mRNA_Ecto-sp13_S_contig1386.3016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1386.3016.1
Unique NamemRNA_Ecto-sp13_S_contig1386.3016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 5.370e-188
Identity = 265/270 (98.15%), Postives = 265/270 (98.15%), Query Frame = 1
Query:    4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 813
            MNNCY PLAAPAQND KSKRRDRDGKAPNGTATKEPSL STTR DGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRE RGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK
Sbjct:    1 MNNCYKPLAAPAQNDAKSKRRDRDGKAPNGTATKEPSLASTTREDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 270          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.290e-76
Identity = 138/275 (50.18%), Postives = 179/275 (65.09%), Query Frame = 1
Query:    4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTR------GDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 810
            M NCYTP  AP                P   A +E +   ++R      GDGR   ++R+VY+D+GVV+ A+GSAY+E +HTKVICAVYGPHAQ+  D+AFSEEGQL+CD   APFA P  R E RG + D+ERELS  L+Q LE+S+++  LTK+ V V+V VL ADGG L  A TCAS+ALA+A IEL+DLV AC+      Q++LDPT +EE +  G + +A+MP S++VTQW Q GR    + A A+ELC DGC  V  MM A+L A   K
Sbjct:    1 MLNCYTPRRAP----------------PAAVAVEEQTSADSSRKRPEHRGDGRKASELRRVYLDLGVVSQASGSAYLELDHTKVICAVYGPHAQSM-DTAFSEEGQLKCDLRMAPFAQPK-RSEVRG-QTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLAQVDK 256          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.560e-71
Identity = 128/263 (48.67%), Postives = 173/263 (65.78%), Query Frame = 1
Query:   94 TATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPG---------GRREARGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCG-TQMVLDPTK---------EEEKSG----------AGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 792
            T  +E ++   +R DGR   +MR+V++DVG+++ A+GSAY+E N TKVIC + GPHA +  D  FSE+GQL+ D  YAPFA  G          RR+    ++ D ER+ S L+RQ LE+SIQ+H L KS++ V++ VLQADGGEL  A TCAS+AL+DAGIEL+DLV  CSVG  G ++++LDPT+         E+  SG          AGVMT+   P SQ+VTQWWQEG+FD + +A  L LC DGC  +HK+M+ KL
Sbjct:   13 TDEQERTIIKPSRADGRDDKEMRKVFIDVGILSCASGSAYIELNMTKVICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD)

HSP 1 Score: 206 bits (525), Expect = 1.040e-60
Identity = 123/270 (45.56%), Postives = 168/270 (62.22%), Query Frame = 1
Query:    4 MNNCYTPL-AAPAQNDGKSKRRDRDGKAPNGTATKEPS---LTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK-MMEAKL 792
            M NCY P+ A PA+  G +K +D         A  +P    L    R D  R+  D +RQ +M +GVV+ A+GSAYVEFN T+V+C+VYGP   T     FS EGQL CDF YAPFA P GRRE   G+  DE E+S++L Q L  ++ + +L K VV ++V+VL++DGGELA A  CAS+AL DA +E+YD+VTA   G   +++VLDP  +EE  G G + +A MP   +VT   Q G+ +  ++ EA++LCTD C  V K +M A L
Sbjct:    1 MQNCYFPVNAKPARAHGAAKDKD---------AAVDPIKALLEKAVRLDELRSSSDELRQAFMKLGVVSGASGSAYVEFNRTRVVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLMTASL 259          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL)

HSP 1 Score: 205 bits (522), Expect = 2.300e-60
Identity = 117/259 (45.17%), Postives = 158/259 (61.00%), Query Frame = 1
Query:    4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK 774
            M NCY P  A  +  G ++ +  D          +  +  T R D  RA  D MR  +M +GVV+ A GSAYVEFN T+V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE E+S++L Q L  ++ + +L K VV ++V+VL++DG +LA A  CAS+AL DA +E+YD+VTA S G   +Q+VLDP  EEE  G G + +A MP   Q+T   Q G+    ++ EA++LCTD C  V K
Sbjct:    1 MQNCYFPAIAKPRGGGDAQSKQDD----------QVMIDKTLRLDRIRASADEMRPAFMRLGVVSGAAGSAYVEFNRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMK 247          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN)

HSP 1 Score: 199 bits (506), Expect = 6.890e-58
Identity = 116/264 (43.94%), Postives = 156/264 (59.09%), Query Frame = 1
Query:    4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG--RAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEA 786
            M NCY P AA A     S     D         +   +  T R D   R+  +MR  +M +GVV+ A GSAYVEF+ T+V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE ELS++L Q L  ++ + +L K VV + V+VL++DGGELA A  CAS+AL DA +E+YD+VTA S     +++VLDP   EE  G G + +A MP   ++T   Q GR    ++ EA++LCT  C G +  M+ A
Sbjct:    1 MQNCYFPXAAVAPERSSSTDATSD--------AQRALIDKTLRLDRVRRSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNMLTA 254          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT)

HSP 1 Score: 194 bits (492), Expect = 5.330e-56
Identity = 112/270 (41.48%), Postives = 155/270 (57.41%), Query Frame = 1
Query:    4 MNNCYTPL------AAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 792
            M NCY PL      AAP  +D   +R D+                S T  D     +MR+ +M +G V+ A GSAYVE   T+V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  ++ +H+L K ++ V V +L+ DGG LA A  CAS+ALADA +E+YD+VTA S G     +VLDP++EEE+ G G + +A MP   +VT   Q G+    ++ EA++LCTD C G +  ++ A L
Sbjct:    1 MQNCYYPLPVQPQLAAPKDDDAPMERLDK----------------SRTSSD-----EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: L8HCU8_ACACA (3' exoribonuclease family, domain 1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCU8_ACACA)

HSP 1 Score: 191 bits (484), Expect = 1.590e-54
Identity = 103/230 (44.78%), Postives = 147/230 (63.91%), Query Frame = 1
Query:  136 DGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK*PLE 825
            DGR+P + R V++  GV++ A GSAY+E N TKVIC VYGP  QT   + +SE+G+L C F  A FA  G RR+    K  +E+ELS L+ Q LE S+++    KS + V V+VL+  GG +  A T AS+ALADAGIE+YDLV +CSVG   + ++LDP+  EEK+    + +A+MP + ++TQ  Q G  +  K  EA+ELC DGC  +++MM   L  +  +K  +E
Sbjct:   41 DGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPR-QTP-KTVYSEKGKLNCFFKLATFAENGERRKYVSDK--EEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLETAAQKLSME 266          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A5D6XTG5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTG5_9STRA)

HSP 1 Score: 188 bits (477), Expect = 9.640e-54
Identity = 110/271 (40.59%), Postives = 158/271 (58.30%), Query Frame = 1
Query:    4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKLKASTT 807
            M NCY P+AA A               P+        L S  R DG RA  D +R  ++ +GVV+ A GSAYVE   T+V+C+ +GP   T     FS +GQL CD  +APFA   GRRE    +  DE ELS +L Q L  ++ +H+L K V+ ++V+VL++DGGELA A  CAS+AL DA +E+YD+VTA + G    ++VLDP ++E+  G G + +A MP + +VT   Q G+    ++ EA++LCTD C G +  ++ A L  + T
Sbjct:    1 MQNCYFPVAAAA---------------PDARDPVRALLESARRLDGARASSDELRAAFLQLGVVSGAAGSAYVELGRTRVVCSAFGPRNDTRSRREFSNQGQLVCDVKFAPFADRVGRRER--AQDADELELSAVLAQALAPAVMLHKLPKCVMSLYVVVLESDGGELAAAINCASLALVDAAVEMYDIVTAAAAGVVNGKVVLDPCQQEQLHGDGHVVLAYMPTADKVTYMLQAGKIQHAQLQEAVDLCTDACTGVMKTLVTASLLQAAT 254          
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM)

HSP 1 Score: 187 bits (476), Expect = 1.280e-53
Identity = 98/214 (45.79%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  154 DMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 792
            +MR+ +M +G V+ A GSAYVE   T+V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  ++ +H+L K V+ + V VL+ DGG  A A  CAS+ALADA +E+YD+VTA S G   + +VLDP++EEE+ G G M +A MP   +VT   Q G+    ++ EA++LCTD C G    ++ A L
Sbjct:   36 EMRRSFMQLGAVSGAAGSAYVELGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC92_ECTSI5.370e-18898.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHR0_9STRA5.290e-7650.18Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2UZ52_9STRA2.560e-7148.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3XAM5_GLOUD1.040e-6045.56Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CTD4_PYTOL2.300e-6045.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C421_PYTIN6.890e-5843.94Exosome complex exonuclease MTR3-like protein n=2 ... [more]
D0NP71_PHYIT5.330e-5641.48Exosome complex exonuclease MTR3-like protein n=16... [more]
L8HCU8_ACACA1.590e-5444.783' exoribonuclease family, domain 1 domain contain... [more]
A0A5D6XTG5_9STRA9.640e-5440.59Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GV34_PHYRM1.280e-5345.79Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1386contigEcto-sp13_S_contig1386:6497..8867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score533.9
Seed ortholog evalue4.4e-149
Seed eggNOG ortholog2880.D8LC92
Model size1212
KEGG koko:K12587
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1068@2759
Ec32 ortholog descriptionMtr3 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-14_005640.1
Cds size813
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1386.3016.1prot_Ecto-sp13_S_contig1386.3016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1386 6893..8864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.175517-UTR-Ecto-sp13_S_contig1386:6496..68921681462739.175517-UTR-Ecto-sp13_S_contig1386:6496..6892Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1386 6497..6892 -
1681462739.2255988-UTR-Ecto-sp13_S_contig1386:8864..88671681462739.2255988-UTR-Ecto-sp13_S_contig1386:8864..8867Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1386 8865..8867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.1862125-CDS-Ecto-sp13_S_contig1386:6892..71081681462739.1862125-CDS-Ecto-sp13_S_contig1386:6892..7108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 6893..7108 -
1681462739.1940944-CDS-Ecto-sp13_S_contig1386:7494..76621681462739.1940944-CDS-Ecto-sp13_S_contig1386:7494..7662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 7495..7662 -
1681462739.2015595-CDS-Ecto-sp13_S_contig1386:7932..81301681462739.2015595-CDS-Ecto-sp13_S_contig1386:7932..8130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 7933..8130 -
1681462739.209432-CDS-Ecto-sp13_S_contig1386:8428..84971681462739.209432-CDS-Ecto-sp13_S_contig1386:8428..8497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 8429..8497 -
1681462739.2174754-CDS-Ecto-sp13_S_contig1386:8702..88641681462739.2174754-CDS-Ecto-sp13_S_contig1386:8702..8864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 8703..8864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1386.3016.1

>prot_Ecto-sp13_S_contig1386.3016.1 ID=prot_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPY
DMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQ
LQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKS
VVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQM
VLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTD
GCGCVHKMMEAKLKASTTKK*
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mRNA from alignment at Ecto-sp13_S_contig1386:6497..8867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1386.3016.1 ID=mRNA_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:6497..8867- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGAACAACTGCTACACGCCGCTTGCGGCTCCCGCTCAGAACGACGG AAAGAGTAAGCGGAGGGATCGGGACGGCAAGGCTCCCAACGGCACCGCCA CGAAGGAACCAAGCCTCACAAGCACTACCCGCGGGGATGGGCGTGCGCCA TATGACATGCGTCAGGTGTGAGCGTGCACTTGCGTCTAGCGTGATGCATC CGCTTCTTAAACCAACGCGACTCTTGGCGGTACACGCCAACGAGAAGGTC TGCCCATTGGTAAAAATACCGCAACGTTCTCTGCAATATTCCCGCTGAGC AACGGTTGTGTTGCGCATCGATTGAATGCGCGTGTAACGCCGCTGATATT GAATTTGGCGCTTGCAACAGGTGTACATGGATGTCGGGGTTGTGGCTCAC GCAACGGGGTCGGCATACGTGGAGTTTAACCACACCAAGGTAAGACCCCT CCCCACAAGCCAACGACGCGCATACACTGCTGTATGTCCCCCCTGGCTCA CCCAGCGACCAGCTCTCCACCCCTTCCCCCCCCCGAGCTGGCCACCAGGT CATGGCAGTAGTACCGCAGCGATAACCACACGCGCTGCGCCGCAAAAACG TTTGGCAGTGTAGTTTTCTTTCAACACCAAGGCCCTCTCGTGGGCTCTTA TACCGTCGTCTCCGTCGCCATCTCGCCGTGGCGAAGTATCCTTGACTCGC TTTCTTCGTACTCAACCGCCTACTATGCAACTGGCAGGTGATATGCGCTG TCTATGGGCCGCACGCGCAAACCGGAGGGGACAGCGCTTTCAGCGAAGAG GGGCAGCTCCAGTGCGATTTTTCCTACGCGCCGTTTGCGATGCCGGGAGG ACGCCGGGAAGCCAGGGGAGGGAAGAAGGACGATGAGCGGGAGCTGTCCA CCTTGTTACGACAGACCTTAGAGTCTTCCATTCAGGTAAAACCGCCGGTT AGCAAAATGGGTCTGCTTGTCCCTTTACCATGTGCCCTTTTTGGCGGCAT TATTTGGGGGGACTCGAGGCATCAATCGCTGCTGCGGCATCGGGTGTCGT CAGAGGGCTCTGGCATTGCTGTCATGATGGCGAAACACCAGCAGGTAACT TAGCTACGTGGCAAGCTGCAGTGTTTGTTCAAGCGTTCAACGATGATGCA AGCAAGCTTGCCGAAATTTCGCGCCATGTGTGGCGCCCACTTCTCCTATT CCCAGGTGCATCGACTCACCAAATCTGTCGTCGGGGTTCATGTCATGGTC CTTCAAGCAGACGGCGGGGAGCTTGCAGTTGCCACGACGTGCGCTTCAAT GGCATTAGCTGACGCAGGGATAGAGCTCTACGACCTTGTGACTGCATGCT CCGTGGGCTACTGTGGGACACAAGTGAGACCTTCCTACCGACAGGGATAA CCAACTATTGCGGCGTACCCACTTCACGATGCAACTGGCTTGATTTCTTC AGCACCTACGTCGCAACCACGTCCCACACTTGCCGCTGAAGCGGCACCTC AAAGCGGTTTGCGTTAGGACCGACCTCGGTGGCCATCTCTGTAACAATTG CCCTTACAAAGGTCACCCCACTACACCAGTAGAGCGTACGAAAGGGGAAT TTGGTCCTCGGTCCGACGAAACACACCGGTAGCACGTGTTAGCTTATGCT GTAGTTCTTATCTGGAGGAACTTGGAAGGAACGGCGTGTGTTGTCGACTA CCCTTGGTTGCGATCCATGATGTTCCGGCACACCGTCTGTGCTCACCCCA CCTCGACAGATGGTCTTGGACCCAACAAAAGAAGAGGAGAAGAGCGGGGC GGGCGTGATGACTATCGCTCTCATGCCAGGGTCGCAGCAGGTCACACAGT GGTGGCAGGAAGGACGATTTGACGGACAAAAGGTCGCAGAGGCGCTCGAG CTTTGCACAGATGGCTGCGGCTGTGTCCACAAGATGATGGAGGCCAAGCT CAAAGCTTCCACGACGAAGAAATGACCCTTAGAAGCGAATCATGTTGCAG TTGTTCGTTTCGTGTTTGGGCCGTGTTGCAAATGTATTGTGCATATGAGT GTCGTGCGTTCTATGCAGTGTTCTTTGGATGCTCTCCTTTGCCATAAAAC GTGGGGTACGTATCTAACCCCGCTCATCTTCCCCTTGCCGTATTCTCGGC ATACTCCATGGAGATCAAGTGTCCGTCGTGTCTGACAAACATGCACACCA GCGAAGCCAAACGGGGTCGTCGGCAAAAGGCCGACCATGCACGAATCTTC ACCAGGTGGATTCTCCATTCCTCGAATAGGGTTCCCGTAGCTGAGGTGGA ATCCACGATGCGGCCCCCTTGACTCACACTCACCCCGGTACGTCGAATGA AAAATCGTTTCAATCCACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1386:6497..8867-

>mRNA_Ecto-sp13_S_contig1386.3016.1 ID=mRNA_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:6497..8867- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACTGCTACACGCCGCTTGCGGCTCCCGCTCAGAACGACGGAAA
GAGTAAGCGGAGGGATCGGGACGGCAAGGCTCCCAACGGCACCGCCACGA
AGGAACCAAGCCTCACAAGCACTACCCGCGGGGATGGGCGTGCGCCATAT
GACATGCGTCAGGTGTACATGGATGTCGGGGTTGTGGCTCACGCAACGGG
GTCGGCATACGTGGAGTTTAACCACACCAAGGTGATATGCGCTGTCTATG
GGCCGCACGCGCAAACCGGAGGGGACAGCGCTTTCAGCGAAGAGGGGCAG
CTCCAGTGCGATTTTTCCTACGCGCCGTTTGCGATGCCGGGAGGACGCCG
GGAAGCCAGGGGAGGGAAGAAGGACGATGAGCGGGAGCTGTCCACCTTGT
TACGACAGACCTTAGAGTCTTCCATTCAGGTGCATCGACTCACCAAATCT
GTCGTCGGGGTTCATGTCATGGTCCTTCAAGCAGACGGCGGGGAGCTTGC
AGTTGCCACGACGTGCGCTTCAATGGCATTAGCTGACGCAGGGATAGAGC
TCTACGACCTTGTGACTGCATGCTCCGTGGGCTACTGTGGGACACAAATG
GTCTTGGACCCAACAAAAGAAGAGGAGAAGAGCGGGGCGGGCGTGATGAC
TATCGCTCTCATGCCAGGGTCGCAGCAGGTCACACAGTGGTGGCAGGAAG
GACGATTTGACGGACAAAAGGTCGCAGAGGCGCTCGAGCTTTGCACAGAT
GGCTGCGGCTGTGTCCACAAGATGATGGAGGCCAAGCTCAAAGCTTCCAC
GACGAAGAAATGA
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