mRNA_Ecto-sp13_S_contig1467.3574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1467.3574.1
Unique NamemRNA_Ecto-sp13_S_contig1467.3574.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1467.3574.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.950e-50
Identity = 97/104 (93.27%), Postives = 98/104 (94.23%), Query Frame = 2 
Query:    2 TMLNKKAARGRRFSWACQQCEDESISPEAQKEATQKTNALSAVRVASTRSPGRSVTSGDIGRGKSPPWSKRGSAESRGNKTLSMSTTNAGDSNGHKLAENESGA 313
            TMLNKKAARGRRFSWACQQCEDE ISPEAQKEATQK NALSAVRVASTRSPGRSVTSGDIGRGKSPPWSKRGSAESRG+ TLSMS TNAGDSNGHK AENES A
Sbjct:  814 TMLNKKAARGRRFSWACQQCEDEHISPEAQKEATQKANALSAVRVASTRSPGRSVTSGDIGRGKSPPWSKRGSAESRGSNTLSMSNTNAGDSNGHKAAENESTA 917
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1467.3574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVL6_ECTSI1.950e-5093.27Hypothetical leucine rich repeat and GCG domain-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1467contigEcto-sp13_S_contig1467:1291..2384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score184.9
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D7FVL6
Model size315
KEGG koko:K17307
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
Cds size309
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.9849365-UTR-Ecto-sp13_S_contig1467:1290..12941681462782.9849365-UTR-Ecto-sp13_S_contig1467:1290..1294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1467 1291..1294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.9965782-CDS-Ecto-sp13_S_contig1467:1294..13541681462782.9965782-CDS-Ecto-sp13_S_contig1467:1294..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1467 1295..1354 +
1681462783.0063782-CDS-Ecto-sp13_S_contig1467:2135..23841681462783.0063782-CDS-Ecto-sp13_S_contig1467:2135..2384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1467 2136..2384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1467.3574.1prot_Ecto-sp13_S_contig1467.3574.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1467 1295..2384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1467.3574.1

>prot_Ecto-sp13_S_contig1467.3574.1 ID=prot_Ecto-sp13_S_contig1467.3574.1|Name=mRNA_Ecto-sp13_S_contig1467.3574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MLNKKAARGRRFSWACQQCEDESISPEAQKEATQKTNALSAVRVASTRSP
GRSVTSGDIGRGKSPPWSKRGSAESRGNKTLSMSTTNAGDSNGHKLAENE
SGA
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mRNA from alignment at Ecto-sp13_S_contig1467:1291..2384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1467.3574.1 ID=mRNA_Ecto-sp13_S_contig1467.3574.1|Name=mRNA_Ecto-sp13_S_contig1467.3574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1467:1291..2384+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGATGCTCAACAAGAAGGCGGCCAGGGGCAGGCGCTTCTCCTGGGCGT
GTCAGCAGTGTGAGGTGAGATTCATCAATGTGGTGGTCACGAGAGCGGCG
TCCCTGCTGACCGAACTGTTGGTCCAAGGCGCCGCCGCAGGGCATGGTAC
TGGCGAGTGTTGTCGAAGAACTTTTACTACGTATTGCACATGCCACCGTC
AAACACTATCTTTTGTTCCAGCCGGTTCGCTAGATATCGTTGGTATTATG
CTGATATTGTCGGTTAACAACGACCAGAGATTTTGAGGTCGGTACAACGC
ACAACACGGATCACCAAACAAAGCGTACACCGCATAGTATACGGAAAAAC
GTGAGACTTCATCGCACCCCACTGTGATCGGTTGATTTGTGTGTGCCGCT
GTGTTGGAGAGGAATTCCGTTCTGTCTACTTGTCTCATAATGTGGTGGAC
CTTCGTCTTTGAACTCCCTCCAACAGTGCGATTACTCTTGAACACATCCC
AACAAAGCTGCATGGCTCTGTCGATATATTCTCCGCCTCCCCCGGCCTGT
GTTTCCACTCCACAAGGTCAAAGGATGAACGGTCAAGCTACACTAGATAA
CAAGTGTATCGTTATCTTCTTCCCTGGTCACCTCTTTCTCACTCTGCCTG
CAGGATGCACAGCGCGCTCCCCCACTCTCCGATGCCCGCATACCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCACACCACACAAAACCCAAAACAACCAAA
AAAAAACCCACACCCACCAAACCCCCCAACTCNNNNCGAAATACATCCAA
AACATGAGTATGCCCCCCCCCCCTCCCTCCTCTATTCTGTCGCAGGACGA
AAGCATTTCCCCTGAAGCCCAGAAAGAAGCGACGCAAAAGACCAATGCCT
TGAGTGCTGTCAGGGTGGCCAGCACCCGAAGCCCTGGTAGGTCGGTAACT
TCGGGCGACATTGGTCGGGGCAAATCACCGCCCTGGAGCAAGAGGGGCTC
CGCCGAATCACGGGGCAACAAGACGCTCTCAATGAGCACTACCAACGCCG
GCGACAGCAACGGCCACAAACTTGCAGAAAATGAGAGCGGAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1467:1291..2384+

>mRNA_Ecto-sp13_S_contig1467.3574.1 ID=mRNA_Ecto-sp13_S_contig1467.3574.1|Name=mRNA_Ecto-sp13_S_contig1467.3574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1467:1291..2384+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACAAGAAGGCGGCCAGGGGCAGGCGCTTCTCCTGGGCGTGTCA
GCAGTGTGAGGACGAAAGCATTTCCCCTGAAGCCCAGAAAGAAGCGACGC
AAAAGACCAATGCCTTGAGTGCTGTCAGGGTGGCCAGCACCCGAAGCCCT
GGTAGGTCGGTAACTTCGGGCGACATTGGTCGGGGCAAATCACCGCCCTG
GAGCAAGAGGGGCTCCGCCGAATCACGGGGCAACAAGACGCTCTCAATGA
GCACTACCAACGCCGGCGACAGCAACGGCCACAAACTTGCAGAAAATGAG
AGCGGAGCG
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