mRNA_Ecto-sp13_S_contig1488.3715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1488.3715.1
Unique NamemRNA_Ecto-sp13_S_contig1488.3715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1488.3715.1 vs. uniprot
Match: D8LJ93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ93_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 3.680e-151
Identity = 262/325 (80.62%), Postives = 269/325 (82.77%), Query Frame = 1 
Query:   16 MGAAGSVGAVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQSEAEDKPKTKEAAPNVEGTGRSSVRCSSTAASEVNSAAAGGPKARRGSGGIAASGVEGRTAGSTARRGSASRPLSHNSRLSYSSSSTQASQQSRRVSNARRSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGEDAVGAAAAVAVDXXXXXXXAAPAQDEPAQD-----VQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGPNPPPEPTMDSITIYSGSKLFWRTGLNVEMFMQQHKTANNVVQ 975
            MGAAGSVG VDP ALRKEYEAMAA+DVGDEELLNHMKKLIISP++EA DKPKTKE APNVEGT RSSVR +S  A  V+SAA  GPKARRGSGGIAASGVEG  AGSTARRG ASRPLSHNSR                     RSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQG  AVGAAAA    XXXXXXX APAQDE         V+D+K DSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSP HAPPAEG NPPPEPTMDSITIYSGSKLFWRT LNVEMFMQQHKTANNVVQ
Sbjct:    1 MGAAGSVGVVDPTALRKEYEAMAAQDVGDEELLNHMKKLIISPKTEAADKPKTKETAPNVEGTRRSSVRRNSGPAPGVDSAAVAGPKARRGSGGIAASGVEGGAAGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXXRSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGVAVGAAAAXXXXXXXXXXXXAPAQDEXXXXXXXXXVEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTANNVVQ 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1488.3715.1 vs. uniprot
Match: A0A6H5K5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G4_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 4.270e-111
Identity = 205/327 (62.69%), Postives = 207/327 (63.30%), Query Frame = 1 
Query:   16 MGAAGSVGAVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQSEAEDKPKTKEAAPNVEGTGRSSVRCSSTAASEVNSAAAGGPKARRGSGGIAASGVEGRTAGSTARRGSASRPLSHNSRLSYSSSSTQASQQSRRVSNARRSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGEDAVGAAAAVAVDXXXXXXXAAPAQDEPAQ-----DVQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGPNPPPEPTMDSITIYSGSKLFWRTGLNVEMFMQQHKTANNVVQAS 981
            MGAAGSVG VDPA LRKEYEAMAAK+VGDEELLNHMKKLIISPQS                                                                                            RR SNARRSSVD DRPLSAPQTKPPVPKQRPRSSLGE+NDGSGKPTKSRRRSYLGQP    G DAVGAAAAVAVD       AAPAQDE        DVQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEG NPPPEPTMDSITIYSGSKLFWRT LNVEMFMQQHKTANNVV  S
Sbjct:    1 MGAAGSVGVVDPAVLRKEYEAMAAKEVGDEELLNHMKKLIISPQSGQ------------------------------------------------------------------------------------------RRASNARRSSVDSDRPLSAPQTKPPVPKQRPRSSLGEENDGSGKPTKSRRRSYLGQP----GGDAVGAAAAVAVDASAAVDGAAPAQDEXXXXXXXXDVQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTANNVVWVS 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1488.3715.1 vs. uniprot
Match: A0A7S3H489_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H489_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.120e-6
Identity = 32/97 (32.99%), Postives = 45/97 (46.39%), Query Frame = 1 
Query:  724 DSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGPNPPPEPTMDSIT---------------------IYSGSKLFWRTGLNVEMFMQQH 951
            DSW+SV+ QP C  C M F ++   D+H+K+S  HA   E          + IT                     +Y+GSK FWRT +N+E+ M  H
Sbjct:  143 DSWDSVTHQPFCTTCQMAFKSQDFLDRHVKFSDLHAKNLEKAKGVIAVDKNPITSTDAGVGMVQQSQVEGVHYKLLYTGSKFFWRTQMNIEIDMYLH 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1488.3715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ93_ECTSI3.680e-15180.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5G4_9PHAE4.270e-11162.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H489_9STRA7.120e-632.99Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1488contigEcto-sp13_S_contig1488:14141..16655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size990
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005240.1
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1488.3715.1prot_Ecto-sp13_S_contig1488.3715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1488 14156..16655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.7534084-UTR-Ecto-sp13_S_contig1488:14140..141551681462793.7534084-UTR-Ecto-sp13_S_contig1488:14140..14155Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1488 14141..14155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.7623565-CDS-Ecto-sp13_S_contig1488:14155..142911681462793.7623565-CDS-Ecto-sp13_S_contig1488:14155..14291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1488 14156..14291 +
1681462793.770561-CDS-Ecto-sp13_S_contig1488:14804..150781681462793.770561-CDS-Ecto-sp13_S_contig1488:14804..15078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1488 14805..15078 +
1681462793.778653-CDS-Ecto-sp13_S_contig1488:15606..157781681462793.778653-CDS-Ecto-sp13_S_contig1488:15606..15778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1488 15607..15778 +
1681462793.7867177-CDS-Ecto-sp13_S_contig1488:15969..161301681462793.7867177-CDS-Ecto-sp13_S_contig1488:15969..16130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1488 15970..16130 +
1681462793.7946806-CDS-Ecto-sp13_S_contig1488:16423..166551681462793.7946806-CDS-Ecto-sp13_S_contig1488:16423..16655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1488 16424..16655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1488.3715.1

>prot_Ecto-sp13_S_contig1488.3715.1 ID=prot_Ecto-sp13_S_contig1488.3715.1|Name=mRNA_Ecto-sp13_S_contig1488.3715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MGAAGSVGAVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQSEAEDK
PKTKEAAPNVEGTGRSSVRCSSTAASEVNSAAAGGPKARRGSGGIAASGV
EGRTAGSTARRGSASRPLSHNSRLSYSSSSTQASQQSRRVSNARRSSVDG
DRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGE
DAVGAAAAVAVDAAAAVDGAAPAQDEPAQDVQDIKTDSWESVSQQPSCPL
CHMVFSTEGKRDQHIKYSPAHAPPAEGPNPPPEPTMDSITIYSGSKLFWR
TGLNVEMFMQQHKTANNVVQASGC*
back to top

mRNA from alignment at Ecto-sp13_S_contig1488:14141..16655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1488.3715.1 ID=mRNA_Ecto-sp13_S_contig1488.3715.1|Name=mRNA_Ecto-sp13_S_contig1488.3715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1488:14141..16655+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTGTGGGAGGACGATGGGAGCCGCGGGGTCTGTCGGTGCCGTCGACCC
CGCAGCCCTGCGAAAAGAGTATGAGGCTATGGCGGCTAAGGACGTCGGGG
ACGAGGAACTCCTTAATCACATGAAGAAGCTCATTATCTCTCCGCAATCA
GGTGGGTGCATTGGGCAGCATTTTCCTGCGGTCGTCTACGGCATAGCAGT
CGGTCTCGCAATGCAAGTGCACGAGGCATCGTCAAGTATTTGAATCCCCG
CACAAGATTGATCATGGTCGTAGCGGCTAGCCTCCGTGCAACTGCGCCCT
TCTTCTCCACCACAGCCTCCAACCATCCTTTGCAAGAACCGCGTTGCACT
CTGCGCCGTGAACGACAACAAAAAGGTGTGTCGTTTAGACTTTTTGGTGG
GCGTACCACTCGGTGCTGTCTCTTGTTCTTGTCGAATTGAAGCGTCGTTT
GTGCCGGCCTTACAAGCTGAAGGAAGAGCATCACATGGTACAGGTTGTTG
TGATGCTGAGTGCGTTCCACAAGGTGTGAGTCTTGCATTCTCCGCCTTGC
CCGATTTCATGGCTGGCTAGATTATGTATGAACGCTCAGATTATCGCCTA
GCAACAACACGACGCCGCAGCAATTAGTTCCATCTCCCTTTTTGTTCTCG
ATTCGGGATAACAGAAGCGGAAGACAAGCCGAAGACAAAGGAAGCAGCGC
CCAATGTCGAGGGCACCGGACGATCATCAGTGAGGTGCAGCTCCACAGCG
GCATCCGAGGTCAACAGCGCAGCAGCGGGAGGACCAAAAGCCAGGCGTGG
CTCTGGAGGAATCGCTGCGTCCGGTGTCGAAGGGCGCACGGCGGGGAGCA
CTGCGAGGCGTGGCTCGGCATCCAGACCTCTCTCGCACAATAGTCGACTC
TCTTATAGTAGTAGCAGCACGCAGGCTTCGCAGCAAAGGTATCGATTTGG
TCTTTGCCTCGACTGTTTTATCAAAATATTCTGAAATTGTTTGAATGTAG
TGAACTTCAACGAATCAAGACAACGCAGGATGTACGCGTACACACATGAA
TAAGACAGGACGACACAAATAGGCCAGAGGCAGGTGTCCTCGTAGTATTT
AGATCACTATGTTTGGGAGCCAAGATTCCACAACATGCAAGCACTGCGCG
CTGTCGGCCTCTCACGTTTCTGCCGTCGTAAACTACCGACTCCGCAGAGA
GTACACTTCTAGGGAGGTCGGGAGGCGCGTTTCGTGAGGCAAACCTCACT
GCGAAGTTGCCCCACAACGAGGGAAGAAAACACGACGGCGACAATCTTTT
GTTGGACGATTGACGAAATAATGCCCCAGAAGAAGCCGTGTTAGAAGCTC
CTTATCATCTCTCCGCGGTGGAAAGCGACGAACGTCTGCAGTTGGCTTTT
CCCCTTCCCTAAAAAGACATTTCCAACGTGACGCGTATTCTCAGAGTTTC
TTCCTGATGTCCGCAGCAGGCGTGTTTCAAACGCTCGTCGCTCGAGCGTA
GACGGCGACCGACCCCTGTCAGCGCCCCAGACAAAGCCGCCGGTCCCTAA
GCAGCGGCCTCGTAGCTCGCTCGGGGAGAAGAACGACGGAAGCGGCAAGC
CGACCAAGTCTAGGAGAAGATCATACCTCGGGCAGCCGGTAAAACCATCT
TACACTATCCCATACGTCTATATTTACGCACTCATGGCAGCTGTCTCCTC
AAGTCTCCTCGAAACATTCAACATACTGAAGGGTAGAAATCTATTTTGAG
ACCCATGTACAAGCGTTTTACAGACGATCACTTTTCATGATTATTCTGTT
TGTTGCTGATGGGTGTGCATGCCATTCAGACTGCTGGACAGGGTGAGGAT
GCCGTGGGCGCCGCTGCGGCGGTTGCAGTCGATGCGGCGGCTGCTGTTGA
CGGTGCTGCGCCAGCTCAGGACGAGCCAGCTCAAGACGTCCAGGATATCA
AGACAGACAGCTGGGAATCGGTCTCGCAACAGCCTTCGTGGTGAGTCCCA
TCCCATCCACAGAGGATATCGAATATAGAGTGAATGTATTATGAGGGAGT
GGATGTTGGCAAATTATCAAAGTGTCGCTGGGTTTGGCCACTGTTGTACC
ACTATGTACAAATGCTTAGGTCTTATCTTTTAGGTGGTGGCGGTGTGACT
GTATCCGGGCTCGGCTGAATAACGAGCGTGTACAGTCTGTCACTCCTGGC
CTTTAAATAGTTGTTCTCCCCTTGGAAAATTATCTGAAGTGAATTTGTCG
ATGCTCCGTTGCGTGTCCACGTCGCGCGCACAGCCCACTCTGCCACATGG
TTTTCTCGACGGAAGGAAAGAGGGACCAGCATATTAAGTACTCCCCGGCG
CACGCTCCCCCAGCAGAGGGTCCAAATCCTCCGCCCGAGCCCACCATGGA
CAGCATAACAATCTATTCCGGCTCGAAGCTTTTCTGGCGCACTGGGCTGA
ACGTGGAGATGTTCATGCAGCAGCACAAAACGGCCAACAACGTTGTTCAA
GCAAGTGGATGTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1488:14141..16655+

>mRNA_Ecto-sp13_S_contig1488.3715.1 ID=mRNA_Ecto-sp13_S_contig1488.3715.1|Name=mRNA_Ecto-sp13_S_contig1488.3715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1488:14141..16655+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCCGCGGGGTCTGTCGGTGCCGTCGACCCCGCAGCCCTGCGAAA
AGAGTATGAGGCTATGGCGGCTAAGGACGTCGGGGACGAGGAACTCCTTA
ATCACATGAAGAAGCTCATTATCTCTCCGCAATCAGAAGCGGAAGACAAG
CCGAAGACAAAGGAAGCAGCGCCCAATGTCGAGGGCACCGGACGATCATC
AGTGAGGTGCAGCTCCACAGCGGCATCCGAGGTCAACAGCGCAGCAGCGG
GAGGACCAAAAGCCAGGCGTGGCTCTGGAGGAATCGCTGCGTCCGGTGTC
GAAGGGCGCACGGCGGGGAGCACTGCGAGGCGTGGCTCGGCATCCAGACC
TCTCTCGCACAATAGTCGACTCTCTTATAGTAGTAGCAGCACGCAGGCTT
CGCAGCAAAGCAGGCGTGTTTCAAACGCTCGTCGCTCGAGCGTAGACGGC
GACCGACCCCTGTCAGCGCCCCAGACAAAGCCGCCGGTCCCTAAGCAGCG
GCCTCGTAGCTCGCTCGGGGAGAAGAACGACGGAAGCGGCAAGCCGACCA
AGTCTAGGAGAAGATCATACCTCGGGCAGCCGACTGCTGGACAGGGTGAG
GATGCCGTGGGCGCCGCTGCGGCGGTTGCAGTCGATGCGGCGGCTGCTGT
TGACGGTGCTGCGCCAGCTCAGGACGAGCCAGCTCAAGACGTCCAGGATA
TCAAGACAGACAGCTGGGAATCGGTCTCGCAACAGCCTTCGTGCCCACTC
TGCCACATGGTTTTCTCGACGGAAGGAAAGAGGGACCAGCATATTAAGTA
CTCCCCGGCGCACGCTCCCCCAGCAGAGGGTCCAAATCCTCCGCCCGAGC
CCACCATGGACAGCATAACAATCTATTCCGGCTCGAAGCTTTTCTGGCGC
ACTGGGCTGAACGTGGAGATGTTCATGCAGCAGCACAAAACGGCCAACAA
CGTTGTTCAAGCAAGTGGATGTTAA
back to top