mRNA_Ecto-sp13_S_contig14843.3695.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14843.3695.1
Unique NamemRNA_Ecto-sp13_S_contig14843.3695.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14843.3695.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.130e-37
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 2 
Query:  254 VTEMQELIEVTPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGGNGGVRATNLRRTSSTDSSR 484
            VTEMQ LIE TPVPARVADRLVRKIVHDWVFRSDERITGG FQSPSSSGEYGNGTGGGNGGV ATNLRRTSSTDSSR
Sbjct:  210 VTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSR 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14843.3695.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.850e-27
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 2 
Query:  272 LIEVTPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGGNGGVRATNLRRTSSTDSSR 484
            LIE  PVPARVA RLVRKIVH+WVFRSDERITGGV QSPSSSGEYG+GTGGGNGGV   + RRT  TDSSR
Sbjct:  134 LIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSR 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14843.3695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L574_9PHAE1.130e-3794.81PKD_channel domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JES1_9PHAE9.850e-2781.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14843contigEcto-sp13_S_contig14843:366..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size485
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.2140875-UTR-Ecto-sp13_S_contig14843:365..4861681462792.2140875-UTR-Ecto-sp13_S_contig14843:365..486Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14843 366..486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.2227015-CDS-Ecto-sp13_S_contig14843:486..8491681462792.2227015-CDS-Ecto-sp13_S_contig14843:486..849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14843 487..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14843.3695.1prot_Ecto-sp13_S_contig14843.3695.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14843 487..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14843.3695.1

>prot_Ecto-sp13_S_contig14843.3695.1 ID=prot_Ecto-sp13_S_contig14843.3695.1|Name=mRNA_Ecto-sp13_S_contig14843.3695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MPPTTYLSKPGYSTRLPTKDGSTTTSFPIAHPNHVYRAYVTRTKVTEMQE
LIEVTPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTG
GGNGGVRATNLRRTSSTDSSR
back to top

mRNA from alignment at Ecto-sp13_S_contig14843:366..849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14843.3695.1 ID=mRNA_Ecto-sp13_S_contig14843.3695.1|Name=mRNA_Ecto-sp13_S_contig14843.3695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14843:366..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAGTTTGTTGCTGTACCTGTGCTAGTGTTATGGTTTACCAGTCTTGAA
ATTCAGCTCTTAGCAGCGGTTGTGCACCCTTATGCGCGTCTACCACTGAT
TGGTTTGCGATTCTGCCCGCCATGCCACCAACGACCTACCTGAGTAAGCC
AGGATATTCAACACGTCTGCCCACCAAAGACGGCTCGACTACCACTTCCT
TCCCAATAGCACATCCCAATCATGTGTACCGCGCGTATGTTACCCGCACC
AAGGTGACCGAAATGCAGGAACTGATCGAAGTCACTCCGGTCCCGGCTCG
CGTGGCCGACCGGCTGGTGAGAAAGATCGTCCACGATTGGGTTTTCCGAA
GCGACGAAAGGATCACCGGAGGCGTGTTCCAGTCGCCGTCTTCCTCGGGA
GAGTACGGCAACGGCACCGGTGGCGGCAACGGCGGCGTCAGGGCAACGAA
CCTCAGGAGAACGTCCAGTACTGACTCGTCACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14843:366..849+

>mRNA_Ecto-sp13_S_contig14843.3695.1 ID=mRNA_Ecto-sp13_S_contig14843.3695.1|Name=mRNA_Ecto-sp13_S_contig14843.3695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14843:366..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCAACGACCTACCTGAGTAAGCCAGGATATTCAACACGTCTGCC
CACCAAAGACGGCTCGACTACCACTTCCTTCCCAATAGCACATCCCAATC
ATGTGTACCGCGCGTATGTTACCCGCACCAAGGTGACCGAAATGCAGGAA
CTGATCGAAGTCACTCCGGTCCCGGCTCGCGTGGCCGACCGGCTGGTGAG
AAAGATCGTCCACGATTGGGTTTTCCGAAGCGACGAAAGGATCACCGGAG
GCGTGTTCCAGTCGCCGTCTTCCTCGGGAGAGTACGGCAACGGCACCGGT
GGCGGCAACGGCGGCGTCAGGGCAACGAACCTCAGGAGAACGTCCAGTAC
TGACTCGTCACGG
back to top