mRNA_Ecto-sp13_S_contig14662.3570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14662.3570.1
Unique NamemRNA_Ecto-sp13_S_contig14662.3570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14662.3570.1 vs. uniprot
Match: D8LIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV7_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 3.700e-91
Identity = 214/229 (93.45%), Postives = 222/229 (96.94%), Query Frame = 1 
Query:   40 ARPTPLVALRLLREAQEERSLAVKELSALRLRNEHNHTRLVKVEQELKNEKEXXXXXXXXXXXXXXXXDKLERRCRSAEKEVEAQKELINSYERDTFRKPAGETWLSDHAALESALAAAKEEAKSLRRAAEGQVSALEAGRLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMAEKEAANGTGGQKRKVLHFKDNPAARAAEAAKKDTKRKLEALTEENKRLVQQV 726
            ARPTPLVALRLLREAQEERSLAVKEL+ALRLRNEHNHTRL KVEQELKNEKE    XXXXXXXXXXXXDKLERRCRS+EKEVEAQKELINSYERDTFRKPAGETWLSDHAALESALAAAKEEA+SLRRAAEGQVSALEAGRLRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMAEKEAA+GTGGQK KVLHFKDNPAARAAEAAK++TK+KLEALTEENKRLVQQ+
Sbjct:  382 ARPTPLVALRLLREAQEERSLAVKELTALRLRNEHNHTRLAKVEQELKNEKERGESXXXXXXXXXXXXDKLERRCRSSEKEVEAQKELINSYERDTFRKPAGETWLSDHAALESALAAAKEEAESLRRAAEGQVSALEAGRLRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMAEKEAASGTGGQKGKVLHFKDNPAARAAEAAKRETKKKLEALTEENKRLVQQL 610
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14662.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV7_ECTSI3.700e-9193.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14662contigEcto-sp13_S_contig14662:29..3970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score298.5
Seed ortholog evalue2.8e-78
Seed eggNOG ortholog2880.D8LIV7
Preferred nameMAD1L1
Model size726
KEGG rclassRC00296
KEGG koko:K06638,ko:K06679,ko:K18203,ko:K18438
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04110,ko04111,ko04113,ko04114,ko04914,ko05032,ko05166,ko05203,map00230,map04110,map04111,map04113,map04114,map04914,map05032,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000922,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005829,GO:0005856,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007162,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008285,GO:0008608,GO:0009607,GO:0009719,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015630,GO:0016043,GO:0022402,GO:0022407,GO:0022408,GO:0030071,GO:0030155,GO:0031570,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0042127,GO:0042129,GO:0042130,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043515,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044732,GO:0044774,GO:0044877,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0046907,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050000,GO:0050670,GO:0050672,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051128,GO:0051129,GO:0051169,GO:0051179,GO:0051234,GO:0051249,GO:0051250,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070013,GO:0070663,GO:0070664,GO:0070727,GO:0071173,GO:0071174,GO:0071216,GO:0071459,GO:0071495,GO:0071840,GO:0072396,GO:0072414,GO:0072417,GO:0072476,GO:0072479,GO:0072485,GO:0072686,GO:0090068,GO:0090231,GO:0090232,GO:0090235,GO:0090266,GO:0090267,GO:0090268,GO:0098687,GO:0098813,GO:0099606,GO:0140014,GO:1901925,GO:1901976,GO:1901978,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903037,GO:1903038,GO:1903047,GO:1903504,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons6
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG4593@1,KOG4593@2759
Ec32 ortholog descriptionMitotic checkpoint protein
Ec32 orthologEc-20_001730.1
EC2.1.1.233,3.1.4.17,3.1.4.35
Cds size726
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14662.3570.1prot_Ecto-sp13_S_contig14662.3570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14662 29..3970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.7549446-CDS-Ecto-sp13_S_contig14662:28..1391681462782.7549446-CDS-Ecto-sp13_S_contig14662:28..139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 29..139 +
1681462782.7663083-CDS-Ecto-sp13_S_contig14662:470..5521681462782.7663083-CDS-Ecto-sp13_S_contig14662:470..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 471..552 +
1681462782.774885-CDS-Ecto-sp13_S_contig14662:1330..14461681462782.774885-CDS-Ecto-sp13_S_contig14662:1330..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 1331..1446 +
1681462782.7960079-CDS-Ecto-sp13_S_contig14662:2533..27421681462782.7960079-CDS-Ecto-sp13_S_contig14662:2533..2742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 2534..2742 +
1681462782.8070626-CDS-Ecto-sp13_S_contig14662:3365..34591681462782.8070626-CDS-Ecto-sp13_S_contig14662:3365..3459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 3366..3459 +
1681462782.817509-CDS-Ecto-sp13_S_contig14662:3856..39701681462782.817509-CDS-Ecto-sp13_S_contig14662:3856..3970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14662 3857..3970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14662.3570.1

>prot_Ecto-sp13_S_contig14662.3570.1 ID=prot_Ecto-sp13_S_contig14662.3570.1|Name=mRNA_Ecto-sp13_S_contig14662.3570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
GGGGGGGGGGGGGARPTPLVALRLLREAQEERSLAVKELSALRLRNEHNH
TRLVKVEQELKNEKERGESVHARAEEMELELDKLERRCRSAEKEVEAQKE
LINSYERDTFRKPAGETWLSDHAALESALAAAKEEAKSLRRAAEGQVSAL
EAGRLRGRAAKAEAALGEAIAERDQAIKAAERYGDALAMAEKEAANGTGG
QKRKVLHFKDNPAARAAEAAKKDTKRKLEALTEENKRLVQQV
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mRNA from alignment at Ecto-sp13_S_contig14662:29..3970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14662.3570.1 ID=mRNA_Ecto-sp13_S_contig14662.3570.1|Name=mRNA_Ecto-sp13_S_contig14662.3570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14662:29..3970+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGCTAGGCCCAC
CCCATTGGTGGCGCTTCGGCTGCTCCGGGAGGCTCAAGAGGAACGGTCGC
TCGCGGTCAAGGTTGGCGTTGTTTGATGTTAATGTTCTGGTCGTTGTTCA
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGGTAGTGGTGGTG
GTGGCGATGGTTCGTTTGTCAACGGAAAGTTGGCCTTCCCGTCGTGGATG
CACGTAGCATTTCCACAACGCATGTTGGAGATTTCAGTGTTGTTGTGTAC
GTCGTTGATGTTTCCTCTACCTCGTTAGTGTTGCTCCTTCCTTTTTCTCT
CCTCTATACCCCCACCCTCCTGGTTACTGTACTTCATTCTCGTTTCCTTT
TTTGTCACTTTACGTTCGTCGGGCGTTCATCATGATCATCAGGAGCTGTC
GGCGCTGAGGCTACGCAACGAGCACAATCACACCCGTCTCGTAAAGGTCG
AGCAGGAGTTGAAGAATGAGAAAGGTGGTGTTGTAGTCACTACAGCAGTG
TTGGGCGTCTTAAATGGTCCCCCTCACTCTCGTTGCACGAGTGGATTATT
GCTTTTGGCGCGACTATTGGTCGGCCGCCCGCCCAGAAGTTAGAGGTCCC
ATCTTCCTCTCGCTGTCTCCCTCCCTCCACCTCTCTCTCTCGCTCTCTCT
CGCTTTCTCGCCGTCTCTTGTAACAATGGACGATGGCTTTGTGTTGAAGC
AAGCGCGCTTAGGACGTTCACATGCGCGGTTGAAAATGGGAACGTTTTCC
TGCTTTTCTTAATTCAGCGTGCCGCATGCGAAGATGTCTATTGTTGTGGT
TTTGAGTGGGGCAATCGGGTGTTTGGGATATGTAGGCGGACCCCAATGCT
TGCGGGTTGGCGCACCAGTTCCCTGCCGCTAAGTTTGTGTGTTGTGTGTA
TTGTTTCCACCCTGTACGTTTCTCTCTCGCCCTCCTCCGCCTTCTCTCTC
TCGCCTTCCAACCTCTACCTCTTACTCTCTCTCTTCCCCCCCCCCACCCT
CTCTCGTTGCTACCACCTTGTCCCTCTCTCTGTCTGTCGGCCTCTGCCAT
TCTCTCTCCACCCCCGTGCCCGCCTCTCTATTGTGCCCACCCGCTTTCGA
CGGCGGTGCGACCGTGTTACTGTTCGGAATTGGCATAAATGGAATGTGTT
GGAACGAAAACAAATCGGCACGGACTTCCAATGGAACGAAAACGGAATGG
AATGGAATTCGAATGTGGGATGGAACGAACACAAAACGGCTCTGAAAATC
AGAGCGCGGCGAGTCTGTCCACGCGCGTGCGGAAGAGATGGAGTTGGAGC
TGGACAAGCTGGAGAGGCGTTGCCGCTCAGCGGAGAAGGAGGTCGAGGCC
CAGAAGGAGCTCATCAACGTGAGGAAAGACGAAAGATAAATATGCCCCTA
CGAGGGAAAAGAGAAAACGATGCCCTCGAGGCCCGAAAGGAATTCATCAA
CGTAAAGAAAAAAAAATGAAGCGACAACAAAAAAGAAAATCCCCGTAATA
AGGACAAAAGACGACCCCGTTGATGCCCAGGGGGGGCTCAAATCAATGTG
AGGAAAGAAAATACAGATTTCTATTGGAAACGAAAATAACGATCCCGTTA
AGGAAAGAAGAGAACGATCCCTATAAGGAATCAAAATAATGATCCCTTCT
AGGAAAGAAAAAACGATCCAGTTACAATAATAGAAAGAAGAAAACGACCC
CCCCACTAGGAATACTCTGGAGTTTTTAGAAAGATGTGTGTTCGTCCACG
CTCTTTGACGGGTGTTGATGTACAGGGGGTGATTGTGAGGGGTAGGATTT
CCATCCCAGGCGTGTTCGTCGGCTTCAGTTGGCCTTTCGCAGGGAAACGA
ACCGGAAAATAGCACGGTGTGTTGGTGCACGATCTATGCGTTTGGCCGTC
TTTGTGATTATATGGCACGTTCTTTCCTATGACGTGTCTATAAGCCCGCG
GGTGGCATATAAATGCCACCTTTTGTTTTCCAGCTGAAGGTGTGACCCGC
TCGCTTTTGCTTTTCCAATTCCACGATCCTAGTCCTGGATGCGCCTCCTC
TCCTCTGGTGCGGATGCATCTAGAAATGTGCCAAAACCACAACACCATTG
ACTTCGGACACGCACATTCTGAGCAAACTGCCCGGCAGAAATTCCTCTGC
TGCACGCCACAGGGAACACTTACCGCAACGTTAATGCGCGCAATAGCTGG
GAGCCGCTTTATTTTGCGGATCCAACCCATTCCACTGCTATTTTCGCCCG
CCCCCTCCCCGTATGCCCACTGCTGTACCTTCTCCTTTTGGCGATCCATG
GGCATCCCTCTTTGCATCTCATGTCTGTCTGTATTTTTCCCTTGTCACTG
CTCTGTCTGGCATCTATCTCATGTATATTCCCGCTGTCATCTGTGTATTG
GTACACGGTGTACTTGTGTTATCATTGTGCGACGACGGGCGCCGCGTGAA
AAAAGTCGTACGAGAGAGACACCTTCCGCAAGCCCGCGGGCGAGACCTGG
CTCTCCGACCACGCCGCCCTCGAGTCGGCGCTGGCCGCGGCCAAGGAGGA
GGCCAAGAGCCTCAGGAGGGCGGCGGAGGGACAGGTTTCCGCGCTGGAGG
CGGGGCGTCTCAGGGGGCGCGCGGCCAAGGCGGAGGCAGCCCTGGGGGAG
GCGATCGCCGAACGGTTAGAATTAGAACCTTTTTTTGTCTGTTGGGATCT
GAACCTTTTTTTAGTCTGTTGCGGTCTGTTTTGTTGTTGGTGGTTTTGAT
TTTGGTAATCTTGGTGGGGGTTTTGGTGGTGGCGACACTTTCGCGGAAAG
GTTACGGAAAACGCTTCATTTGTTCAATAGGCGTTGTTGTTGTGAGGCTG
TTGGTGTCTTCATTTCATTCTGGTCGGGTGCGTTCGGTGATCGCGAGGTA
GTTTTGGGAGACGAGAAGTGACGGCAACAAGCTAAGTATTCACCAGGCGG
AAGAAAGTGGCTTTCCCTTCCTTTTGTTTTGAGATCAACTCTTTTATCAA
AAACCGAACAGAGTGTGATTATCATGGCGATCGAGTTCCCCTCTCACCAA
TACTCTGCTGTAGATGTGCGCTTCGTCCGCTTTTCCTCGTTGTCGAACGT
AGCTTCCCTTGAGGCAGCAAAAATTCAATGAACACCCGCTGCAGTGTTCC
GGGTTTGGTGATAAGATGGGTCGCCCGTACGGCAAGAGGTTGACCGCTTT
GTCTGCCTCATCACTATCTTTGGTGGAAGAACGCAATGTGCAACATGTGC
CACGTTTTTTTCCACCGATGTATGATGGCATCAACAGGGACCAAGCGATT
AAAGCTGCCGAGCGGTATGGTGACGCGCTCGCCATGGCTGAAAAGGAGGC
TGCGAATGGTACCGGCGGGCAGAAGAGGAAGGTGATGAGGGGGTAGAGAC
ACGGGGGAGCATACTCATGTAGAGGCATGCCGTAAGCGGTAGACCATTGC
CGCATAGCGGTGTACCCGTCTGACACACGGACGTTGTGCGCAGTACTCTG
TTAACAGTGTTCTGGCGTCGTGCTTCTCGAAACCTCGTATTGTTTTTTTT
TTTTTCTGTGTGAGTGCTTGCGTTTTTTGTTCAATTCGTGTGTCCGTTTT
CGTTGTGACCCCTCGTTTGTTTCATGCCCCCCCCGCATACCATTCCGGCA
TTGTAGTGATGCGAGCTCTCAATGGTGTGACGACTTCGGCATGCCTTTAC
ATGAGTACCCCCCGCCCCTCCACCCCCGTGATCGCGTTGGGGTCCCCCAT
TGTTGGATGACGGTTTCGCAAACGCAAGGTGCTGCACTTCAAGGACAACC
CAGCAGCCCGGGCGGCCGAAGCGGCCAAGAAAGACACCAAGAGGAAGCTT
GAAGCGCTCACGGAGGAGAACAAACGCCTCGTGCAACAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14662:29..3970+

>mRNA_Ecto-sp13_S_contig14662.3570.1 ID=mRNA_Ecto-sp13_S_contig14662.3570.1|Name=mRNA_Ecto-sp13_S_contig14662.3570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14662:29..3970+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGCTAGGCCCAC
CCCATTGGTGGCGCTTCGGCTGCTCCGGGAGGCTCAAGAGGAACGGTCGC
TCGCGGTCAAGGAGCTGTCGGCGCTGAGGCTACGCAACGAGCACAATCAC
ACCCGTCTCGTAAAGGTCGAGCAGGAGTTGAAGAATGAGAAAGAGCGCGG
CGAGTCTGTCCACGCGCGTGCGGAAGAGATGGAGTTGGAGCTGGACAAGC
TGGAGAGGCGTTGCCGCTCAGCGGAGAAGGAGGTCGAGGCCCAGAAGGAG
CTCATCAACTCGTACGAGAGAGACACCTTCCGCAAGCCCGCGGGCGAGAC
CTGGCTCTCCGACCACGCCGCCCTCGAGTCGGCGCTGGCCGCGGCCAAGG
AGGAGGCCAAGAGCCTCAGGAGGGCGGCGGAGGGACAGGTTTCCGCGCTG
GAGGCGGGGCGTCTCAGGGGGCGCGCGGCCAAGGCGGAGGCAGCCCTGGG
GGAGGCGATCGCCGAACGGGACCAAGCGATTAAAGCTGCCGAGCGGTATG
GTGACGCGCTCGCCATGGCTGAAAAGGAGGCTGCGAATGGTACCGGCGGG
CAGAAGAGGAAGGTGCTGCACTTCAAGGACAACCCAGCAGCCCGGGCGGC
CGAAGCGGCCAAGAAAGACACCAAGAGGAAGCTTGAAGCGCTCACGGAGG
AGAACAAACGCCTCGTGCAACAGGTT
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