mRNA_Ecto-sp13_S_contig13399.2717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13399.2717.1
Unique NamemRNA_Ecto-sp13_S_contig13399.2717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13399.2717.1 vs. uniprot
Match: A0A6H5K1J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J6_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 2.040e-113
Identity = 164/171 (95.91%), Postives = 170/171 (99.42%), Query Frame = 1 
Query:    1 SRGATIATIVVHAVALLAFGWIAWSIWLASLISFIMGGILLCQFNKCTYIVAGSLYILGCIFDLVAMAAWIALATSDNYYYNGTQLTSAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQVMAPNHGVQMKHHAPQAQPQHVGHTQAPPPYSGNV 513
            SRGATIA+IVVHA+ALLAFGWIAWS+WLASLISFIMGGILLCQFNKCTYIVAGSL+ILGCIFDLVAMAAWIALATSDNYYYNGTQLTSAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQV APNHGVQMKHHAPQAQPQ+VGHTQAPPPYSG+V
Sbjct:   28 SRGATIASIVVHAIALLAFGWIAWSVWLASLISFIMGGILLCQFNKCTYIVAGSLFILGCIFDLVAMAAWIALATSDNYYYNGTQLTSAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQVTAPNHGVQMKHHAPQAQPQNVGHTQAPPPYSGDV 198
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BLAST of mRNA_Ecto-sp13_S_contig13399.2717.1 vs. uniprot
Match: D7G5D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D4_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 6.980e-110
Identity = 158/171 (92.40%), Postives = 166/171 (97.08%), Query Frame = 1 
Query:    1 SRGATIATIVVHAVALLAFGWIAWSIWLASLISFIMGGILLCQFNKCTYIVAGSLYILGCIFDLVAMAAWIALATSDNYYYNGTQLTSAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQVMAPNHGVQMKHHAPQAQPQHVGHTQAPPPYSGNV 513
            SRGATIATIVVHA+ALLAFGWI W IWLASLISFIMGGILLCQFNKCTYIVAGSL+ILGCIFDLV+MAAWIA ATSDNYYYNG++L+SAVGWFALPAALGALSFI+AIVFIFLAICNWEKSGAPDAMGPPM GGAQVMAPNHGVQMKHHAPQAQPQ+VGH QAPPPYSGNV
Sbjct:   40 SRGATIATIVVHAIALLAFGWILWGIWLASLISFIMGGILLCQFNKCTYIVAGSLFILGCIFDLVSMAAWIAYATSDNYYYNGSELSSAVGWFALPAALGALSFIVAIVFIFLAICNWEKSGAPDAMGPPMPGGAQVMAPNHGVQMKHHAPQAQPQYVGHAQAPPPYSGNV 210
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BLAST of mRNA_Ecto-sp13_S_contig13399.2717.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.960e-20
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 1 
Query:    1 SRGATIATIVVHAVALLAFGWI-AWSIWLASLISFIMGGILLCQFNKCTYIVAGSLYILGCIFDLVAMAAWIALATS--DNYYYNGTQLT------------SAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDA 378
            +R   I  I+VH  ALL FGW+  W  W+AS+++FIM G+LLC +++C YI  G  + +  +FD++ +  WIA+  +  D+YY                   + + WFAL   LGALS  +  VF F ++C W+ +G+P A
Sbjct:    9 ARACAICAIIVHVGALLVFGWLWVWQ-WIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPAA 148
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BLAST of mRNA_Ecto-sp13_S_contig13399.2717.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.780e-9
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1 
Query:    1 SRGATIATIVVHAVAL-LAFGWIAWSIWLASLISFIMGGILLCQFNKCTYIVAGSLYILGCIFDLVAMAAWIA----LATSDNYYYNGTQL----------TSAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMA 396
            +RG  I +IV+HA++  L  G+  W    A  I+F+MGG+LLC + +  Y++    + L  +FD++A+  WI     +  SD+ Y    Q+          ++ + W A+P  LGA++  +  +F F AI  W+  G       P+A
Sbjct:   39 ARGCAILSIVIHAISFYLGGGFFVWQR-NACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIFDSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHVPVA 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13399.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K1J6_9PHAE2.040e-11395.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D4_ECTSI6.980e-11092.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAL4_9PHAE3.960e-2036.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS2_9PHAE8.780e-929.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13399contigEcto-sp13_S_contig13399:2331..4343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size516
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008670.1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.058991-CDS-Ecto-sp13_S_contig13399:2330..25391681462716.058991-CDS-Ecto-sp13_S_contig13399:2330..2539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13399 2331..2539 +
1681462716.0706687-CDS-Ecto-sp13_S_contig13399:3004..32031681462716.0706687-CDS-Ecto-sp13_S_contig13399:3004..3203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13399 3005..3203 +
1681462716.080935-CDS-Ecto-sp13_S_contig13399:4235..43431681462716.080935-CDS-Ecto-sp13_S_contig13399:4235..4343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13399 4236..4343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13399.2717.1prot_Ecto-sp13_S_contig13399.2717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13399 2331..4343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13399.2717.1

>prot_Ecto-sp13_S_contig13399.2717.1 ID=prot_Ecto-sp13_S_contig13399.2717.1|Name=mRNA_Ecto-sp13_S_contig13399.2717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
SRGATIATIVVHAVALLAFGWIAWSIWLASLISFIMGGILLCQFNKCTYI
VAGSLYILGCIFDLVAMAAWIALATSDNYYYNGTQLTSAVGWFALPAALG
ALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQVMAPNHGVQMKHHA
PQAQPQHVGHTQAPPPYSGNV*
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mRNA from alignment at Ecto-sp13_S_contig13399:2331..4343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13399.2717.1 ID=mRNA_Ecto-sp13_S_contig13399.2717.1|Name=mRNA_Ecto-sp13_S_contig13399.2717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13399:2331..4343+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGGGGAGCCACCATCGCCACCATCGTCGTCCATGCGGTCGCCCTCCT
AGCGTTCGGCTGGATTGCGTGGAGCATTTGGCTGGCGAGTCTGATCAGCT
TCATCATGGGAGGGATCCTCCTGTGCCAGTTCAACAAGTGCACATACATC
GTCGCTGGCTCCCTGTACATCCTCGGGTGCATCTTTGACCTGGTCGCGAT
GGCAGCTTGGTGAGATTTCGGGTGCAAACAGAATCTCAGCTCACGTCTCC
ATGTTCTTCTCGATTTTGTCGCCAAATCAGAATGCTACGCTTTGATTTAC
CCCGTATCATATAATAATTTGAACTGCACCTCTGAGTGCAGTGCAGCCCG
GGAAATTTTCTCAGAAGCACGCCCGTTTGAATGTGTAGCGATAGACCCCC
CCCCGCCGCCGCTTTATTTTCGTCCGACGCGGGGCTGAGGTGGGAAAACG
GTTGGCAGGACTACTACTGCTGTCGCACAGTTTTTTCGAAATATTGCACA
CGACCCAACGGGGCCGTGAAATATCACAGGACAACTTGGCACCAAGTAGA
GAGTACGGTCAAGTTGCGGACAGAAGAGAGGCCTGTCGGCGAACCCGTGG
CGTGAGTAGAGGATTGACGCTTGATTCTTCAGCCCCTGAGTTCCCGACCC
TCACCTCTGTCCTCGCCATTCCAGGATCGCCCTTGCAACATCAGACAACT
ACTACTACAACGGCACCCAGCTCACAAGCGCCGTCGGGTGGTTCGCTCTG
CCCGCTGCGCTCGGCGCCTTGTCCTTCATCATCGCGATCGTGTTTATCTT
CCTTGCTATATGCAACTGGGAGAAGAGCGGCGCCCCAGACGCGATGGGCC
CCCCCATGGCCGGAGGTGCCCAAGTGAGTTTTCGCATAAGAGCACGGAGT
GAGATGAAAAGGAATCGTCGGTGGTGTCTTGTCCGTTACGACGGGGGGGA
GCGCGAAAAACGTTAGGATCTTTCCTCCACAAAACTCGTACACCATCAGC
GACATGTAATTTCCATACACGTAGTAAGGATCCGCAATGTTCACAGTGTT
TCATGATCGACGGTACCTGTCCGCCACGATCGTCTGCATGTCGGCAGTGT
CTGGCGGCGGTGACTCCCCCGGCGGTACGGTCGATCTTGATTCGATTGCC
CCTCAACCTATATGTTTTTGTGACTGTACGCTTGAAGAATGCACCCGGGG
GGTGTGGCGGGTAACGTCGAGTGTTGTCGTTTTCTGTCGTTGCTGCGGAT
TTCCTGGCACGAGCTCTTTTCATTTCTCGATAAGATTTGGCCCCTCACGA
ACCCACGCAATCGAGCGGATCCCACTTTACTTATGTCGGGGATTCCCTCG
ATGGCGCAATGGGATCGTGGCGAATTTGACAGCGTCACCACCATTCCGAA
CTACGATACCAAGCCTTGTATGTGGCATGTGGTTTACTTCCTGTACCGAA
GATCGAATGCCTGCCCTCGGAAGTGGATAAAAATCCTTAGCAGGTGACTC
AACGTGGAGCAGAACTTGCTTGGATGAACCCTAATTTCCCTTGCTCGTGG
GAATCACTCCTCCAAAAGGAGGGTGGAGAGGTTAGCGATGTGCTTATCGG
GCTCGAGACCAGGATAAGACTGAGAAAATGTCGGACTTCACATATTTTGA
GTAATCCAAGAAATGCTGATTGGAGCCTCCCATCTGTGCCACTCTATTTC
GATGCCAATCGCTTATCTGACGATTCCATGACTTCTCTGCAACCTTGTCT
ACTGAAACATGAGCAGCGAAAACGCGTCGTTGTATGAGCGTAAACCCCCC
GGGCCCCACTCTCTATCTCGCGATTCCCCGCCTCATGCGCATGGCGCCAT
CCTCAAACACTAACCGCCGTCTTCCGTTCCTCCCTACTGGAATGCAATGC
GACAGGTCATGGCACCCAACCACGGCGTCCAGATGAAGCACCACGCGCCT
CAGGCTCAGCCTCAACATGTTGGCCACACCCAGGCACCACCTCCGTACAG
CGGAAACGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13399:2331..4343+

>mRNA_Ecto-sp13_S_contig13399.2717.1 ID=mRNA_Ecto-sp13_S_contig13399.2717.1|Name=mRNA_Ecto-sp13_S_contig13399.2717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13399:2331..4343+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGGGGAGCCACCATCGCCACCATCGTCGTCCATGCGGTCGCCCTCCT
AGCGTTCGGCTGGATTGCGTGGAGCATTTGGCTGGCGAGTCTGATCAGCT
TCATCATGGGAGGGATCCTCCTGTGCCAGTTCAACAAGTGCACATACATC
GTCGCTGGCTCCCTGTACATCCTCGGGTGCATCTTTGACCTGGTCGCGAT
GGCAGCTTGGATCGCCCTTGCAACATCAGACAACTACTACTACAACGGCA
CCCAGCTCACAAGCGCCGTCGGGTGGTTCGCTCTGCCCGCTGCGCTCGGC
GCCTTGTCCTTCATCATCGCGATCGTGTTTATCTTCCTTGCTATATGCAA
CTGGGAGAAGAGCGGCGCCCCAGACGCGATGGGCCCCCCCATGGCCGGAG
GTGCCCAAGTCATGGCACCCAACCACGGCGTCCAGATGAAGCACCACGCG
CCTCAGGCTCAGCCTCAACATGTTGGCCACACCCAGGCACCACCTCCGTA
CAGCGGAAACGTGTGA
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