mRNA_Ecto-sp13_S_contig14635.3555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A6H5K988_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K988_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.260e-53 Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
+YEQLNSQG+YCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK
Sbjct: 547 VYEQLNSQGVYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 637
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: D8LD59_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD59_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.930e-53 Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
+YEQLNSQG+YCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK
Sbjct: 619 VYEQLNSQGVYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 709
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A7S2CVW9_9STRA (RNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVW9_9STRA) HSP 1 Score: 120 bits (300), Expect = 4.280e-33 Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
+YE+LN G+YC+L+TGQEK+EVPFA HV+CT+EM S Y+VAVIDEIQM+ + RG SWT A+LG+ EIHVCG ME LV ++ +
Sbjct: 32 VYEELNRDGVYCTLVTGQEKKEVPFAKHVACTMEMTSISETYDVAVIDEIQMIGNSSRGHSWTRALLGVQAREIHVCGSMEAEALVRSICE 122
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: B5Y521_PHATC (RNA helicase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y521_PHATC) HSP 1 Score: 120 bits (302), Expect = 1.800e-31 Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
IYE+L + G+YC+L TGQE+RE+PFATH + T+EMAS V++++V VIDEIQM+ D++RG +WT A+LG EIHVCGG+E +VE +AK
Sbjct: 63 IYEKLTAAGVYCNLYTGQERREIPFATHGAATVEMASVVDDFDVVVIDEIQMIEDQERGFAWTRALLGSRAKEIHVCGGLEAKEIVERIAK 153
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A8J2X0H6_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0H6_9STRA) HSP 1 Score: 120 bits (302), Expect = 5.000e-30 Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
++E+LN G+YCSL TGQE+REVPFATH S TIEM S Y+VAVIDEIQ++ +RG SWT A+LGL+ EIHVCG ++ + LVE +AK
Sbjct: 103 VHERLNDAGVYCSLFTGQERREVPFATHASSTIEMVSLQERYDVAVIDEIQLIGSSERGHSWTRALLGLDAREIHVCGALDASELVEDLAK 193
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A6G0X0Y1_9STRA (RNA helicase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0Y1_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.270e-29 Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
IYE LN G+YCSL+TG+EKRE+P ATHVSCT+EM S+ Y+VAV+DEIQM+ D +RG +WT A+ L EIHVCG ME LV+ A+
Sbjct: 240 IYETLNMDGVYCSLITGEEKREIPLATHVSCTVEMCSSTTPYDVAVVDEIQMIGDPERGWAWTRALSCLQAKEIHVCGSMEAVELVKNFAQ 330
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A7S1C413_9STRA (RNA helicase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C413_9STRA) HSP 1 Score: 113 bits (283), Expect = 6.350e-29 Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
IYE LN G+Y SLMTGQE+REVPFA+HVSCT+EM S E AVIDEIQM+AD RG SWT A+LG+ E+HVCG +V A+ +
Sbjct: 115 IYESLNRDGVYASLMTGQERREVPFASHVSCTVEMTSVRERVECAVIDEIQMIADVGRGHSWTRALLGVQADEVHVCGDPSVIPVVRALCE 205
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A1Y1I4Y5_KLENI (RNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4Y5_KLENI) HSP 1 Score: 117 bits (293), Expect = 1.160e-28 Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVL 255
I++ LN+ G+YC+L TGQE+R VPFA H SCT+EMA NEYEVAVIDEIQM+AD+ RG +WT A+LGL EIHVCG +G+VL
Sbjct: 709 IFDTLNADGVYCNLTTGQERRTVPFANHTSCTVEMAHLGNEYEVAVIDEIQMMADDHRGWAWTRALLGLQAKEIHVCG--DGSVL 791
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: F0YC56_AURAN (RNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC56_AURAN) HSP 1 Score: 115 bits (289), Expect = 1.670e-28 Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAM 267
+YE+LN+ G YCSL TGQE+REVPFATH SCTIEM ++VAV+DEIQM+ RG +WT A+ GL+ EIHVCG ++ A LVE +
Sbjct: 65 VYERLNAAGCYCSLFTGQERREVPFATHASCTIEMVPVGRRWDVAVVDEIQMIGSPDRGHAWTRALHGLDAREIHVCGALDAAALVERL 153
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Match: A0A1V9YAL5_9STRA (RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAL5_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.030e-28 Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAK 273
IYE LN G+YCSL+TG+EKREVP +THVSCT+EM S Y+VAV+DEIQM+ D +RG +WT A+ L EIHVCG ME LV A+
Sbjct: 241 IYETLNMNGVYCSLVTGEEKREVPMSTHVSCTVEMCSAGTTYDVAVVDEIQMIGDPERGWAWTRALSCLQAKEIHVCGSMEAVDLVRKFAE 331 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14635.3555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14635.3555.1 >prot_Ecto-sp13_S_contig14635.3555.1 ID=prot_Ecto-sp13_S_contig14635.3555.1|Name=mRNA_Ecto-sp13_S_contig14635.3555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp IYEQLNSQGIYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIback to top mRNA from alignment at Ecto-sp13_S_contig14635:280..1106+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14635.3555.1 ID=mRNA_Ecto-sp13_S_contig14635.3555.1|Name=mRNA_Ecto-sp13_S_contig14635.3555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14635:280..1106+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14635:280..1106+ >mRNA_Ecto-sp13_S_contig14635.3555.1 ID=mRNA_Ecto-sp13_S_contig14635.3555.1|Name=mRNA_Ecto-sp13_S_contig14635.3555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14635:280..1106+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |