mRNA_Ecto-sp13_S_contig14523.3476.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14523.3476.1
Unique NamemRNA_Ecto-sp13_S_contig14523.3476.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14523.3476.1 vs. uniprot
Match: A0A6H5J804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J804_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.490e-22
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:  134 DEGNRGTNRQHQFQQHTEKANLQEAKTKGGVEFVAKSVGGDLFWSVVECGTLGFPVWRARTSATPAAG 337
            DEG+ GTN QHQFQ HT KANLQEAKTKGG +F  KSVGGDLFWS+VECGTLG P WRARTSAT AAG
Sbjct:  400 DEGSGGTN-QHQFQPHTSKANLQEAKTKGGEQFFPKSVGGDLFWSMVECGTLGRPAWRARTSATLAAG 466
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BLAST of mRNA_Ecto-sp13_S_contig14523.3476.1 vs. uniprot
Match: A0A6H5K5T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.310e-19
Identity = 62/142 (43.66%), Postives = 77/142 (54.23%), Query Frame = 3 
Query:  393 AEGMNEVDAPLKKMFHDEARRPAVLFYDLACRYRRHLLVRGDQFFVATFLIVDRFHFRAHRELDCAEFNSPNQQDNPFSWSMDNNNRPSFHINSSMAESNNAWLADTGTTHSS*TRRVAGDGGRDWRCFPAG---QGQGQGG 809
            AEG  EVDA LKK+  DE RRP + FYD A  + R+L  RGD  +VAT LIV    +   + L C+ FNSPN  DNP  W++     P F+ NSSM ESNN WL+ +       T    G   R W   P G   + QG+ G
Sbjct:    8 AEGCAEVDAVLKKIVPDEDRRPTIFFYDTAYLFDRYLSRRGDLSWVATMLIVQ---YWGRKGLLCSLFNSPNDDDNPLLWNVQEA-PPEFYWNSSMGESNNGWLSGSPRE----TEEEEGHTARWWTGAPWGVRLESQGEPG 141
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BLAST of mRNA_Ecto-sp13_S_contig14523.3476.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.980e-8
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  724 TRAERDGLQEMVDAIGAAFQRAKARGKEDKVYHYIDLPSN 843
            T+AER+GLQEMV AIG AF+RAKARG +D VYHY+ LP N
Sbjct:  799 TQAEREGLQEMVTAIGDAFRRAKARGSKDPVYHYMTLPRN 838
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14523.3476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J804_9PHAE3.490e-2280.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5T4_9PHAE3.310e-1943.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE7.980e-872.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14523contigEcto-sp13_S_contig14523:1002..3429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1032
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000160.1
Cds size333
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14523.3476.1prot_Ecto-sp13_S_contig14523.3476.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14523 1300..2544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.2059019-UTR-Ecto-sp13_S_contig14523:1001..12991681462775.2059019-UTR-Ecto-sp13_S_contig14523:1001..1299Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14523 1002..1299 -
1681462775.2596297-UTR-Ecto-sp13_S_contig14523:2544..25531681462775.2596297-UTR-Ecto-sp13_S_contig14523:2544..2553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14523 2545..2553 -
1681462775.2708669-UTR-Ecto-sp13_S_contig14523:3037..34291681462775.2708669-UTR-Ecto-sp13_S_contig14523:3037..3429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14523 3038..3429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.2156866-CDS-Ecto-sp13_S_contig14523:1299..13251681462775.2156866-CDS-Ecto-sp13_S_contig14523:1299..1325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14523 1300..1325 -
1681462775.2257915-CDS-Ecto-sp13_S_contig14523:1913..20681681462775.2257915-CDS-Ecto-sp13_S_contig14523:1913..2068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14523 1914..2068 -
1681462775.241961-CDS-Ecto-sp13_S_contig14523:2392..25441681462775.241961-CDS-Ecto-sp13_S_contig14523:2392..2544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14523 2393..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14523.3476.1

>prot_Ecto-sp13_S_contig14523.3476.1 ID=prot_Ecto-sp13_S_contig14523.3476.1|Name=mRNA_Ecto-sp13_S_contig14523.3476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MNEVDAPLKKMFHDEARRPAVLFYDLACRYRRHLLVRGDQFFVATFLIVD
RFHFRAHRELDCAEFNSPNQQDNPFSWSMDNNNRPSFHINSSMAESNNAW
LADTGTTHSS*
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mRNA from alignment at Ecto-sp13_S_contig14523:1002..3429-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14523.3476.1 ID=mRNA_Ecto-sp13_S_contig14523.3476.1|Name=mRNA_Ecto-sp13_S_contig14523.3476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14523:1002..3429- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCAACCATGTNNNNNNNNNNCACACCCATAGGTCCCATACGCGTATCC
CCCACAGAGGATGCACAGATCGGACTCATATCCAAGTACCACAAACAGGA
TTATTTTGGTCAGGCTCTCAAAATTTCCTGTAGGATGAAGGTAACAGAGG
GACGAACCGACAACACCAGTTCCAACAGCACACCGAAAAGGCAAATCTGC
AGGAGGCCAAGACCAAAGGAGGAGTAGAGTTCGTTGCCAAAAGCGTCGGA
GGAGATTTGTTCTGGAGTGTGGTGGAGTGTGGCACACTAGGCTTTCCCGT
GTGGCGCGCTCGTACATCTGCCACGCCCGCAGCAGGCTGAACATCCCAAG
CAAGAGAAACAGGTCTTCCTCACCCACTAGCGCAAGATCGTGGTGAGTTT
CATGCACTCCGCGTACCGCCCGGCTGCCATCCCCCCTCGTGCTTGTCGTG
CTATGGCTGTAAGCGCCCTGCTACAACGAGCTGCTGCTCAACATTAACAC
AATCACGGCGGTCACACACTCACACCGCCGCGCGCGCTGAAAATAGGGTT
TCCAGCAAATTTCCCGATATTTTTTTTGTTTTTCTACGAAAACGGGGTTG
GCACCGAGTCGAACCGATACGATGCGGCCCGACTCTGGACAGGATCTTTT
CTACAGCAACTTAGCTTACAGGGAATTCGCCACAGGATAAACTGGACCGG
ATATTGAACGGCCTTACAGGAAATCCTGGGGAGAAACCCTAGATTAAGTC
AACACCTGCCAGGTGCGAAGTAGTGCGTGGTCCGCAGAAATGCGGTTGGT
TTTAAATTAAGTCAACGGACATCTGACAGCAAGCTGGCCTTGTGGAATTC
TATGTGGGATGGAACCGCTTTGAGAGGCGGAGGGGATGAACGAGGTCGAC
GCACCTCTGAAGAAGATGTTCCACGACGAAGCGAGACGACCGGCAGTTCT
CTTCTATGACCTTGCATGTCGTTACCGGCGACACCTTCTCGTTCGCGGAG
ATCAGTTTTTCGTGGCGACGTTCCTGATAGTAGACAGGTGGGACGTAACA
AGTTGGGCAACGCCTTATTTACATTTCGTAGCATGTATCCCGTTGAGCAC
TACCGAAAGCGCTCCTGCTCCGACCCCCGCCACCATTGGCTAGAGTTAGT
TGCTATTTTTTGCGGGTCGACCTTAGTGAGGGAGGGCGCATTTCCAATAG
ATTAATTAATGTCGTCGGGCATTGAGCAAGGTCAACAAAATTTGTACACC
TATTCAAATATCTGACCCCCACAGCTTGACCTACAACTCTTCCTACTGTG
TACTTCCGTGCACGTCTTCAGACACCCCTACTGTATTCCCTTGCACATGC
ACATGTAACAGGTTCCACTTCCGCGCACATCGTGAATTGGATTGCGCAGA
GTTCAACAGCCCGAACCAACAGGACAACCCATTTTCGTGGTCCATGGACA
ACAACAACAGGCCCTCCTTTCACATCAACTCGAGCATGGCAGAGAGCAAC
AACGCCTGGCTTGCTGGTACGTCACAATATTTCCCCCGACAGCATACAAA
CATGTGCGCATCCATAATTTGTCGTTTTACCGACAACTACATAAAATATA
ATCGTTTTACTTGATGACCTGTTGGTCGGCCTCACGTGCAGTAGTAGACG
CTGCGCGACACGTTCATGTACGGGACTGTCGGCTAAACCAAAATATGCGG
TTGACAATTCGGGAAATTCACGACAGTAGACATTACTTTCATTGTTTCAA
TGGTGATAGAGAGCTGGACAGGGCGCCTCTCACTCTCGCTCTAATATTCC
ACCATAGAACTCATGCTCTGGAGTCAGCCAGTACCGGCGAAGTCTTACAT
CTCATCGTTCTGAGGGTCACCGAGTGACAGCAGTGTTCCACCTCTCACGT
ATTATCAGGTTAAGATACCTTGCAGCGGAAGCCTGCGGTGGGTTCACCAG
AGTGGCTTACCCCGACGTGCTACCGCTGCATGTTTGTCACCAGCACCGCC
CGATGCATGAAGTAGACTTGCCAACTCCGCCCTGTGCCGAGCCTAATGAC
TGTCACACATTTCGTCTGCTTCGCCTTGTTGCCATCTTTGTCGACGACTC
TCAGACACAGGCACCACCCACTCGAGCTGAACGAGACGGGTTGCAGGAGA
TGGTGGACGCGATTGGCGCTGCTTTCCAGCGGGCCAAGGCCAGGGGCAAG
GAGGACAAGGTTTATCATTACATAGACTTGCCAAGTAACGCAGAACCATG
ATGCCCATGATTAGGAAGTTGCAAGAGGAGGACGAAGCCTCTCAGCCCGG
GACGTGGTTCGCTGGAAGCAAGTTTTTCAAAATAACAAACCAGTCCACCT
TCAAGGGGCTGATTAAAAGGGCAGAGGCACATGACCCAACTTTTAAGTGG
GCATCGTGGAAGGAGCTGTAGAGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14523:1002..3429-

>mRNA_Ecto-sp13_S_contig14523.3476.1 ID=mRNA_Ecto-sp13_S_contig14523.3476.1|Name=mRNA_Ecto-sp13_S_contig14523.3476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14523:1002..3429- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGGTCGACGCACCTCTGAAGAAGATGTTCCACGACGAAGCGAG
ACGACCGGCAGTTCTCTTCTATGACCTTGCATGTCGTTACCGGCGACACC
TTCTCGTTCGCGGAGATCAGTTTTTCGTGGCGACGTTCCTGATAGTAGAC
AGGTTCCACTTCCGCGCACATCGTGAATTGGATTGCGCAGAGTTCAACAG
CCCGAACCAACAGGACAACCCATTTTCGTGGTCCATGGACAACAACAACA
GGCCCTCCTTTCACATCAACTCGAGCATGGCAGAGAGCAACAACGCCTGG
CTTGCTGACACAGGCACCACCCACTCGAGCTGA
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