mRNA_Ecto-sp13_S_contig14620.3549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14620.3549.1
Unique NamemRNA_Ecto-sp13_S_contig14620.3549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 5.190e-23
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHP EDVFGVQV
Sbjct:  371 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPSEDVFGVQV 416
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.080e-18
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RR+MKD GADITCGEMAL  +LLKG  SEWALL+RH CEDVFGVQV
Sbjct:   22 RRIMKDLGADITCGEMALGQNLLKGQASEWALLKRHACEDVFGVQV 67
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A7S2PN00_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PN00_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.610e-18
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RR++K  GADITCGEMA++ +LLKG GSEWALL+RHPCEDVFGVQ+
Sbjct:  185 RRILKGLGADITCGEMAVAENLLKGQGSEWALLKRHPCEDVFGVQI 230
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A5J4YFM9_9CHLO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YFM9_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RR+ K  GADITCGEMAL+ +LL+G GSEWALL+RHPCED+FGVQV
Sbjct:  529 RRICKGLGADITCGEMALATNLLQGQGSEWALLKRHPCEDMFGVQV 574
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A2V0NJ55_9CHLO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NJ55_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRV KD G DITCGEMAL+ +LL+G  SEWALL+RHPCEDVFGVQ+
Sbjct:  477 RRVCKDLGCDITCGEMALATNLLQGQASEWALLKRHPCEDVFGVQI 522
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A7S0L4D2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4D2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.820e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRV K  G DITCGEMA++ +LL+G  SEWALLRRHPCED+FGVQ+
Sbjct:    7 RRVCKAYGVDITCGEMAMATNLLQGQASEWALLRRHPCEDIFGVQL 52
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A7R9Z3C1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3C1_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 2.240e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRV K  GAD+T GEMAL+ +LL+GN SEWALL+RHPCED FGVQV
Sbjct:   23 RRVCKGLGADVTVGEMALATNLLQGNASEWALLKRHPCEDFFGVQV 68
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A2R5GXE1_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXE1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.130e-16
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRV+KD GADITCGEMAL+  ++ G+GSEWALLRRH CED FGVQ+
Sbjct:  284 RRVVKDLGADITCGEMALAKDIVSGSGSEWALLRRHKCEDFFGVQI 329
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A0M0LS64_9EUKA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LS64_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 4.130e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RRV KD G DITCGEMAL+  LL+G+ SEWALLRRHPCED+FGVQ+
Sbjct:  225 RRVCKDFGVDITCGEMALATSLLQGSPSEWALLRRHPCEDLFGVQI 270
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BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Match: A0A250X852_9CHLO (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X852_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-15
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RRVMKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV 138
            RR+ K  GADITCGEMA++ +LL+G  SEWALL+RHPCED+FGVQ+
Sbjct:  417 RRICKGLGADITCGEMAMATNLLQGQASEWALLKRHPCEDIFGVQI 462
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14620.3549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK1_ECTSI5.190e-2397.83tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 T... [more]
A0A835ZAB5_9STRA9.080e-1880.43Dus domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2PN00_9STRA9.610e-1876.09tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A5J4YFM9_9CHLO1.190e-1676.09tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A2V0NJ55_9CHLO1.190e-1676.09tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A7S0L4D2_9EUKA1.820e-1671.74Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7R9Z3C1_9CHLO2.240e-1673.91Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A2R5GXE1_9STRA4.130e-1673.91tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A0M0LS64_9EUKA4.130e-1676.09tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A250X852_9CHLO1.050e-1569.57tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14620contigEcto-sp13_S_contig14620:385..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.8
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog2880.D7FVK1
Preferred namedus3l
Model size138
KEGG koko:K05544
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002943,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Exons1
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2333@2759
EC1.3.1.89
Cds size129
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.1272771-UTR-Ecto-sp13_S_contig14620:384..3931681462781.1272771-UTR-Ecto-sp13_S_contig14620:384..393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14620 385..393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.1399395-CDS-Ecto-sp13_S_contig14620:393..5221681462781.1399395-CDS-Ecto-sp13_S_contig14620:393..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14620 394..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14620.3549.1prot_Ecto-sp13_S_contig14620.3549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14620 394..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14620.3549.1

>prot_Ecto-sp13_S_contig14620.3549.1 ID=prot_Ecto-sp13_S_contig14620.3549.1|Name=mRNA_Ecto-sp13_S_contig14620.3549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MKDQGADITCGEMALSHHLLKGNGSEWALLRRHPCEDVFGVQV
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mRNA from alignment at Ecto-sp13_S_contig14620:385..522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14620.3549.1 ID=mRNA_Ecto-sp13_S_contig14620.3549.1|Name=mRNA_Ecto-sp13_S_contig14620.3549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14620:385..522+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGGGTCATGAAGGACCAGGGAGCGGATATCACGTGCGGCGAGATGGC
CCTGTCCCACCACCTTCTCAAGGGCAACGGCAGCGAGTGGGCCCTCCTCC
GACGCCACCCTTGCGAGGACGTCTTCGGGGTGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14620:385..522+

>mRNA_Ecto-sp13_S_contig14620.3549.1 ID=mRNA_Ecto-sp13_S_contig14620.3549.1|Name=mRNA_Ecto-sp13_S_contig14620.3549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14620:385..522+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGACCAGGGAGCGGATATCACGTGCGGCGAGATGGCCCTGTCCCA
CCACCTTCTCAAGGGCAACGGCAGCGAGTGGGCCCTCCTCCGACGCCACC
CTTGCGAGGACGTCTTCGGGGTGCAGGTG
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