mRNA_Ecto-sp13_S_contig14871.3707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14871.3707.1
Unique NamemRNA_Ecto-sp13_S_contig14871.3707.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 1.290e-128
Identity = 206/220 (93.64%), Postives = 210/220 (95.45%), Query Frame = 1
Query:    1 QEDVAVSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRREGGFEDGGLQFEHKCLAFVGLSVALYLVGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 660
            QEDVAVSSGVGLP SDRGYEI NFRQNQETVRGEAII QYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAG L WCHAVFRR+GGFEDGG QFEHKCLAFVGLSVALYLVG+LRGA GSASWGLASEMLRSLA AVF+VAALCMADGI RR VDDRFT+AIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH
Sbjct:  816 QEDVAVSSGVGLPSSDRGYEIFNFRQNQETVRGEAIIHQYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGCLWWCHAVFRRQGGFEDGGPQFEHKCLAFVGLSVALYLVGNLRGAPGSASWGLASEMLRSLAAAVFLVAALCMADGISRRGVDDRFTIAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 1035          
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 2.720e-123
Identity = 202/221 (91.40%), Postives = 209/221 (94.57%), Query Frame = 1
Query:    1 QEDVAVSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRR-EGGFEDGGLQFEHKCLAFVGLSVALYLVGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 660
            QEDV+VSSGVGLPLSDRGYEI NFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSE DFSGLTTARWTLTYETRGAGRGSGVA+ACALGLWV GWL+WCHAVFRR EGGFEDGG  FEHKCLAF GLSVALYLVG LRGA GSASWGLASEM+RSLA AVF+VAALCMADGI RR VD+RFT+AIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH
Sbjct:  570 QEDVSVSSGVGLPLSDRGYEIFNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTSSEADFSGLTTARWTLTYETRGAGRGSGVAMACALGLWVVGWLSWCHAVFRRREGGFEDGGPHFEHKCLAFAGLSVALYLVGSLRGAPGSASWGLASEMMRSLAAAVFLVAALCMADGIPRRSVDNRFTIAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 790          
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.900e-46
Identity = 115/233 (49.36%), Postives = 146/233 (62.66%), Query Frame = 1
Query:    1 QEDVAVSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSST------STSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRR--EGGFEDGGLQFEHKCLAFVGLSVALYL-----VGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 660
            QED+  S+ V     +RGY + NF QNQET+RG+A+++QYRV VGFVS+T+        S S+E  FS L+ ARW+L YET      + + +A  L  WV  WLAWC  VF +  EGGF++     E K LAF+GL+VALYL     VG+   A GSASWGLASEM  S+AVAVF+V ALC+ADG+ +  V      ++  FY PKV  GV  L  MLLVDL  FP+L G D 
Sbjct:  438 QEDI--SARVRSLPENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTTXXXXXXXXSGSTEEPFS-LSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEGGFKNA--LHERKWLAFMGLAVALYLNPIMVVGNFV-APGSASWGLASEMSLSVAVAVFLVVALCIADGVAKDRVGGGAGGSLG-FYVPKVVFGVLTLALMLLVDLTSFPTLTGMDR 663          
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.400e-42
Identity = 110/224 (49.11%), Postives = 138/224 (61.61%), Query Frame = 1
Query:   28 VGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTSTS------SEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRR--EGGFEDGGLQFEHKCLAFVGLSVALYL-----VGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 660
            V LP  +RGY + NF QNQET+RG+A+++QYRV VGFVS+T            +E  FS L+ ARW+L YET      + + +A  L  WV  WLAWC  VF +  EGGF++     E K LAF+GL+VALYL     VG+   A GSASWGLASEM  S+AVAVF+V ALC+ADG+ +  V      ++  FY PKV  GV  L  MLLVDL  FP+L   D 
Sbjct:  612 VLLP-ENRGYTMFNFYQNQETIRGQALVRQYRVQVGFVSSTXXXXXXXXXXXXTEEPFS-LSEARWSLEYETGATEEWAKIVLAVVLVCWVPVWLAWCWTVFYKNGEGGFKNA--LHERKWLAFMGLAVALYLNPIMVVGNFV-APGSASWGLASEMSLSVAVAVFLVVALCIADGVGKDRVGGGAGGSLG-FYVPKVVFGVLTLALMLLVDLTSFPTLTAMDR 829          
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.410e-39
Identity = 103/228 (45.18%), Postives = 136/228 (59.65%), Query Frame = 1
Query:   16 VSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTST------SSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRR--EGGFEDGGLQFEHKCLAFVGLSVALYL-----VGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAALMFMLLVDLALFPSLAGWDH 660
            +S+ V     +R Y + NF QNQ+T+RG+A+++QYRV V FVSTT+S+S+      S+E  FS +  ARW+L YET      + + +A  L  W+  WLAWC AVF R  EGGF++     E + L  +GLSV LYL     VG+   A GSASWGLASEM  S+A A+ +V  LC+ADG+ R    DR       FY  KV  GV  +  MLLVD A FP++ G D 
Sbjct:  133 ISARVRSLPENRAYALFNFHQNQDTIRGQALVRQYRVQVDFVSTTTSSSSTGDSSGSAERSFSWVREARWSLEYETGATTEWAKIILAVVLLCWLPVWLAWCWAVFYRSAEGGFKNA--LHERRWLELIGLSVVLYLNPIKVVGNFV-APGSASWGLASEMSLSVAEAMLLVVTLCIADGVGR----DRVGGGSLGFYLLKVVFGVWTMACMLLVDRASFPTVIGIDR 353          
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.460e-31
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 1
Query:   16 VSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTTSSTST------SSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAWCHAVFRR--EGGFEDGGLQFEHKCLAFVGLSVALYL-----VGHLRGASGSASWGLASEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVA 585
            +S+ V     +RGY + NF QNQ+T+ G+A+++QYRV VGFVSTT+S+S+      S+E  FS ++ A+W+L YET      +   +A  L  WV  WLAWC  VF +  E GF++     E K LA +GLSV  YL     VG+      SASWGLASEM  S+AV +F+V  LC+A G+ R  V       +  FY PK A
Sbjct:  373 ISARVRSLPENRGYTLFNFYQNQDTIWGQALVRQYRVQVGFVSTTASSSSTGGSSGSAEESFSWVSEAKWSLEYETGATTEWAKSVLAVVLMCWVPVWLAWCWTVFYKTSEKGFKNA--LHERKWLASLGLSVVFYLNPIKVVGNFAFPE-SASWGLASEMCFSVAVVMFLVVGLCIAGGVSRDWVGG----GLLGFYVPKAA 568          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14871.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JIC3_9PHAE1.290e-12893.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRA0_ECTSI2.720e-12391.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEN2_ECTSI5.900e-4649.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE1.400e-4249.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI2.410e-3945.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U2_ECTSI3.460e-3143.35Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14871contigEcto-sp13_S_contig14871:1575..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score172.6
Seed ortholog evalue2.1e-40
Seed eggNOG ortholog2880.D8LEN2
Model size662
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Cds size660
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.1369705-CDS-Ecto-sp13_S_contig14871:1576..16571681462793.1369705-CDS-Ecto-sp13_S_contig14871:1576..1657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14871 1577..1657 -
1681462793.1514027-CDS-Ecto-sp13_S_contig14871:1987..22301681462793.1514027-CDS-Ecto-sp13_S_contig14871:1987..2230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14871 1988..2230 -
1681462793.1713188-CDS-Ecto-sp13_S_contig14871:2687..28941681462793.1713188-CDS-Ecto-sp13_S_contig14871:2687..2894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14871 2688..2894 -
1681462793.185673-CDS-Ecto-sp13_S_contig14871:3397..35261681462793.185673-CDS-Ecto-sp13_S_contig14871:3397..3526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14871 3398..3526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14871.3707.1prot_Ecto-sp13_S_contig14871.3707.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14871 1577..3526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14871.3707.1

>prot_Ecto-sp13_S_contig14871.3707.1 ID=prot_Ecto-sp13_S_contig14871.3707.1|Name=mRNA_Ecto-sp13_S_contig14871.3707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
QEDVAVSSGVGLPLSDRGYEISNFRQNQETVRGEAIIQQYRVLVGFVSTT
SSTSTSSEVDFSGLTTARWTLTYETRGAGRGSGVAVACALGLWVAGWLAW
CHAVFRREGGFEDGGLQFEHKCLAFVGLSVALYLVGHLRGASGSASWGLA
SEMLRSLAVAVFMVAALCMADGILRRDVDDRFTMAIARFYAPKVALGVAA
LMFMLLVDLALFPSLAGWDH
back to top

mRNA from alignment at Ecto-sp13_S_contig14871:1575..3526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14871.3707.1 ID=mRNA_Ecto-sp13_S_contig14871.3707.1|Name=mRNA_Ecto-sp13_S_contig14871.3707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1952bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14871:1575..3526- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGACGTGGCTGTTTCCTCGGGGGTGGGCCTGCCGTTGTCCGACAG GGGTTACGAGATCTCCAACTTTCGCCAAAATCAGGAGACTGTCCGGGGAG AGGCGATCATCCAGCAGTATCGCGTGCTGGTATGTGTTCTCTGTTGGTGT ACGGAACGCCGTGGCGGATTTTTTGCTGCGTTTGCGTGCCGTTGGGTGAT GGGGGGGTAGGGGTCGATAAACGAGTCCCCTCCCTGGGGTTTGTCGTTGA GACGGGCGCTTCGCTCGGCGCAGCTCGGCGTGAGGTTTTCGGCCCTCGCA TGGACTTCTCCGTTCTGCTACAGAAGGCCATACCCAATCACTCAAACACG CCTTTTTCGTAACAAAAGTGGTTTGTGCAGTCTACATACCACATCGCAGC AGATCGTGGCCCATGGTCCGAACCACAAGAACGGTTGTATCAACCGAGAT AAACGCGGAAACAATACAACTGGAAACGTGACCGCTGGATCCCCGCGGGG ACCGCATGTGGGGGCGCTGTTATGGTAGGGCTCCTAGGCGTCGTATTGTT AGCAATTTTCACAACCCCCCCCCCACCGTCCGAAACTCCGCAATGTTGCG CACCTCTCTCACTCGCCTCTGCTACAAACCAGGTGGGCTTCGTGTCCACC ACCTCTAGCACCAGCACCAGCAGCGAGGTAGACTTTTCCGGGCTGACCAC GGCGCGGTGGACGCTGACGTACGAGACGAGGGGCGCCGGGCGAGGGTCGG GGGTGGCCGTGGCGTGCGCGCTGGGTCTGTGGGTGGCGGGGTGGCTGGCG TGGTGCCACGCCGTGTTTCGCCGCGAAGGAGGCTTTGAGGTATGTATGCT ATCGAGAGCCCTACCACCGCCCGCCCCGCACGGCTGCCGTGCCTCGACGA GGGGTAGACACCCGCAGGAGGCCACAAACCTGCAACTCGATGCTATTTGT TGCACGGATGTTGCGCTGTTGTATCGGGAGCTCCCCCGTTCCTTGGTACG GCTGTATGGCTGCCCATCCTTACCTCCCGGTATTTTGGTCACACGCGGCG ATGGGAGGTTGGGTTTGGTTCACCAAGTTGTCCACGCCCTTGGTCATTCT GTCTAATGTACGCGTTCGGAATCTGTTTCCACGCCTGTGTTTTGGTACAC TGCTGATCCTTGACCGGGTTGTACATGCATCATCTCTCTCTCTCTCTTTC CCCTTGTCTCCATTTGTCTCTGTCTCTTGCTGTCTGTCTCTCCCTCTCGT GGTACAATATTACCTCAAACGAACCAACATGGCACTCCGAAATCAGGACG GCGGACTTCAGTTCGAACACAAGTGCCTGGCTTTCGTAGGGTTGTCGGTG GCCCTCTACCTGGTCGGTCACCTCCGCGGGGCCTCCGGCTCGGCGTCGTG GGGCCTGGCGAGCGAGATGCTGCGCAGCCTGGCCGTGGCGGTGTTTATGG TGGCGGCGCTCTGCATGGCAGACGGCATCTTGCGGCGCGACGTGGACGAT AGGTTCACCATGGCGATCGCCCGATTTTACGCCCCCAAGGTGCGCTTCGT GATACACTTCTGCTGTGTATTCGGGAGAGGCGGCAGGGGCTTTGGTCGCG GTGTTGAAGTGTTTCCGGCGGGCAGCTTTTATCCGTCATGACTCTGTATG TCATATGGCGGCCTCCCATCGCGACCGGGGCTCGACCGCGGATCCCGAGG TACTGTAGGCACAAGCTTGCGACCGCATGTGCGCGTCGTCTTGCACCTTC CGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCC ACCTCGCGCGCGCGCGCGCCCCCCCTCCGACTATCGGCTGCTTTCGTTCA CCCCCATGCCATGTCAAAGGTGGCACTTGGCGTGGCGGCACTGATGTTCA TGCTGCTGGTCGACCTGGCGTTGTTCCCCAGTCTAGCGGGGTGGGATCAC GG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14871:1575..3526-

>mRNA_Ecto-sp13_S_contig14871.3707.1 ID=mRNA_Ecto-sp13_S_contig14871.3707.1|Name=mRNA_Ecto-sp13_S_contig14871.3707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14871:1575..3526- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGACGTGGCTGTTTCCTCGGGGGTGGGCCTGCCGTTGTCCGACAG
GGGTTACGAGATCTCCAACTTTCGCCAAAATCAGGAGACTGTCCGGGGAG
AGGCGATCATCCAGCAGTATCGCGTGCTGGTGGGCTTCGTGTCCACCACC
TCTAGCACCAGCACCAGCAGCGAGGTAGACTTTTCCGGGCTGACCACGGC
GCGGTGGACGCTGACGTACGAGACGAGGGGCGCCGGGCGAGGGTCGGGGG
TGGCCGTGGCGTGCGCGCTGGGTCTGTGGGTGGCGGGGTGGCTGGCGTGG
TGCCACGCCGTGTTTCGCCGCGAAGGAGGCTTTGAGGACGGCGGACTTCA
GTTCGAACACAAGTGCCTGGCTTTCGTAGGGTTGTCGGTGGCCCTCTACC
TGGTCGGTCACCTCCGCGGGGCCTCCGGCTCGGCGTCGTGGGGCCTGGCG
AGCGAGATGCTGCGCAGCCTGGCCGTGGCGGTGTTTATGGTGGCGGCGCT
CTGCATGGCAGACGGCATCTTGCGGCGCGACGTGGACGATAGGTTCACCA
TGGCGATCGCCCGATTTTACGCCCCCAAGGTGGCACTTGGCGTGGCGGCA
CTGATGTTCATGCTGCTGGTCGACCTGGCGTTGTTCCCCAGTCTAGCGGG
GTGGGATCAC
back to top