mRNA_Ecto-sp13_S_contig14682.3582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14682.3582.1
Unique NamemRNA_Ecto-sp13_S_contig14682.3582.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14682.3582.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.570e-30
Identity = 131/152 (86.18%), Postives = 132/152 (86.84%), Query Frame = 1 
Query:    1 SAGAGGATRGGARTVSWNVPEALGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRINSRTGAELETAXXXXXXLLLSWEGLRYEIAVPRRRGSWFGKGDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDSVSGFAGPTRSA 456
            SAGA GATRGGARTVSWNVPEALGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DRIN+RTGAELETA  XXXXLLLSWEGLRYEIAVPRR  SWFGKGDAATXXXXXXXXXXXXXXXXX             VLDSVSGFAGPTRSA
Sbjct: 1262 SAGAAGATRGGARTVSWNVPEALGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDRINARTGAELETASPXXXXLLLSWEGLRYEIAVPRRSSSWFGKGDAATXXXXXXXXXXXXXXXXXGEEGRLL------VLDSVSGFAGPTRSA 1407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14682.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE1.570e-3086.18ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14682contigEcto-sp13_S_contig14682:2641..3212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score131.7
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D8LNU0
Model size573
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
Cds size570
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.5031645-CDS-Ecto-sp13_S_contig14682:2640..32101681462783.5031645-CDS-Ecto-sp13_S_contig14682:2640..3210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14682 2641..3210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14682.3582.1prot_Ecto-sp13_S_contig14682.3582.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14682 2641..3210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14682.3582.1

>prot_Ecto-sp13_S_contig14682.3582.1 ID=prot_Ecto-sp13_S_contig14682.3582.1|Name=mRNA_Ecto-sp13_S_contig14682.3582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
SAGAGGATRGGARTVSWNVPEALGGPPPPAAAAASGSRRFLSQGGWGDSF
RRKRRSSSDRINSRTGAELETAAPPPPPLLLSWEGLRYEIAVPRRRGSWF
GKGDAATTAAPPPPPPPPPRPPAGGGGARRGEEERLLVLDSVSGFAGPTR
SAGGRRAVVVAAGGAAAAARTSGSVEAGRRSAVSASTVEG
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mRNA from alignment at Ecto-sp13_S_contig14682:2641..3212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14682.3582.1 ID=mRNA_Ecto-sp13_S_contig14682.3582.1|Name=mRNA_Ecto-sp13_S_contig14682.3582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=572bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14682:2641..3212+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCTGGCGCCGGCGGGGCGACCCGTGGCGGGGCTCGGACCGTTTCGTG
GAACGTTCCGGAAGCACTCGGCGGGCCGCCACCGCCGGCCGCGGCGGCGG
CGTCGGGGAGCAGGCGGTTTTTGTCGCAGGGGGGTTGGGGCGACAGCTTC
CGCCGCAAGCGGCGCAGCAGCAGCGATCGGATCAACTCGCGGACGGGGGC
GGAGCTGGAGACGGCCGCGCCGCCGCCCCCGCCGCTGCTGCTGTCGTGGG
AAGGGCTGCGGTACGAGATAGCCGTCCCGCGTAGAAGAGGCTCCTGGTTC
GGGAAGGGGGACGCCGCCACGACTGCCGCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCGTCCTCCTGCCGGCGGCGGCGGCGCACGGCGGGGTGAAGAAG
AACGCCTCCTGGTGTTGGACTCCGTGTCAGGGTTTGCGGGACCGACGAGA
AGTGCCGGCGGGAGGCGCGCCGTCGTCGTCGCCGCCGGCGGAGCCGCCGC
CGCCGCACGCACCTCAGGGTCGGTGGAGGCCGGTCGCCGCTCGGCCGTGT
CTGCTTCTACGGTTGAGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14682:2641..3212+

>mRNA_Ecto-sp13_S_contig14682.3582.1 ID=mRNA_Ecto-sp13_S_contig14682.3582.1|Name=mRNA_Ecto-sp13_S_contig14682.3582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14682:2641..3212+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCTGGCGCCGGCGGGGCGACCCGTGGCGGGGCTCGGACCGTTTCGTG
GAACGTTCCGGAAGCACTCGGCGGGCCGCCACCGCCGGCCGCGGCGGCGG
CGTCGGGGAGCAGGCGGTTTTTGTCGCAGGGGGGTTGGGGCGACAGCTTC
CGCCGCAAGCGGCGCAGCAGCAGCGATCGGATCAACTCGCGGACGGGGGC
GGAGCTGGAGACGGCCGCGCCGCCGCCCCCGCCGCTGCTGCTGTCGTGGG
AAGGGCTGCGGTACGAGATAGCCGTCCCGCGTAGAAGAGGCTCCTGGTTC
GGGAAGGGGGACGCCGCCACGACTGCCGCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCGTCCTCCTGCCGGCGGCGGCGGCGCACGGCGGGGTGAAGAAG
AACGCCTCCTGGTGTTGGACTCCGTGTCAGGGTTTGCGGGACCGACGAGA
AGTGCCGGCGGGAGGCGCGCCGTCGTCGTCGCCGCCGGCGGAGCCGCCGC
CGCCGCACGCACCTCAGGGTCGGTGGAGGCCGGTCGCCGCTCGGCCGTGT
CTGCTTCTACGGTTGAGGGG
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