mRNA_Ecto-sp13_S_contig13394.2715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig13394.2715.1
Unique Name	mRNA_Ecto-sp13_S_contig13394.2715.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 704 bits (1816), Expect = 1.370e-250
Identity = 352/422 (83.41%), Postives = 361/422 (85.55%), Query Frame = 1

Query:    1 LLVDTGASETMFDNRLIPDGNLHNYTQRNSPKIVDVAGESQLKGTATGILHSTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTIQGK----------------------------------------TRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLD 1146
            LLVDTGASE MFDNRLIPDGNLH+YTQRNSPKIVDVAGE QLKGTATGILH TVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLK+GLRCV E+STPHLTIQGK                                        T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT T VDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACK+TDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KL NKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLD
Sbjct:  208 LLVDTGASEPMFDNRLIPDGNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLD 629

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BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 654 bits (1688), Expect = 1.950e-229
Identity = 358/545 (65.69%), Postives = 368/545 (67.52%), Query Frame = 1

Query:    7 VDTGASETMFDNRLIPDGNLHNYTQRNSPKIVDVAGESQLKGTATGILHSTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTIQGK----------------------------------------TRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTG--------------------------------------------------------------SELRNYCKKSA--------------------------------------IKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            V+TGASETM DNRLIPDGNLH+YTQRNSPKIV VAG  QLKGTATGILH TVKDNRGQQLRVRIQG IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLT QGK                                        T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVI NMGPVNPPAKYKGG FPY  KITDDYTKMK+VYLLRKKSDTTE VHTYNMCV AAGGYRIETIRCDKGGENTG                                                              + L N    SA                                      IKLE+AATNTPQQ+GVSERDGQTLA V +C LKDG FPPSM GELML  AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVI ARAFVHHE YRKKLDDRAFE KLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:  175 VNTGASETMLDNRLIPDGNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTYNMCVVAAGGYRIETIRCDKGGENTGWIRISGLLQEFSYIKLEFAATNTPQQVGVSERDGQTLAGVIRCLLKDGYFPPSMCGELMLPAAYLLNRSPHSALGGAXAAGGYRIETIRCDKGGENTGWIRISGLLQEFSYIKLEFAATNTPQQVGVSERDGQTLAGVIRCLLKDGYFPPSMCGELMLPAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIRARAFVHHEKYRKKLDDRAFEAKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 719

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BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 640 bits (1650), Expect = 1.420e-224
Identity = 324/398 (81.41%), Postives = 329/398 (82.66%), Query Frame = 1

Query:  121 QLKGTATGILHSTVKDNRGQQLRVRIQGLIVPGLGRNIFS-----------PTSLLKKGLRCVVEESTPHLTIQGK----------------------------------------TRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYR 1161
            QLKGTATGILH TVKDNRGQQLRVRIQGLIVPGLGRNIFS           PTSLLKKGLRCVVEESTPHLTIQ K                                        T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIG SERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYR
Sbjct:  289 QLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYR 686

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 584 bits (1505), Expect = 2.610e-201
Identity = 282/305 (92.46%), Postives = 288/305 (94.43%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 573 bits (1478), Expect = 1.900e-200
Identity = 278/305 (91.15%), Postives = 285/305 (93.44%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+ CK SAIKLEYAATNTPQQ+GVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE  RKKLDDRAFEGKLCG GLDSQTYRVLNPSNGA VESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERCRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAGVESRNVTFIES 330

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 581 bits (1498), Expect = 2.050e-199
Identity = 281/305 (92.13%), Postives = 287/305 (94.10%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIG SERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 584 bits (1505), Expect = 1.890e-197
Identity = 282/305 (92.46%), Postives = 288/305 (94.43%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 584 bits (1505), Expect = 1.300e-196
Identity = 282/305 (92.46%), Postives = 288/305 (94.43%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SRPGQLVVIDNMGPVNPPAKYKGG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLSGLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 574 bits (1480), Expect = 3.240e-195
Identity = 280/314 (89.17%), Postives = 287/314 (91.40%), Query Frame = 1

Query:  280 EESTPHLTIQGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            E   PH   Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVDYR +LSPCGVCQIAKHKQSP P+QSTRE SR GQLVVIDNMGP NPPAKY+GG FPYACKITDDYTKMKEVYLLRKKSDTTE VHTYNMCVAAAGGYRIE IRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDL GLRVIGARAFVHHE YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:  214 ESLVPHQK-QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 526

[Close]

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 565 bits (1457), Expect = 1.430e-190
Identity = 273/305 (89.51%), Postives = 285/305 (93.44%), Query Frame = 1

Query:  307 QGKTRTANAVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIAKHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDDYTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSELRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSMWGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHHEIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES 1221
            Q +T TANAVCFTLV ADTWHRRLGHLNARSLDILRKDT TGVD+R +LSPCGVCQIAK+KQSP P+QSTRE SRPGQLVVIDN+GPVNPPAKY GG FPYACKITDDYTK+KEVYLLRKKS+TTE VHTYN+CVAAAGGYRIETIRCDKGGENTGSE R+YCK SAIKLEYAATNTPQQIGVSERDGQTLA VT+C LKDGDFPPSMWGELMLT AYLLNRSPHSALGGATPY+KLHNKSPDLS LRVIGARAFVH E YRKKLDDRAFEGKLCG GLDSQTYRVLNPSNGAVVESR VTFIES
Sbjct:   26 QSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13394.2715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVF6_9PHAE	1.370e-250	83.41	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KMG5_9PHAE	1.950e-229	65.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT84_9PHAE	1.420e-224	81.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K500_9PHAE	2.610e-201	92.46	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	1.900e-200	91.15	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5K1R7_9PHAE	2.050e-199	92.13	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JJR8_9PHAE	1.890e-197	92.46	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	1.300e-196	92.46	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JSL6_9PHAE	3.240e-195	89.17	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRJ1_9PHAE	1.430e-190	89.51	Integrase catalytic domain-containing protein n=1 ...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13394	contig	Ecto-sp13_S_contig13394:61..1401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Stop	0
Start	1
Seed ortholog score	162.9
Seed ortholog evalue	3e-37
Seed eggNOG ortholog	3750.XP_008337255.1
Model size	1221
KEGG ko	ko:K20093
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	Mitochondrial protein
EggNOG OGs	37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759,KOG4197@1,KOG4197@2759
EC	3.6.4.12
Cds size	1191
COG Functional cat.	O
Best tax level	Streptophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03036

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462715.8992386-UTR-Ecto-sp13_S_contig13394:60..90	1681462715.8992386-UTR-Ecto-sp13_S_contig13394:60..90	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13394 61..90 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462715.9098368-CDS-Ecto-sp13_S_contig13394:90..375	1681462715.9098368-CDS-Ecto-sp13_S_contig13394:90..375	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13394 91..375 +
1681462715.9190576-CDS-Ecto-sp13_S_contig13394:495..1401	1681462715.9190576-CDS-Ecto-sp13_S_contig13394:495..1401	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13394 496..1401 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13394.2715.1	prot_Ecto-sp13_S_contig13394.2715.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig13394 91..1401 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig13394:61..1401+
coding sequence from alignment at Ecto-sp13_S_contig13394:61..1401+

protein sequence of mRNA_Ecto-sp13_S_contig13394.2715.1

>prot_Ecto-sp13_S_contig13394.2715.1 ID=prot_Ecto-sp13_S_contig13394.2715.1|Name=mRNA_Ecto-sp13_S_contig13394.2715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=397bp
MFDNRLIPDGNLHNYTQRNSPKIVDVAGESQLKGTATGILHSTVKDNRGQ
QLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTIQGKTRTAN
AVCFTLVIADTWHRRLGHLNARSLDILRKDTDTGVDYRGNLSPCGVCQIA
KHKQSPRPQQSTREPSRPGQLVVIDNMGPVNPPAKYKGGFFPYACKITDD
YTKMKEVYLLRKKSDTTEVVHTYNMCVAAAGGYRIETIRCDKGGENTGSE
LRNYCKKSAIKLEYAATNTPQQIGVSERDGQTLAAVTQCHLKDGDFPPSM
WGELMLTGAYLLNRSPHSALGGATPYAKLHNKSPDLSGLRVIGARAFVHH
EIYRKKLDDRAFEGKLCGSGLDSQTYRVLNPSNGAVVESRTVTFIES

mRNA from alignment at Ecto-sp13_S_contig13394:61..1401+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig13394.2715.1 ID=mRNA_Ecto-sp13_S_contig13394.2715.1|Name=mRNA_Ecto-sp13_S_contig13394.2715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13394:61..1401+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTAGTAGACACGGGAGCATCGGAGACCATGTTTGACAATCGCCTCAT
CCCCGACGGAAACCTTCACAATTACACCCAGCGAAACTCTCCAAAGATCG
TGGACGTGGCCGGAGAAAGCCAACTCAAAGGCACGGCCACGGGCATCCTA
CACAGCACCGTCAAGGACAATCGAGGACAGCAATTGCGCGTGCGGATTCA
GGGACTCATCGTTCCGGGGCTTGGTCGCAACATTTTTTCGCCCACCTCCC
TCCTGAAAAAAGGATTGCGTTGCGTCGTCGAAGAGAGCACTCCACACCTC
ACTATCCAAGGCAAGGTAGTTCCACTCACACAAGATCCGCGAGACCAGGG
AATGTGTACCCTCGACATTACGTTCGAGCAGAACGTCCAGCCATCTGGCA
CGAAATCCCTCATGGCCCACCAGAAGCAGTCACAGACCCGCACGGCGAAC
GCCGTCTGCTTTACGCTAGTGATCGCAGATACGTGGCACAGGAGGCTTGG
ACATCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGATACCG
GAGTGGACTATCGCGGCAATCTCTCCCCTTGCGGGGTCTGCCAGATCGCG
AAACACAAGCAGTCCCCCCGCCCGCAGCAATCCACTCGCGAACCATCACG
GCCTGGACAGCTTGTGGTTATCGACAACATGGGGCCTGTTAATCCACCTG
CGAAATATAAAGGAGGCTTCTTCCCATACGCGTGCAAGATCACCGACGAC
TACACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAGTCTGACACGAC
CGAGGTGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACC
GGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATCCGAA
CTTCGGAACTACTGCAAGAAATCAGCCATCAAGCTCGAATACGCCGCCAC
CAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCTGG
CCGCAGTCACCCAGTGTCATCTGAAGGATGGAGATTTTCCGCCGTCCATG
TGGGGGGAGTTAATGCTGACTGGAGCATACCTGTTGAACAGGTCCCCACA
CTCAGCACTGGGAGGAGCTACGCCATACGCGAAGTTGCACAATAAGTCAC
CTGATCTCTCGGGCCTTCGAGTCATTGGAGCGCGCGCCTTCGTACACCAC
GAGATATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATG
TGGTTCCGGCCTCGACAGCCAGACCTACAGGGTATTGAATCCATCCAACG
GGGCCGTGGTCGAGAGCCGGACTGTGACTTTCATCGAATCT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13394:61..1401+

>mRNA_Ecto-sp13_S_contig13394.2715.1 ID=mRNA_Ecto-sp13_S_contig13394.2715.1|Name=mRNA_Ecto-sp13_S_contig13394.2715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13394:61..1401+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGACAATCGCCTCATCCCCGACGGAAACCTTCACAATTACACCCA
GCGAAACTCTCCAAAGATCGTGGACGTGGCCGGAGAAAGCCAACTCAAAG
GCACGGCCACGGGCATCCTACACAGCACCGTCAAGGACAATCGAGGACAG
CAATTGCGCGTGCGGATTCAGGGACTCATCGTTCCGGGGCTTGGTCGCAA
CATTTTTTCGCCCACCTCCCTCCTGAAAAAAGGATTGCGTTGCGTCGTCG
AAGAGAGCACTCCACACCTCACTATCCAAGGCAAGACCCGCACGGCGAAC
GCCGTCTGCTTTACGCTAGTGATCGCAGATACGTGGCACAGGAGGCTTGG
ACATCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGATACCG
GAGTGGACTATCGCGGCAATCTCTCCCCTTGCGGGGTCTGCCAGATCGCG
AAACACAAGCAGTCCCCCCGCCCGCAGCAATCCACTCGCGAACCATCACG
GCCTGGACAGCTTGTGGTTATCGACAACATGGGGCCTGTTAATCCACCTG
CGAAATATAAAGGAGGCTTCTTCCCATACGCGTGCAAGATCACCGACGAC
TACACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAGTCTGACACGAC
CGAGGTGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACC
GGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATCCGAA
CTTCGGAACTACTGCAAGAAATCAGCCATCAAGCTCGAATACGCCGCCAC
CAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCTGG
CCGCAGTCACCCAGTGTCATCTGAAGGATGGAGATTTTCCGCCGTCCATG
TGGGGGGAGTTAATGCTGACTGGAGCATACCTGTTGAACAGGTCCCCACA
CTCAGCACTGGGAGGAGCTACGCCATACGCGAAGTTGCACAATAAGTCAC
CTGATCTCTCGGGCCTTCGAGTCATTGGAGCGCGCGCCTTCGTACACCAC
GAGATATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATG
TGGTTCCGGCCTCGACAGCCAGACCTACAGGGTATTGAATCCATCCAACG
GGGCCGTGGTCGAGAGCCGGACTGTGACTTTCATCGAATCT