mRNA_Ecto-sp13_S_contig14540.3492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14540.3492.1
Unique NamemRNA_Ecto-sp13_S_contig14540.3492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14540.3492.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.430e-21
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  168 DMDERASASRRKTDDTSWSMAGESTLDDLLLAALGATEVDPGAVLPLTDIWALQHKSETPDPMDHQRNLFFESVSRALTPRRPRTVVLGYGAGDALFTPGEMLQI 482
            D ++     RR T ++  S  G   LD + LAALGATEV  G  LPL   WALQH  E PDP DH R   +E V +A TPRRPRTVVLG GAG AL   GE L I
Sbjct:  579 DAEKHVPEPRRATGESGNSPGGAPALDGVRLAALGATEVATGPELPLHVAWALQHALEPPDPTDHARLAAYEEVRQAFTPRRPRTVVLGCGAGGALLALGETLTI 683
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14540.3492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNQ8_9PHAE1.430e-2153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14540contigEcto-sp13_S_contig14540:105..1201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.3314474-CDS-Ecto-sp13_S_contig14540:104..4191681462776.3314474-CDS-Ecto-sp13_S_contig14540:104..419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14540 105..419 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.3423898-UTR-Ecto-sp13_S_contig14540:419..5101681462776.3423898-UTR-Ecto-sp13_S_contig14540:419..510Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14540 420..510 -
1681462776.3507683-UTR-Ecto-sp13_S_contig14540:1122..12011681462776.3507683-UTR-Ecto-sp13_S_contig14540:1122..1201Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14540 1123..1201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14540.3492.1prot_Ecto-sp13_S_contig14540.3492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14540 105..419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14540.3492.1

>prot_Ecto-sp13_S_contig14540.3492.1 ID=prot_Ecto-sp13_S_contig14540.3492.1|Name=mRNA_Ecto-sp13_S_contig14540.3492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MDERASASRRKTDDTSWSMAGESTLDDLLLAALGATEVDPGAVLPLTDIW
ALQHKSETPDPMDHQRNLFFESVSRALTPRRPRTVVLGYGAGDALFTPGE
MLQIG
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mRNA from alignment at Ecto-sp13_S_contig14540:105..1201-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14540.3492.1 ID=mRNA_Ecto-sp13_S_contig14540.3492.1|Name=mRNA_Ecto-sp13_S_contig14540.3492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14540:105..1201- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGTGAGGCACAGGTTTCGATCATGGCCTTCGGTCAACGGCTAGCTGT
CTGCTGGCAATCCAAGGGTCGAATTGGAGGTGCGTCGGTTCATGGTGCGC
AGTGATTGGGGAGTCCGCGTTGTGTGGGGCGAACTCGCGTGTTTAGGACG
ATGTGCGGGGCTCGTATTTCGTTGAGACCACTTGCGAATCCAACCGTAGG
TGTTTTCCATATTTCGAGCGACTTGTTCATGTAGAGAACAGCTTCGACTG
TGTTTTGCGATTTGAGCAGATGCGGTATGCAAAGTTCAGGGGCAGTTCTT
TGCCGCTCGTAGATGTTTGATATCTTTCAGCCCGACTCATGCTGTTGATT
CAGGTTTGGACTCTTAGTTCGCGCGACACTAGCGATGACGCATGCCGAAT
CTCTCCAAAAGGTTTTGGCGTTCTACGGTCTACATATTTACTACTGGTAC
ATGTGTACTTCTGTGTCCGCGACTTTCGTGCTTTTCGCTAGTAGTCAGAG
CCTGCTTTGATATCAAGCTTATCGGGTTCTACCAACAAGTAGCGATATGC
TTTGGGAGCGTTGTGGACAGGGCTTTGCTAGGGGCCCAGATATGGAAGTT
GGAGATGTTCATGGTAACCCCTTGTCGTTTCGTCAAGGGGGCCTCTATTG
ACGTTCTGATGATATAATACACTTTGTTTGCCATCACAAAGGAGATGAAT
CGACCAGCCACCCGAGGCCACGGGGGGAAGACACTGGTCCTAAGCCCTGC
CTGGCTTCAGGCGTGTCCGTATACAGCACGATATGGACGAGCGCGCCTCC
GCCTCACGACGCAAAACTGACGACACCAGTTGGTCGATGGCAGGAGAGTC
AACGCTCGACGACCTTTTGTTGGCGGCTCTGGGAGCGACGGAAGTGGACC
CTGGTGCTGTGCTACCCCTGACGGATATCTGGGCTCTTCAGCATAAATCG
GAGACACCGGACCCGATGGACCACCAGAGAAACCTTTTCTTCGAGTCCGT
TAGCCGCGCCTTGACTCCAAGGCGTCCAAGAACTGTCGTTTTGGGATATG
GAGCTGGTGACGCTCTGTTCACACCAGGGGAGATGTTACAGATAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14540:105..1201-

>mRNA_Ecto-sp13_S_contig14540.3492.1 ID=mRNA_Ecto-sp13_S_contig14540.3492.1|Name=mRNA_Ecto-sp13_S_contig14540.3492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14540:105..1201- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGCGCGCCTCCGCCTCACGACGCAAAACTGACGACACCAGTTG
GTCGATGGCAGGAGAGTCAACGCTCGACGACCTTTTGTTGGCGGCTCTGG
GAGCGACGGAAGTGGACCCTGGTGCTGTGCTACCCCTGACGGATATCTGG
GCTCTTCAGCATAAATCGGAGACACCGGACCCGATGGACCACCAGAGAAA
CCTTTTCTTCGAGTCCGTTAGCCGCGCCTTGACTCCAAGGCGTCCAAGAA
CTGTCGTTTTGGGATATGGAGCTGGTGACGCTCTGTTCACACCAGGGGAG
ATGTTACAGATAGGT
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