mRNA_Ecto-sp13_S_contig13484.2775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13484.2775.1
Unique NamemRNA_Ecto-sp13_S_contig13484.2775.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13484.2775.1 vs. uniprot
Match: D7FS42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS42_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.930e-53
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 RLSEKKVPPGRLKKSEFLRGYVAIDLALGTLGIPFSKKKLLEKANISKQKAYDDTYQHLRNVLGARVAPMGVSMANIAVKFTGASVERSMALLQRFQ 291
            RLSEKKVPPGRLKK EFLRGYVAIDLALGTLGIPFSKKKLLEKANISKQKAYDDTYQ+LRNVLGARVAPMGVSMANIAVKFTGASVERSMALLQRFQ
Sbjct:   35 RLSEKKVPPGRLKK-EFLRGYVAIDLALGTLGIPFSKKKLLEKANISKQKAYDDTYQYLRNVLGARVAPMGVSMANIAVKFTGASVERSMALLQRFQ 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13484.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS42_ECTSI1.930e-5397.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13484contigEcto-sp13_S_contig13484:61..1927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004430.2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.8672242-CDS-Ecto-sp13_S_contig13484:61..2021681462719.8672242-CDS-Ecto-sp13_S_contig13484:61..202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13484 62..202 -
1681462719.876338-CDS-Ecto-sp13_S_contig13484:1109..11731681462719.876338-CDS-Ecto-sp13_S_contig13484:1109..1173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13484 1110..1173 -
1681462719.8840985-CDS-Ecto-sp13_S_contig13484:1841..19271681462719.8840985-CDS-Ecto-sp13_S_contig13484:1841..1927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13484 1842..1927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13484.2775.1prot_Ecto-sp13_S_contig13484.2775.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13484 62..1927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13484.2775.1

>prot_Ecto-sp13_S_contig13484.2775.1 ID=prot_Ecto-sp13_S_contig13484.2775.1|Name=mRNA_Ecto-sp13_S_contig13484.2775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
RLSEKKVPPGRLKKSEFLRGYVAIDLALGTLGIPFSKKKLLEKANISKQK
AYDDTYQHLRNVLGARVAPMGVSMANIAVKFTGASVERSMALLQRFQ
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mRNA from alignment at Ecto-sp13_S_contig13484:61..1927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13484.2775.1 ID=mRNA_Ecto-sp13_S_contig13484.2775.1|Name=mRNA_Ecto-sp13_S_contig13484.2775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13484:61..1927- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTGTCGGAAAAGAAAGTCCCGCCGGGCAGGTTGAAGAAGAGCGAGTT
CCTGAGAGGATATGTCGCGATAGATCTCGCACTGGGGTGAGTTTCAGGAA
TGAAAATTAAAAACAATCAAATACAAGGAGAACCTCATTGTATCCCCCCG
CCTGGTAGGTCTATCTACTGCTCGAAGTGCAGTTCTGCCTGATGGAAGTT
GGTTTGTATAGGGGTGCGACGGAGTGGTAGACCGGTTATGTATGGATTCC
GGAAAAGAAACGAGCTGGCACAAACGATGGAAAGCAGGCGTTGGGATGGG
GGGGAGGGTGAAAGTTTTTTTTGTCTCACACCATGAACAAACAACGTGTT
TTCTTTGCCTGCATGGCGCTTGTAACCAAGAGATTTCTCTACTTGTGAGC
AGCAGTAAACGCTGACTACGTTTCGTGTGTTTCCATGTTTTAATCGTCCG
CAAATCATACGGGTGGCACATGAGATGAGGCAAAGTACACTGGGTAAATT
CATGGGTTTCCGGAAACCAACGGTTGGTGTGTGTTGGTGCTTCGTCAGCC
GTATTTTTTTACTCCGAAACGCCCTGGTTGTTACAGTTTCATTCCCGAGA
CTTTCCAAGGATTCTACTGAGTAAAAAACTGGAAGAGAACAAAAAAGACG
ATAGTGCACACATGTATGCATACCTTGTTCTGGTGAATGTGTTGACCTCT
GCCTGTTGTAATAAGTATTCACTTGTTCTTGTTCGTTGCATGCACAATTT
CCAGAACGCTGGGGATCCCGTTCTCGAAGAAGAAGCTACTGGAGAAGGCG
AACATCTCCAAACAGAAGGTGTGAGCTTTGGGGTGGGCTACCAATGCACG
CACCATGCCCTATAGCTATGGCGCGCACGAACGCGAGTCTCGAGAGCTCT
GATGGGTGCTTTCTAGCCTTATGATCGGTCTTATTGGCGAAGGAAAATTC
CCCGTATTTTCTGTCCAATGTTGATTTAGTCATCTTCTTGTCTTGTAGGT
ATTGGTCAACACTATGGAATCAGTTGTGTCTTCATATGCATACTGCTTTC
AACCCGAACTTGTCCGGCTACAAATGCGGTTGTCTGGCGATGACAGGAGA
AAGCGAACAAGTCCTCAACCAGCTAGCCTGAAAAAATTGCTCCGATACAA
AGATATTTTGGGCAGCTGAATATTTAGAGGACGACCCGAATGGTGCCCCT
CTTGCCCTTCGTGAAGCAGCCCCAATGCACCGAGTATACCGCTGGGTTTA
TGCTCGCACAATCCCACTTATGAGCATGACAACCTCTCCGTCCATCGCGA
GACGTTTGCGTTTGACCTACGCTCGCCACGCACGACCTTTGATATCAGCA
GGCGACCGACCAACGCGTAGCTACACAAGTCACCTTCGCTCACACAGACC
AACTTTACTCCTTGTGTAGGCGGAATATTTAGGCGGCTCCTACAAAGACG
GAGTGCTTCTTCGAAGCCTTCTTTGTTGGCTTTTTTTCGCGAGCTTCTGG
TGTCCTTGTCGTCGTGCTCTCCACAAACACACGTGCCTTTTTTAGACCTC
TCTCCTCCTCTTGAAAAGGCACAAACAGGCATCTCCGTGGACACACAACA
ACAACCAATACAAAGCACAAAACAAAATCTACAAGAATGCATCGGCCCAA
ACCCCCCCCCTTGCCACACAAAACACTGTTCCGCTATCCTTGATTGTCGG
CCGTCCACCGCCACGGTGCTTCCAGGCGTACGATGACACCTACCAACACC
TCAGGAACGTGCTGGGCGCGCGGGTGGCTCCCATGGGCGTGAGCATGGCT
AACATCGCGGTCAAGTTCACGGGGGCTAGCGTGGAGCGGTCGATGGCGCT
GCTCCAAAGGTTTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13484:61..1927-

>mRNA_Ecto-sp13_S_contig13484.2775.1 ID=mRNA_Ecto-sp13_S_contig13484.2775.1|Name=mRNA_Ecto-sp13_S_contig13484.2775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13484:61..1927- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTGTCGGAAAAGAAAGTCCCGCCGGGCAGGTTGAAGAAGAGCGAGTT
CCTGAGAGGATATGTCGCGATAGATCTCGCACTGGGAACGCTGGGGATCC
CGTTCTCGAAGAAGAAGCTACTGGAGAAGGCGAACATCTCCAAACAGAAG
GCGTACGATGACACCTACCAACACCTCAGGAACGTGCTGGGCGCGCGGGT
GGCTCCCATGGGCGTGAGCATGGCTAACATCGCGGTCAAGTTCACGGGGG
CTAGCGTGGAGCGGTCGATGGCGCTGCTCCAAAGGTTTCAG
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