mRNA_Ecto-sp13_S_contig1474.3624.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1474.3624.1
Unique NamemRNA_Ecto-sp13_S_contig1474.3624.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1474.3624.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 1.180e-99
Identity = 156/188 (82.98%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:    1 MIQEGAGAAALERGEEGSLIAGTEPRRKGWVAPALAAVVGVALLLVCGLSAN-AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCXXXXXXXXXXXXXXXXXXXXXXADTLENTGVDDLPRRCLECDETQCSTLAGHPSQACGSAAPFMCLSGAATWGCADNELAWA 561
            MIQ GAGAAALERGEEGSLIAGTEPRRKGWV PALAA VGVALLL CGLSA+ AREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGC                      ADTLENTGVDDLPRRCLECDETQCS LAGHPSQACGS  PF+CLSGAATWGCADNELAWA
Sbjct:    1 MIQAGAGAAALERGEEGSLIAGTEPRRKGWVVPALAAAVGVALLLACGLSAHHAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWA 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1474.3624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS0_ECTSI1.180e-9982.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1474contigEcto-sp13_S_contig1474:2..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score297.7
Seed ortholog evalue3.7e-78
Seed eggNOG ortholog2880.D8LSS0
Model size561
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG OGs2E594@1,2SC37@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_002830.1
Cds size561
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.7452195-CDS-Ecto-sp13_S_contig1474:1..391681462786.7452195-CDS-Ecto-sp13_S_contig1474:1..39Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 2..39 -
1681462786.7589924-CDS-Ecto-sp13_S_contig1474:438..6501681462786.7589924-CDS-Ecto-sp13_S_contig1474:438..650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 439..650 -
1681462786.7689552-CDS-Ecto-sp13_S_contig1474:1076..12121681462786.7689552-CDS-Ecto-sp13_S_contig1474:1076..1212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 1077..1212 -
1681462786.778205-CDS-Ecto-sp13_S_contig1474:1820..19951681462786.778205-CDS-Ecto-sp13_S_contig1474:1820..1995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 1821..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1474.3624.1prot_Ecto-sp13_S_contig1474.3624.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1474 2..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1474.3624.1

>prot_Ecto-sp13_S_contig1474.3624.1 ID=prot_Ecto-sp13_S_contig1474.3624.1|Name=mRNA_Ecto-sp13_S_contig1474.3624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MIQEGAGAAALERGEEGSLIAGTEPRRKGWVAPALAAVVGVALLLVCGLS
ANAREDASAAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGG
SAGGCADSASAWSGGDGCTSFCDLSGCADTLENTGVDDLPRRCLECDETQ
CSTLAGHPSQACGSAAPFMCLSGAATWGCADNELAWA
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mRNA from alignment at Ecto-sp13_S_contig1474:2..1995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1474.3624.1 ID=mRNA_Ecto-sp13_S_contig1474.3624.1|Name=mRNA_Ecto-sp13_S_contig1474.3624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1994bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1474:2..1995- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCAGGAGGGTGCCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGG
GTCGCTGATCGCTGGCACTGAGCCGCGGCGCAAAGGATGGGTGGCACCGG
CGTTGGCGGCGGTGGTTGGTGTCGCTCTGCTGCTGGTCTGTGGATTGTCT
GCTAATGCTCGGGAGGATGCTTCCGGTGTGTGTCTTTTGGAAAACATGTG
CTGCGCACACACGTCCCCAGCACAATGCACAACAATGCAACACAGCACCA
TGCTAGTTATTGGCGGGTAAGCGTGCTTAACACGAAGCACACGTGTGAGC
CCGATGTAACTGCTAGCTGCACTTGTAGTAGGTTCGGAGATGGGAACTTC
AACACGAGGTTGGCGAATCAAACGGCAGCCAGGGCTTACCACACAATACA
AGCAGCGTGCTTGCGGACCTGCCAAGCCGCGATGTCCAGGGTCGTAGATA
CCGACGTGAAGTCCATTGAGTAATAATGAATCAAGACGCGCAATCCACGT
TTGCCATGGGCTATGCTTGCAGAAACGCCATCGCTAAGCCTAAGGTTTGC
ACATCCCGGACCAACTTCACAGGCGTGCGAGCGGTGGTCTCAACAACTTG
ATTGTGTTTCTGTTGCTTGCTTGCCCCCTAACAGTCTTGTTTTCATCCCA
TAGGTCCAGATGTCCAGTCTGTTTCGTTCCCACACGCGCAGAGGGTTTGC
CATGACAGAGGCGTTTGCACCTTCGAAAAAAATCTCTTCCAACCGCACCG
CCTCCTCCGTCCGGCAACGACCCCCTCCCGCAGCTGCCGGCGCTGCCGCG
ACCCCCATGCAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTC
CTGCACGAGCTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGG
ACGGGGGCTCCGCTGGAGGGTGGGCGCCTTGAACCGTTTTTGCTAAATTC
GTCGTCGTCGTTGTTGACGGTCTGACCGGATGTTGAACCGTAGCTCAACT
CTTATATACCGCAAAACCTACCCTCGGTGTTTTAGATCCGTATCAAAGGT
GATGAGTGTAAGCTCCCGTCCCGTCCGCCAAAATTTGCTGCATAGGTCAT
TGGTATTGGCGTGCGCGCGCGCGCGCCTCACGCTTTTTGAGTCGTCTCAG
CGCAAGAATCCTACTTCAGGGTGTGCGTGTACAGCAACAAGATTGAGTGA
CCGTGAAACAACCAGAAGCAACGACACATCGCGTAAGAGAGATCGTCAAA
AACTCACATCGAGATTCCTATTTCGTTCCCCGGCGAGAGCCACACCACCA
CCACATCTGATGTCGCCTCTCTTCCGTACGCCCCCTTCTCAACAGGTGCG
CAGACAGCGCCTCTGCGTGGTCTGGAGGCGACGGCTGCACGTCCTTCTGC
GACCTCTCCGGCTGCGCCGATACCCTTGAGAACACCGGCGTGGACGACCT
GCCGCGACGCTGCCTGGAGTGCGACGAAACGCAGTGCTCCACCCTGGCCG
GGCATCCGTCGCAGGCGTGCGGCAGCGCGGCGCCGTTCATGTGTCTCTCC
GGCGCAGGTGTGTCTCGTGTGTCGTGTCGATGGCGCGACTGGTATTTCTT
TTGCGAGCGTGTATGCAGTACATACAGTTGGGGGGGGGGTGCTGAACAAC
GCCTGTGTGTGCCCGGCAAATCGACCGGCGCTACATAGTCAGAAAGACCG
GCGCTTTTTCAATCTACAGGATGACTTGATTAATCAGCCCATGTCGAGCA
ATGTATCCAGCGCTGTACAGGGCCACCGGCTCTATACAACGGACGTTGTT
GAGCCCCGCCCACTGCAGTCGTAGGTGGTGCTTGGATTCTTGTCGAACAC
TGCCTGTATGTGTCGCTTTTCTTCGAGAGTGTGAAGCTTTGGTGTTTTCT
CCGCGCTGTCGCTGTGCCTTTTGTTGATCCTCGGTTTTGCTTGCGTGCTT
GGGCAGCCACCTGGGGCTGCGCGGACAACGAGCTGGCGTGGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1474:2..1995-

>mRNA_Ecto-sp13_S_contig1474.3624.1 ID=mRNA_Ecto-sp13_S_contig1474.3624.1|Name=mRNA_Ecto-sp13_S_contig1474.3624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1474:2..1995- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCAGGAGGGTGCCGGGGCAGCAGCCCTTGAACGGGGGGAGGAAGG
GTCGCTGATCGCTGGCACTGAGCCGCGGCGCAAAGGATGGGTGGCACCGG
CGTTGGCGGCGGTGGTTGGTGTCGCTCTGCTGCTGGTCTGTGGATTGTCT
GCTAATGCTCGGGAGGATGCTTCCGCTGCCGGCGCTGCCGCGACCCCCAT
GCAGGCCTCCACGGACAGCGTCCCTTCCTGCAGCCTCCTGTCCTGCACGA
GCTCGGGCTGCGACTGGGACGGGGCCCCTTTCCTCTGCCTGGACGGGGGC
TCCGCTGGAGGGTGCGCAGACAGCGCCTCTGCGTGGTCTGGAGGCGACGG
CTGCACGTCCTTCTGCGACCTCTCCGGCTGCGCCGATACCCTTGAGAACA
CCGGCGTGGACGACCTGCCGCGACGCTGCCTGGAGTGCGACGAAACGCAG
TGCTCCACCCTGGCCGGGCATCCGTCGCAGGCGTGCGGCAGCGCGGCGCC
GTTCATGTGTCTCTCCGGCGCAGCCACCTGGGGCTGCGCGGACAACGAGC
TGGCGTGGGCA
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