mRNA_Ecto-sp13_S_contig13454.2753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13454.2753.1
Unique NamemRNA_Ecto-sp13_S_contig13454.2753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13454.2753.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.220e-11
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  139 SAGNSTTGNFTSGNVSMAGDEAMAVVTVSIAGSPTLVRTPAPAGQAPKSESE 294
            SAGNSTT       VSMAGDEAM VVTVSIAGS TLV+TPAPAGQAP+SES+
Sbjct:   76 SAGNSTTXXXXXXXVSMAGDEAMGVVTVSIAGSATLVQTPAPAGQAPESESD 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13454.2753.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  139 SAGNSTTGNFTSGNVSMAGDEAMAVVTVSIAGSPTLVRTPAPAGQAPKSESESAGHT 309
            SAGNS           M GDEAM VV+VSIAGS TLV+TPAPAGQAP+SES  + +T
Sbjct:  244 SAGNSXXXXXXXXXXXMGGDEAMGVVSVSIAGSATLVQTPAPAGQAPESESGRSKYT 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13454.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6U0_ECTSI7.220e-1176.92REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JDC0_9PHAE1.090e-661.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13454contigEcto-sp13_S_contig13454:3311..4150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.4456096-CDS-Ecto-sp13_S_contig13454:3311..33831681462718.4456096-CDS-Ecto-sp13_S_contig13454:3311..3383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 3312..3383 -
1681462718.4561348-CDS-Ecto-sp13_S_contig13454:3859..41501681462718.4561348-CDS-Ecto-sp13_S_contig13454:3859..4150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 3860..4150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13454.2753.1prot_Ecto-sp13_S_contig13454.2753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13454 3312..4150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13454.2753.1

>prot_Ecto-sp13_S_contig13454.2753.1 ID=prot_Ecto-sp13_S_contig13454.2753.1|Name=mRNA_Ecto-sp13_S_contig13454.2753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
NFTTPAPTAIGNFTTPAPTAIGNITTPAPTFAGNFSTPSPTVVGNFSAGN
STTGNFTSGNVSMAGDEAMAVVTVSIAGSPTLVRTPAPAGQAPKSESESA
GHTRFLQEDKATTTCDMYTCP
back to top

mRNA from alignment at Ecto-sp13_S_contig13454:3311..4150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13454.2753.1 ID=mRNA_Ecto-sp13_S_contig13454.2753.1|Name=mRNA_Ecto-sp13_S_contig13454.2753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:3311..4150- (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTTACTACACCTGCTCCGACAGCGATCGGAAACTTCACAACGCCTGC
TCCGACAGCGATCGGAAACATCACTACGCCCGCTCCCACGTTCGCGGGAA
ATTTTTCAACGCCCTCGCCAACGGTCGTAGGCAATTTTTCAGCAGGAAAT
TCAACAACAGGAAACTTTACGTCAGGCAACGTCTCGATGGCGGGAGACGA
GGCAATGGCTGTAGTAACCGTCAGTATTGCCGGCTCGCCGACGCTTGTTC
GGACACCTGCTCCTGCGGGACAGGCACCGAAATCGGAATCGGTGAGCGTG
TTCTCTGCACGCAGATGTATCTCGTGTCATAGTGTGGCGGTAGTCCTACA
CTCTCGACGTGAATATTGTTTCGCTTTTTGATTTGTCTAGACAGCGTTTC
GGGCGTCGGATGTGGGTGCAATATTGCTGATGTTCGTTATCAGACGTGCC
GCGGGTGGACGAAACAGGCTCCTACCCATATTCGTAGTGGTCCGTCCTAG
TTTGAAAGAGATGGTGTTCGCGTGACCCTGAAGTCTATGTTTCGTTGTCT
GTTGTGTGATGTGTTCGCCAACAAAAGCCTTGTAAAATGCTTCTATGATG
TAGACAACAACAGAAATGTCATCCCGTCTTCGTCCATCCCAACTCCCACA
AGTCAAGTGCTCGACAAAGACATATTCTGTGCCTGTACAGGTGTTGAATG
AATGTGCTGTGATGTGGTTTGAAACAAGTCGAACCGCGTCACCCCACCCC
GTCGTTGACTACGCCAGGAGTCGGCGGGGCATACTCGATTCTTGCAGGAG
GACAAAGCGACAACCACATGTGACATGTACACGTGCCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13454:3311..4150-

>mRNA_Ecto-sp13_S_contig13454.2753.1 ID=mRNA_Ecto-sp13_S_contig13454.2753.1|Name=mRNA_Ecto-sp13_S_contig13454.2753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:3311..4150- (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTTACTACACCTGCTCCGACAGCGATCGGAAACTTCACAACGCCTGC
TCCGACAGCGATCGGAAACATCACTACGCCCGCTCCCACGTTCGCGGGAA
ATTTTTCAACGCCCTCGCCAACGGTCGTAGGCAATTTTTCAGCAGGAAAT
TCAACAACAGGAAACTTTACGTCAGGCAACGTCTCGATGGCGGGAGACGA
GGCAATGGCTGTAGTAACCGTCAGTATTGCCGGCTCGCCGACGCTTGTTC
GGACACCTGCTCCTGCGGGACAGGCACCGAAATCGGAATCGGAGTCGGCG
GGGCATACTCGATTCTTGCAGGAGGACAAAGCGACAACCACATGTGACAT
GTACACGTGCCCG
back to top