mRNA_Ecto-sp13_S_contig13313.2655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13313.2655.1
Unique NamemRNA_Ecto-sp13_S_contig13313.2655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13313.2655.1 vs. uniprot
Match: D8LM05_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM05_ECTSI)

HSP 1 Score: 725 bits (1872), Expect = 3.660e-256
Identity = 446/529 (84.31%), Postives = 457/529 (86.39%), Query Frame = 1 
Query:    1 RVVVFLMSHGADARAVNHLGETPLDLGSRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVPANLPSVKEEATGTGEXXXXXXXXXXXXXXXXR------------------TTAPKTTTARGVTFSPSRRNRRAKKCSEIARSRLPYVSSASLSSAAPSFGEGRCRSNSGGGIGGVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDG-AHGGXXXXXXXXRERRQAGGV----GAVHFKDYRMGRSSAVLVSGXXXXXXLKRGRGTARPASCPVPGGIDEGRGPGTPGSRVSSSTXXXXXXXXXXXXXXXXXXXXXEMRGGSSNDGCRGDGGARVVGTRQRHGGGHSARGEQSERQGARRRPEKGERAPGSMPDSEARRQIWQWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGYISCSRFSKLVVRGRLQPLAAGKACTRRCFGGVPFFLMVRFSAGLRCERTR 1518
            RVVVFLMSHGADARAVNHLGETPLDLG RLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVPANLPSVKEEAT    XXXXXXXXX       R                  TTAPKTTTARGVTFSPSRRNRRAKK  EIA+SRLPYVSSASLSSAAPSFGEGRCRS+SGGG GGVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDG AHG XXXXXXXX             G VHFKDYRMGRSSAVLVSGXXXX  LKRGRGT RPASCP+PGG+DEGRGPGTPGSRV+SS      XXXXXXXXXXXXXXXX M   S+N+GCRGDGGARVVGTRQRH G HSARGEQSER  ARRR E+GERAPGSMPDSEARRQIW+WLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGY+SCSR SKLVVRGRLQPLAAGK+ TRRC GGVPFFL V FSAGLRCERTR
Sbjct:  194 RVVVFLMSHGADARAVNHLGETPLDLGFRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVPANLPSVKEEATRXXXXXXXXXXXXVARTTGLRGAPPVATAGTAAVXXXXXTTAPKTTTARGVTFSPSRRNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGRGGVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDGGAHGXXXXXXXXXXXXXXXXXXXXXXGGVHFKDYRMGRSSAVLVSGXXXXG-LKRGRGTTRPASCPMPGGVDEGRGPGTPGSRVTSSAKGAGQXXXXXXXXXXXXXXXXXMXXXSTNNGCRGDGGARVVGTRQRHSGRHSARGEQSERPCARRRREEGERAPGSMPDSEARRQIWEWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGYVSCSRLSKLVVRGRLQPLAAGKSRTRRCSGGVPFFLTVWFSAGLRCERTR 721
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BLAST of mRNA_Ecto-sp13_S_contig13313.2655.1 vs. uniprot
Match: A0A6H5JR91_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR91_9PHAE)

HSP 1 Score: 624 bits (1609), Expect = 2.680e-216
Identity = 387/459 (84.31%), Postives = 392/459 (85.40%), Query Frame = 1 
Query:    1 RVVVFLMSHGADARAVNHLGETPLDLGSRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVPANLPSVKEEATGT----GEXXXXXXXXXXXXXXXXRTTAPKTTTARGVTFSPSRRNRRAKKCSEIARSRLPYVSSASLSSAAPSFGEGRCRSNSGGGIGGVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDGAHGGXXXXXXXXRERRQAGGVGAVHFKDYRMGRSSAVLVSGXXXXXXLKRGRGTARPASCPVPGGIDEGRGPGTPGSRVSSSTXXXXXXXXXXXXXXXXXXXXXEMRGGSSNDGCRGDGGARVVGTRQRHGGGHSARGEQSERQGARRRPEKGERAPGSMPDSEARRQIWQWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTG 1365
            RVVVFLMSHGADARAVNHLGETPLDLGSRLT GFPK RSLLL ILDSSKYQIAGGTIFIVPANLPSVKEE TG       XXXXXXXXXXXXXXXX        TARGVTFSPSRRNRRAKK  EIA+SRLPYVSSASLSSAAPSFGEGRCRS+SGGG GGV TPALPRGDHETALGGARHRLAAGHGARCSRNDHDGAHG         RE RQAGG   VHFKDYRMGRSSAVLVS       LKR RG ARPASCPVPGGIDEGRGPGTPGSRV+SS       XXXXXXXXXXXXXXX         GCRGDGG RVVGTRQRHGG HSAR EQSER GARRR E+GERA GSMPDSEARRQIW+WLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTG
Sbjct:  266 RVVVFLMSHGADARAVNHLGETPLDLGSRLTGGFPKFRSLLLPILDSSKYQIAGGTIFIVPANLPSVKEEVTGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARGVTFSPSRRNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGRGGVTTPALPRGDHETALGGARHRLAAGHGARCSRNDHDGAHG--RGGGGAARECRQAGGASGVHFKDYRMGRSSAVLVSSSGGGG-LKRWRGAARPASCPVPGGIDEGRGPGTPGSRVASSATGAGQRXXXXXXXXXXXXXXXXXXXXXXXXGCRGDGGVRVVGTRQRHGGRHSAREEQSERPGARRRREEGERALGSMPDSEARRQIWEWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTG 721
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BLAST of mRNA_Ecto-sp13_S_contig13313.2655.1 vs. uniprot
Match: A0A835YHJ9_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHJ9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.520e-9
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 RVVVFLMSHGADARAVNHLGETPLDLGSRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVP 183
            ++VV+LM+ GADAR  +  G T LDL +R T+G+P+++ LL+ +LDSSKYQ+ G  ++IVP
Sbjct:  427 QLVVYLMARGADARVADGAGRTALDLATRGTAGYPRAQRLLVGVLDSSKYQVEGDALYIVP 487
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BLAST of mRNA_Ecto-sp13_S_contig13313.2655.1 vs. uniprot
Match: A0A7S3XZT3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZT3_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 7.330e-6
Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 1 
Query: 1168 LVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGYISCSRFSKLVVRGRLQPLAAGK 1434
            L E S +VA    +++  A + +  D   EL+    L+  L RV + L   E ++L++E DPT +G+++  RF K +   RL+PL  G+
Sbjct:   98 LNERSDFVAFSGEAELLDAFRVLTADPGSELVPVATLKNFLTRVSEILTEEEAEDLIEEADPTQSGFVNYKRFIKHMRVSRLRPLPQGR 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13313.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM05_ECTSI3.660e-25684.31Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JR91_9PHAE2.680e-21684.31PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835YHJ9_9STRA4.520e-950.82PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3XZT3_HETAK7.330e-632.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13313contigEcto-sp13_S_contig13313:3..2102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1521
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_002370.1
Cds size1503
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.5384114-UTR-Ecto-sp13_S_contig13313:2..201681462711.5384114-UTR-Ecto-sp13_S_contig13313:2..20Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13313 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.548709-CDS-Ecto-sp13_S_contig13313:20..13661681462711.548709-CDS-Ecto-sp13_S_contig13313:20..1366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13313 21..1366 +
1681462711.5585203-CDS-Ecto-sp13_S_contig13313:1945..21021681462711.5585203-CDS-Ecto-sp13_S_contig13313:1945..2102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13313 1946..2102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13313.2655.1prot_Ecto-sp13_S_contig13313.2655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13313 21..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13313.2655.1

>prot_Ecto-sp13_S_contig13313.2655.1 ID=prot_Ecto-sp13_S_contig13313.2655.1|Name=mRNA_Ecto-sp13_S_contig13313.2655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp
MSHGADARAVNHLGETPLDLGSRLTSGFPKSRSLLLSILDSSKYQIAGGT
IFIVPANLPSVKEEATGTGEEEDAGAGVSAAAAAAARTTAPKTTTARGVT
FSPSRRNRRAKKCSEIARSRLPYVSSASLSSAAPSFGEGRCRSNSGGGIG
GVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDGAHGGGRGGGGAA
RERRQAGGVGAVHFKDYRMGRSSAVLVSGGGGGGGLKRGRGTARPASCPV
PGGIDEGRGPGTPGSRVSSSTTGAGQRRRRRRPATTTPGGGTEMRGGSSN
DGCRGDGGARVVGTRQRHGGGHSARGEQSERQGARRRPEKGERAPGSMPD
SEARRQIWQWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVY
RALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGY
ISCSRFSKLVVRGRLQPLAAGKACTRRCFGGVPFFLMVRFSAGLRCERTR
*
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mRNA from alignment at Ecto-sp13_S_contig13313:3..2102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13313.2655.1 ID=mRNA_Ecto-sp13_S_contig13313.2655.1|Name=mRNA_Ecto-sp13_S_contig13313.2655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13313:3..2102+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGTGGTGGTGTTCCTCATGTCCCACGGCGCGGACGCGAGAGCGGTCAA
CCACCTCGGGGAGACCCCGCTCGACCTGGGGTCCCGCCTCACGAGCGGCT
TCCCCAAATCCCGGAGCCTCCTCTTATCCATCCTGGACTCGAGCAAGTAC
CAGATCGCCGGGGGCACCATCTTTATCGTTCCGGCGAACCTCCCTAGCGT
TAAGGAGGAGGCGACGGGAACGGGGGAGGAGGAGGACGCCGGCGCGGGTG
TTTCTGCTGCTGCCGCCGCCGCCGCTCGCACCACCGCCCCCAAGACGACG
ACCGCAAGGGGGGTGACGTTCTCGCCCTCGCGGAGAAACCGGAGGGCGAA
GAAGTGTTCCGAAATCGCGAGGTCGCGGCTCCCGTACGTGTCCTCCGCCT
CCCTGTCCTCCGCCGCTCCGTCCTTCGGCGAGGGGCGATGCCGCAGCAAC
AGCGGAGGAGGAATAGGAGGGGTCGCCACGCCGGCGCTCCCCCGTGGCGA
CCACGAGACGGCCCTCGGGGGGGCACGCCATCGCCTGGCCGCCGGTCACG
GCGCCCGATGTTCGCGGAACGACCACGATGGTGCTCACGGCGGCGGCCGC
GGCGGCGGTGGTGCCGCCAGAGAACGTCGTCAAGCCGGAGGGGTGGGCGC
TGTCCACTTCAAGGACTACAGGATGGGGAGGAGCTCTGCCGTGCTCGTCA
GCGGCGGCGGCGGCGGCGGCGGATTGAAGCGCGGGAGAGGGACCGCGCGA
CCCGCGTCCTGCCCTGTGCCGGGAGGTATCGACGAGGGCCGCGGCCCTGG
AACACCGGGTAGTCGGGTTTCGAGCTCGACAACAGGAGCAGGGCAGCGGC
GGCGGCGGCGACGGCCAGCGACTACCACCCCGGGCGGTGGGACAGAGATG
AGGGGTGGTAGCAGCAATGACGGGTGTCGTGGTGACGGTGGCGCCCGAGT
CGTCGGCACCAGGCAGCGGCACGGTGGAGGTCACTCCGCGCGCGGAGAAC
AGAGCGAGAGGCAGGGCGCAAGGCGGCGACCGGAGAAGGGCGAGAGAGCT
CCCGGCAGCATGCCTGACAGCGAGGCGAGGAGGCAGATTTGGCAGTGGCT
GCGCGAGAGCGCCGGCACCGCGTCGGCCGTCCCGCCGGCCATGGCCCACG
GGTCAGGCGGCGAAATCCTTGTCGAGACCAGCTCGTACGTGGCGACGGGC
CGCCGGTCGGACGTGTACCGGGCCCTGCAGGCCATCAAGGGGGACGGCCG
GGGGGAGCTCATCAGCGCCGAGAAGCTGAGGGCGGTCCTGTGCCGCGTCG
GCCAGCCGCTGCTGCCCAACGAGATGGACGAGCTGCTGCAGGAGACTGAT
CCGACGGGAACGGGGTGAGTGTCTCGGACAGATCTCTGCCTGTTCGAACC
GTCAGGCAGTAGAAAGTGTTAGGATATATCTTGAAGGCCTGGGTTCTGGT
TACTTCGTGTGTTGTGTATTGAGTCTAGATAGAAAATCCTTCGACTGTAT
ATTTTCAACCATGACGTTTTATTTCCTTCAGTGCCGGTTTGGTGTTCGCT
CCATGTTGTGCTGACTCAACTGTCTTCCAGTGCTGATGAAGTGACCTCCC
CGCCCCCCCACCTCCATTTATCCGTGCGCTTTTTTGTCCATGCTTTGCGA
GCTGCATCTTGATCTTGAAGGTATCCACAACAACAAAACATCCGCAAAGT
CGTTCACATGCACGACGGCGAAGAAATCAGACACACACACGAGCGCCCCC
CGGTTGACCATTCCGTACAGTATCGTTTCCCGCCGCGAGTACCGGAAAAA
AATATCGCGTCACCCACACTCAACACCCTTTCCTCGTCGGTGCTCGTCTC
TATTACGTCCGATCTCGAACTCTCTTCGAACCAATCAATCCCCTCTAGAC
TAACTACGCATCCTGCTACTCCGCTCCTTCCTTGTGTTAAAAGGTACATC
TCCTGCTCGAGGTTTTCGAAGCTCGTGGTCCGAGGACGCCTTCAGCCACT
CGCAGCAGGTAAGGCATGCACACGGCGTTGCTTCGGCGGTGTTCCGTTTT
TTCTCATGGTTCGGTTTTCGGCTGGGTTGCGATGCGAACGAACGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13313:3..2102+

>mRNA_Ecto-sp13_S_contig13313.2655.1 ID=mRNA_Ecto-sp13_S_contig13313.2655.1|Name=mRNA_Ecto-sp13_S_contig13313.2655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13313:3..2102+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGGCGCGGACGCGAGAGCGGTCAACCACCTCGGGGAGACCCC
GCTCGACCTGGGGTCCCGCCTCACGAGCGGCTTCCCCAAATCCCGGAGCC
TCCTCTTATCCATCCTGGACTCGAGCAAGTACCAGATCGCCGGGGGCACC
ATCTTTATCGTTCCGGCGAACCTCCCTAGCGTTAAGGAGGAGGCGACGGG
AACGGGGGAGGAGGAGGACGCCGGCGCGGGTGTTTCTGCTGCTGCCGCCG
CCGCCGCTCGCACCACCGCCCCCAAGACGACGACCGCAAGGGGGGTGACG
TTCTCGCCCTCGCGGAGAAACCGGAGGGCGAAGAAGTGTTCCGAAATCGC
GAGGTCGCGGCTCCCGTACGTGTCCTCCGCCTCCCTGTCCTCCGCCGCTC
CGTCCTTCGGCGAGGGGCGATGCCGCAGCAACAGCGGAGGAGGAATAGGA
GGGGTCGCCACGCCGGCGCTCCCCCGTGGCGACCACGAGACGGCCCTCGG
GGGGGCACGCCATCGCCTGGCCGCCGGTCACGGCGCCCGATGTTCGCGGA
ACGACCACGATGGTGCTCACGGCGGCGGCCGCGGCGGCGGTGGTGCCGCC
AGAGAACGTCGTCAAGCCGGAGGGGTGGGCGCTGTCCACTTCAAGGACTA
CAGGATGGGGAGGAGCTCTGCCGTGCTCGTCAGCGGCGGCGGCGGCGGCG
GCGGATTGAAGCGCGGGAGAGGGACCGCGCGACCCGCGTCCTGCCCTGTG
CCGGGAGGTATCGACGAGGGCCGCGGCCCTGGAACACCGGGTAGTCGGGT
TTCGAGCTCGACAACAGGAGCAGGGCAGCGGCGGCGGCGGCGACGGCCAG
CGACTACCACCCCGGGCGGTGGGACAGAGATGAGGGGTGGTAGCAGCAAT
GACGGGTGTCGTGGTGACGGTGGCGCCCGAGTCGTCGGCACCAGGCAGCG
GCACGGTGGAGGTCACTCCGCGCGCGGAGAACAGAGCGAGAGGCAGGGCG
CAAGGCGGCGACCGGAGAAGGGCGAGAGAGCTCCCGGCAGCATGCCTGAC
AGCGAGGCGAGGAGGCAGATTTGGCAGTGGCTGCGCGAGAGCGCCGGCAC
CGCGTCGGCCGTCCCGCCGGCCATGGCCCACGGGTCAGGCGGCGAAATCC
TTGTCGAGACCAGCTCGTACGTGGCGACGGGCCGCCGGTCGGACGTGTAC
CGGGCCCTGCAGGCCATCAAGGGGGACGGCCGGGGGGAGCTCATCAGCGC
CGAGAAGCTGAGGGCGGTCCTGTGCCGCGTCGGCCAGCCGCTGCTGCCCA
ACGAGATGGACGAGCTGCTGCAGGAGACTGATCCGACGGGAACGGGGTAC
ATCTCCTGCTCGAGGTTTTCGAAGCTCGTGGTCCGAGGACGCCTTCAGCC
ACTCGCAGCAGGTAAGGCATGCACACGGCGTTGCTTCGGCGGTGTTCCGT
TTTTTCTCATGGTTCGGTTTTCGGCTGGGTTGCGATGCGAACGAACGCGG
TGA
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