mRNA_Ecto-sp13_S_contig13753.2949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13753.2949.1
Unique NamemRNA_Ecto-sp13_S_contig13753.2949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: D8LIH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH2_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.020e-60
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV
Sbjct:  405 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 509
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.290e-59
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            AAFGATGSVCATGGDDSKVKLWST+SGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV
Sbjct:  399 AAFGATGSVCATGGDDSKVKLWSTSSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 503
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A7S2WEL1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WEL1_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.450e-41
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    4 AFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A+   G + ATGGDD+KVKLWSTT+GFCFVTF+EHEAP+TA+ F  + +AV+SAS+DGTVRA DLVRY+NFRT+V P P Q TSLA+DG GEVV AGAMDPFE+
Sbjct:  385 AYSPDGQLVATGGDDAKVKLWSTTTGFCFVTFSEHEAPITALSFIGDGNAVISASMDGTVRAFDLVRYRNFRTMVAPTPVQFTSLAIDGEGEVVCAGAMDPFEI 488
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A2R5GPN5_9STRA (Guanine nucleotide-binding protein subunit beta-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPN5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.860e-39
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNA-SAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            AA+   G + ATGGDD+KVKLWSTTSGFCFVTF+EHEAPVTA+ F  +A +AVVSASLDG+VRA DLVRY+NFRT+VTP P QLT LA+DG GE+V AGAMDP ++
Sbjct:  373 AAYSPDGQLVATGGDDAKVKLWSTTSGFCFVTFSEHEAPVTALSFVGDAGNAVVSASLDGSVRAFDLVRYRNFRTMVTPTPTQLTCLAVDGQGEIVCAGAMDPPDI 478
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A2P4WX09_9STRA (Periodic tryptophan protein 2 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WX09_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.790e-39
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A++   G + ATG DD+K+KLW T SGFC+VTFTEH APVTAV+F P+  AVVSASLDGTVRA DL RYKNFR L TP+P Q  SLALD SG+VV AG+MDPF V
Sbjct:   94 ASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHSAPVTAVQFVPSGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPTQFLSLALDPSGQVVCAGSMDPFNV 198
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: H3GD86_PHYRM (Utp12 domain-containing protein n=30 Tax=Peronosporaceae TaxID=4777 RepID=H3GD86_PHYRM)

HSP 1 Score: 146 bits (369), Expect = 1.200e-38
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A++   G + ATG DD+K+KLW T SGFC+VTFTEH APVTAV+FTP+  AVVSASLDGTVRA DL RYKNFR L TP+P Q  SLALD SG+VV AG+MDPF V
Sbjct:  385 ASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHSAPVTAVQFTPSGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPTQFLSLALDPSGQVVCAGSMDPFNV 489
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A2D4BGV4_PYTIN (Periodic tryptophan protein 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGV4_PYTIN)

HSP 1 Score: 146 bits (368), Expect = 1.580e-38
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    4 AFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A+   G + ATG DD+K+KLW TTSGFC+VTFTEH APVT V FTPN  AVVSASLDGTVRA DL RYKNFR L TP+P Q  SLALD SG++V AG MDPF +
Sbjct:  351 AYSPDGRLLATGADDAKLKLWDTTSGFCYVTFTEHSAPVTGVAFTPNGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPVQFISLALDPSGQLVCAGTMDPFNI 454
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: W7T6B9_9STRA (Small nucleolar ribonucleoprotein complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6B9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.310e-38
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    4 AFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A+   G V ATGG+D+KVKLWST SGF FVTFT H+APVTA+ F  +  AV+SASLDGTVRAHDL+RY+NFRTL TP P QL SLA+D SGEVV AG+ +PFEV
Sbjct:  396 AYSPDGQVMATGGEDAKVKLWSTASGFSFVTFTAHDAPVTALAFLGSGQAVLSASLDGTVRAHDLLRYRNFRTLTTPAPTQLLSLAVDPSGEVVCAGSSEPFEV 499
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A3R7K0K3_9STRA (Utp12 domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0K3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.660e-38
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            A++   G + ATG DD+K+KLW T SGFC+VTFTEH APVTAV+F P+  AVVSASLDGTVRA DL RYKNFR L TP+P Q  SLALD SG+VV AG+MDPF V
Sbjct:  370 ASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHSAPVTAVQFVPSGQAVVSASLDGTVRAFDLNRYKNFRVLTTPEPVQFLSLALDPSGQVVCAGSMDPFNV 474
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BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Match: A0A8K1CJB2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJB2_PYTOL)

HSP 1 Score: 144 bits (363), Expect = 7.740e-38
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:   19 GSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEV 315
            G + ATG DD+K+KLW TTSGFC+VTF EH+APVT V+FTPN  AVVSASLDGTVRA DL RYKNFR + TP+P Q  SLALD SG++V AG +DPF +
Sbjct:  367 GRIIATGADDAKLKLWDTTSGFCYVTFNEHQAPVTGVKFTPNGQAVVSASLDGTVRAFDLNRYKNFRVMTTPEPVQFISLALDLSGQIVCAGTLDPFNI 465
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13753.2949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIH2_ECTSI1.020e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCN5_9PHAE5.290e-5999.05Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2WEL1_9STRA4.450e-4170.19Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GPN5_9STRA1.860e-3971.70Guanine nucleotide-binding protein subunit beta-1 ... [more]
A0A2P4WX09_9STRA7.790e-3968.57Periodic tryptophan protein 2 (Fragment) n=1 Tax=P... [more]
H3GD86_PHYRM1.200e-3869.52Utp12 domain-containing protein n=30 Tax=Peronospo... [more]
A0A2D4BGV4_PYTIN1.580e-3869.23Periodic tryptophan protein 2 n=1 Tax=Pythium insi... [more]
W7T6B9_9STRA4.310e-3869.23Small nucleolar ribonucleoprotein complex subunit ... [more]
A0A3R7K0K3_9STRA5.660e-3868.57Utp12 domain-containing protein n=2 Tax=Phytophtho... [more]
A0A8K1CJB2_PYTOL7.740e-3868.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13753contigEcto-sp13_S_contig13753:4..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score206.8
Seed ortholog evalue4.9e-51
Seed eggNOG ortholog2880.D8LIH2
Preferred namePWP2
Model size321
KEGG koko:K08852,ko:K14558
KEGG Pathwayko03008,ko04140,ko04141,ko04210,ko04932,ko05010,map03008,map04140,map04141,map04210,map04932,map05010
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000151,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000920,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007163,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010119,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030010,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034388,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080008,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1902494,GO:1990234,GO:1990904
Exons3
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0291@1,KOG0291@2759
EC2.7.11.1
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.0765831-CDS-Ecto-sp13_S_contig13753:3..571681462734.0765831-CDS-Ecto-sp13_S_contig13753:3..57Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13753 4..57 +
1681462734.0897982-CDS-Ecto-sp13_S_contig13753:749..8981681462734.0897982-CDS-Ecto-sp13_S_contig13753:749..898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13753 750..898 +
1681462734.1062226-CDS-Ecto-sp13_S_contig13753:1223..13411681462734.1062226-CDS-Ecto-sp13_S_contig13753:1223..1341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13753 1224..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13753.2949.1prot_Ecto-sp13_S_contig13753.2949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13753 4..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13753.2949.1

>prot_Ecto-sp13_S_contig13753.2949.1 ID=prot_Ecto-sp13_S_contig13753.2949.1|Name=mRNA_Ecto-sp13_S_contig13753.2949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
AAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNAS
AVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAM
DPFEVK*
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mRNA from alignment at Ecto-sp13_S_contig13753:4..1341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13753.2949.1 ID=mRNA_Ecto-sp13_S_contig13753.2949.1|Name=mRNA_Ecto-sp13_S_contig13753.2949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1338bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13753:4..1341+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCTTCGGGGCAACGGGGTCGGTGTGCGCCACGGGGGGGGACGATAG
CAAGGTTTGTCCATTCACAAGAATAAACCAGAGTATTGTAGTTGCTCTGG
TTCTTGAACGAAGTGCTCAACTTTAATGTGTTTTTCTGTCTCTCTGGTGG
TACGAACCGTTTGCTCTTTTTCTTGAGTGTGCTTGTTGGATGCGACGGGT
GCAGTGTGCATGATCGGTTGGTTACGCTTCAGTTTGTTGTTTGCTCTCGA
TGCGCTACTTGCTAGTTGTGTCGTACTTGCTAGTTGTGTCGCTTGGGAGC
CACCTTGGGCAAGTGTGCATCGGTGTGTGTCTCGGGGGGAGTGGCAGCAA
CGATTTGCCCTGCTCGAGAATGTGTTACTATTGCTTTTGTATTGGCAGCC
ACTTGCGCTGTTGGCACTCACCAAGCTGTATTTTGGAAGGCGGTTGTAGC
CCTTTCTTCTTTACCGAAAGCAGTTACAACCAATTGAACCTCAACCACCC
GTTAACGGTGTAGACGTATTTCTTAGCTTATCAACATAGTAAATACGAAA
GTGATTTCACAACAAGGTAATACTTTCTCTTGCTGCGTCGCGAAGATGAG
GTACTGCGTTCGACGACCATTCTGCTTCACCTCCCCTCCGTCTTGAACGA
AAGGACTACCCGCAACTCGCTTCCAAGGTACCCCAGCTCCCGTTGGCAGG
CTCACCAACCTTATGCGGCTCGTTCTGATTCTGTGTTGTTGTTCAGGTGA
AGCTGTGGTCAACAACGAGCGGCTTCTGCTTCGTTACTTTCACGGAGCAC
GAGGCTCCCGTTACCGCCGTCCGGTTCACGCCTAATGCTTCGGCCGTGGT
GTCGGCTTCGCTCGACGGGACTGTCAGAGCTCACGACCTCGTGAGGTGAG
TGAGGTACGGGAAACTGCGGTTTGGGCAACTTTTGTGATGTTGATGGTGG
TGTTGCTGTTGCTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTTGTTGT
GATTGTTTTGATTATTGTTGTTGTTAAAGAAGTGGTGCTGTCGTTGTGGT
TGTTGTTGTTAGTGAAGTGATGTTGTTGTTGTCATTGTTGTTGTTAATGA
CGTGGTTTGTTGTTGTAGTATTCATCGCAGTCGTCGTTGCTATCGCTGAC
GGGTCGTCCAATTTACAAGCAAGGAAAACGGCAACCCCCACCCCACCCCC
TCCCAACCCCCCCCTGCCAGATACAAGAACTTCCGGACGTTGGTCACTCC
TCAGCCGGCGCAGCTGACATCGTTGGCGCTAGACGGGTCGGGGGAGGTGG
TGGTGGCCGGGGCGATGGATCCTTTCGAGGTGAAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13753:4..1341+

>mRNA_Ecto-sp13_S_contig13753.2949.1 ID=mRNA_Ecto-sp13_S_contig13753.2949.1|Name=mRNA_Ecto-sp13_S_contig13753.2949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13753:4..1341+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCTTCGGGGCAACGGGGTCGGTGTGCGCCACGGGGGGGGACGATAG
CAAGGTGAAGCTGTGGTCAACAACGAGCGGCTTCTGCTTCGTTACTTTCA
CGGAGCACGAGGCTCCCGTTACCGCCGTCCGGTTCACGCCTAATGCTTCG
GCCGTGGTGTCGGCTTCGCTCGACGGGACTGTCAGAGCTCACGACCTCGT
GAGATACAAGAACTTCCGGACGTTGGTCACTCCTCAGCCGGCGCAGCTGA
CATCGTTGGCGCTAGACGGGTCGGGGGAGGTGGTGGTGGCCGGGGCGATG
GATCCTTTCGAGGTGAAATAA
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