mRNA_Ecto-sp13_S_contig14650.3561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14650.3561.1
Unique NamemRNA_Ecto-sp13_S_contig14650.3561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14650.3561.1 vs. uniprot
Match: D7FPC8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC8_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 3.590e-49
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 TKKWQGDRAGGAKTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAVN 273
            TK WQGDR GGA TADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDA +
Sbjct:  153 TKNWQGDRGGGANTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAAD 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14650.3561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPC8_ECTSI3.590e-4994.51Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14650contigEcto-sp13_S_contig14650:3420..4363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score178.7
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D7FPC8
Preferred nameLRRC72
Model size273
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_003890.1
Cds size273
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.15949-CDS-Ecto-sp13_S_contig14650:3419..35271681462782.15949-CDS-Ecto-sp13_S_contig14650:3419..3527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 3420..3527 +
1681462782.1832712-CDS-Ecto-sp13_S_contig14650:3781..38801681462782.1832712-CDS-Ecto-sp13_S_contig14650:3781..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 3782..3880 +
1681462782.1923146-CDS-Ecto-sp13_S_contig14650:4297..43631681462782.1923146-CDS-Ecto-sp13_S_contig14650:4297..4363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 4298..4363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14650.3561.1prot_Ecto-sp13_S_contig14650.3561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14650 3420..4363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14650.3561.1

>prot_Ecto-sp13_S_contig14650.3561.1 ID=prot_Ecto-sp13_S_contig14650.3561.1|Name=mRNA_Ecto-sp13_S_contig14650.3561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
TKKWQGDRAGGAKTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRI
LLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAVN
back to top

mRNA from alignment at Ecto-sp13_S_contig14650:3420..4363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14650.3561.1 ID=mRNA_Ecto-sp13_S_contig14650.3561.1|Name=mRNA_Ecto-sp13_S_contig14650.3561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14650:3420..4363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAAGAAATGGCAGGGCGATCGAGCCGGGGGTGCCAAGACCGCTGACCC
CTCCCCAGCGGCGGCGCGTCCTCTGGACACCAAGCGGATGCAAGGTCTGC
TTCGAAAAGTGGGTTCAACCCCTCACAACAACCCTAAACTATACTTGCAT
CTTGTTGATGTATCTGTTGAGCTCATTTACCCGCTCTTGGTGCAAGCAGC
CCCCTTTTTTGTTCATCGCGCTTAGGGGCGCGGTTGCACACCGGCCACGG
TGGGGAAATGCTCCATTAATAGCCGAAACCTAGGTATACACCCGACCATC
CGCTGCTGGCACAAAGCAAGCGTTATATTTACCTTTCTGTATTATGACGT
CCCCCTTCGAAGGAGCTAAGTCGTATGACAGCCATCGTCAAACAGCGCCG
GATCCTGCTAAAGGAGTGGTTCATGGCGGAGGATGCCCGGCGAGAGGAAG
TGGTGACTCAGGTTGGTGGAGGGTGGGGGAAGGTAGCAACGAGAATCAGT
CTGGAAAAACTTTGAAGTTCACCTTTCTTAGCGTCAGTGCGCGCTTTATC
GGCGGTGACAGGGAATAACGAAACAAACGTTTTCCAGAGGTGTGACCATC
CGTGCTCGATGAGGTCAGGAAGACGTTCAGAAATAATTGTGTACCAGGTT
TTGGGGAGGGGAGGGTATGGTCATCCGTTACAAGAACCCCCCCCGTACAG
CCAACGATGGTAGCATGAACTTCCGCCCCTCCTCTCCTGTGTTACGTGAC
AGGTTATTGCAATGTAGATAGCTCCTGTAAACATCCTGATGCGGACAAGT
GCCACAACTCGTCCTGTATTCTGCCCGCGAAAACATCAGTCAAACCGCCT
TGTCCCCCACCTCACAAAACACGAACAGCACCTGTTCACGAGATGCCTCA
GGTCGCACGGGCTGTGGCCAGACGTGGGTCCCGACGCCGTCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14650:3420..4363+

>mRNA_Ecto-sp13_S_contig14650.3561.1 ID=mRNA_Ecto-sp13_S_contig14650.3561.1|Name=mRNA_Ecto-sp13_S_contig14650.3561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14650:3420..4363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAAGAAATGGCAGGGCGATCGAGCCGGGGGTGCCAAGACCGCTGACCC
CTCCCCAGCGGCGGCGCGTCCTCTGGACACCAAGCGGATGCAAGGTCTGC
TTCGAAAAGAGCTAAGTCGTATGACAGCCATCGTCAAACAGCGCCGGATC
CTGCTAAAGGAGTGGTTCATGGCGGAGGATGCCCGGCGAGAGGAAGTGGT
GACTCAGCACCTGTTCACGAGATGCCTCAGGTCGCACGGGCTGTGGCCAG
ACGTGGGTCCCGACGCCGTCAAC
back to top