAGRTQAATRGNSRPQPPPYSALCAFQEGTILRIVDGSHLDVHKNYEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14904.3731.1 vs. uniprot
Match: A0A6H5L1S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.450e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 TLLGTSRHAAEQALIAQFRETP*GKFAEKELRDKGRVLVPLFLSEQDARDKASTMVSSVTKLVENGEGLVKKAMLTNKFNRI 246
            TLLGT+RH A Q LI  F  TP GK A  +L   G+  VPLFLSEQ A++K  +M+SSV +LVE+  G+VK+AML  K++RI
Sbjct:  100 TLLGTARHTAAQLLIDTFLATPYGKLARLKLLTDGKAFVPLFLSEQQAKEKTKSMLSSVAQLVEDSGGVVKRAMLMKKYDRI 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14904.3731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G604_ECTSI1.120e-11564.62Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G5U5_ECTSI8.150e-7872.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1S8_9PHAE2.450e-1754.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14904contigEcto-sp13_S_contig14904:2485..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons2
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.0778265-CDS-Ecto-sp13_S_contig14904:2484..28501681462795.0778265-CDS-Ecto-sp13_S_contig14904:2484..2850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14904 2485..2850 -
1681462795.0880797-CDS-Ecto-sp13_S_contig14904:2979..32431681462795.0880797-CDS-Ecto-sp13_S_contig14904:2979..3243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14904 2980..3243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.097691-UTR-Ecto-sp13_S_contig14904:3243..34051681462795.097691-UTR-Ecto-sp13_S_contig14904:3243..3405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14904 3244..3405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14904.3731.1prot_Ecto-sp13_S_contig14904.3731.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14904 2485..3243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14904.3731.1

>prot_Ecto-sp13_S_contig14904.3731.1 ID=prot_Ecto-sp13_S_contig14904.3731.1|Name=mRNA_Ecto-sp13_S_contig14904.3731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MVSSVTKLVENGEGLVKKAMLTNKFNRIKSQDRYMIPPKKLGPDFLSISK
EMENTMVYVVWALDPPGYDRILVEKSTCLLSLDRLGAQVLHRDQNLETMN
DRLEGRKRAATRGNTRPQPPPYSALCSFQEGTSLRFVDGSHFDHHKEYSA
ESAVDYPIPRGWGLLWYGLSVHGGAGCTLPWLARLHMYLRMLGCPDAATG
KIDLAEASG*
back to top

mRNA from alignment at Ecto-sp13_S_contig14904:2485..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14904.3731.1 ID=mRNA_Ecto-sp13_S_contig14904.3731.1|Name=mRNA_Ecto-sp13_S_contig14904.3731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14904:2485..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCTACTTGGTACCTCACGACACGCGGCTGAACAAGCGCTAATCGCCCA
GTTTCGGGAAACACCCTAAGGGAAATTCGCAGAAAAGGAGCTCCGTGACA
AAGGGAGGGTGTTGGTCCCTCTGTTCCTTTCAGAACAGGATGCCCGCGAC
AAAGCATCAACAATGGTCTCGAGCGTGACAAAGCTTGTGGAAAACGGGGA
AGGACTCGTAAAGAAGGCAATGTTGACGAATAAGTTCAACAGAATCAAGA
GCCAGGATAGGTATATGATTCCACCGAAGAAGCTGGGCCCTGACTTTCTT
TCCATCTCAAAGGAAATGGAGAATACGATGGTGTACGTGGTGTGGGCCCT
TGACCCACCGGGGTATGACCGCATCTTGGTGGAGAAGAGCACCTGCTTGC
TCAGCTTGGACAGACTCGGTGCACAGGTGAGCTAGGTAGCCGTTTGGTAC
GGGTGCGCGGCGGACGGTGTTCACGCGTGGTCTCCCAAGTAAACTTCATT
GTCGCTATTTCATAATGTTCCTTTGATCCGCACCAACTCTCCGAAATTAC
GGCAGGTTTTACATCGGGATCAAAATCTCGAGACGATGAACGATCGACTG
GAGGGCAGAAAGAGGGCAGCGACTCGTGGAAACACTCGACCGCAACCACC
GCCGTATTCCGCGCTCTGCTCCTTTCAAGAGGGGACCAGCCTTCGGTTTG
TGGACGGGAGTCACTTTGACCATCACAAGGAGTATTCGGCGGAGAGTGCC
GTCGACTACCCCATTCCGCGCGGATGGGGATTACTTTGGTATGGCTTGTC
CGTTCACGGCGGCGCCGGTTGCACACTCCCGTGGCTAGCTCGACTTCACA
TGTACCTAAGAATGCTCGGTTGCCCGGATGCAGCTACCGGGAAAATTGAC
TTGGCCGAGGCTTCGGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14904:2485..3405-

>mRNA_Ecto-sp13_S_contig14904.3731.1 ID=mRNA_Ecto-sp13_S_contig14904.3731.1|Name=mRNA_Ecto-sp13_S_contig14904.3731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14904:2485..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTCGAGCGTGACAAAGCTTGTGGAAAACGGGGAAGGACTCGTAAA
GAAGGCAATGTTGACGAATAAGTTCAACAGAATCAAGAGCCAGGATAGGT
ATATGATTCCACCGAAGAAGCTGGGCCCTGACTTTCTTTCCATCTCAAAG
GAAATGGAGAATACGATGGTGTACGTGGTGTGGGCCCTTGACCCACCGGG
GTATGACCGCATCTTGGTGGAGAAGAGCACCTGCTTGCTCAGCTTGGACA
GACTCGGTGCACAGGTTTTACATCGGGATCAAAATCTCGAGACGATGAAC
GATCGACTGGAGGGCAGAAAGAGGGCAGCGACTCGTGGAAACACTCGACC
GCAACCACCGCCGTATTCCGCGCTCTGCTCCTTTCAAGAGGGGACCAGCC
TTCGGTTTGTGGACGGGAGTCACTTTGACCATCACAAGGAGTATTCGGCG
GAGAGTGCCGTCGACTACCCCATTCCGCGCGGATGGGGATTACTTTGGTA
TGGCTTGTCCGTTCACGGCGGCGCCGGTTGCACACTCCCGTGGCTAGCTC
GACTTCACATGTACCTAAGAATGCTCGGTTGCCCGGATGCAGCTACCGGG
AAAATTGACTTGGCCGAGGCTTCGGGGTGA
back to top