mRNA_Ecto-sp13_S_contig13296.2641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13296.2641.1
Unique NamemRNA_Ecto-sp13_S_contig13296.2641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13296.2641.1 vs. uniprot
Match: D8LDX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX2_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 6.680e-137
Identity = 187/211 (88.63%), Postives = 198/211 (93.84%), Query Frame = 1 
Query:    1 MAGALGVALGSTPVAGGAPNGIDKISGAGFQRGQDAFSLWTENGLPISRANKAEYVRLASKPARGKFKGGGKYEFSFNGPLLYGDVDVNRLTLELSALVKKGSGDHWQVDMFNTRRGKRWDKIGDLSKAGCDWSTSNLVVMSDDGCGDAPQRINTTRTKRSKPKRCISDYFDADSNEVLVRFHTRGSNEVVFIDYAHIKASFGFNPHSGGA 633
            M GALG+ALGSTP+  GAPNGI+KISGAGFQRGQD FSLWT+ GLP+SRANKAEYVRLAS+PARGKFKGGGK+EFSFNGPLLYGDVDVN LTLELSALVKKGSGDHWQVDMFNTRRGKRWDKIGDLS+AG DWSTSNLVVMSDDGCGDAP+RINTTRTKR KPKRCISDYFD DSNEVL+R HTR S EVVFIDYAHIKASFG NPH+GGA
Sbjct:    1 MVGALGLALGSTPLIAGAPNGIEKISGAGFQRGQDEFSLWTKEGLPVSRANKAEYVRLASRPARGKFKGGGKFEFSFNGPLLYGDVDVNTLTLELSALVKKGSGDHWQVDMFNTRRGKRWDKIGDLSEAGSDWSTSNLVVMSDDGCGDAPKRINTTRTKRWKPKRCISDYFDTDSNEVLIRVHTRESKEVVFIDYAHIKASFGLNPHAGGA 211
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BLAST of mRNA_Ecto-sp13_S_contig13296.2641.1 vs. uniprot
Match: D8LDX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX1_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 2.330e-90
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 1 
Query:  121 TENGLPISRANKAEYVRLASKPARGKFKGGGKYEFSFNGPLLYGDVDVNRLTLELSALVKKGSGDHWQVDMFNTRRGKRWDKIGDLSKAGCDWSTSNLVVMSDDGCGDAPQRINTTRTKRSKPKRCISDYFDADSNEVLVRFHTRGSNEVVFIDYAHIKASFGFNPHSGGA 633
            T  GLPISRAN   Y+RLASK A GKFKGG +YEFSF+ PLL+GDVD N LTLELSALV KGSGD WQVDMFN+RRGK+WDKIGDLSKAG DW+TSNLVV S D CGDAP+RINTTRTK  K KRCISDYFD DSNEVL+R HT GS EV+FIDYA IK SF FNPHSG A
Sbjct:    7 TGEGLPISRANDETYLRLASKSAGGKFKGG-QYEFSFSAPLLFGDVDANILTLELSALVMKGSGDRWQVDMFNSRRGKKWDKIGDLSKAGSDWTTSNLVVASGDRCGDAPKRINTTRTKSQKSKRCISDYFDTDSNEVLIRIHTPGSKEVIFIDYARIKPSFRFNPHSGHA 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13296.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDX2_ECTSI6.680e-13788.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDX1_ECTSI2.330e-9077.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13296contigEcto-sp13_S_contig13296:674..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons5
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.6169436-CDS-Ecto-sp13_S_contig13296:673..7931681462710.6169436-CDS-Ecto-sp13_S_contig13296:673..793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13296 674..793 +
1681462710.627021-CDS-Ecto-sp13_S_contig13296:1871..19671681462710.627021-CDS-Ecto-sp13_S_contig13296:1871..1967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13296 1872..1967 +
1681462710.6367164-CDS-Ecto-sp13_S_contig13296:2450..25011681462710.6367164-CDS-Ecto-sp13_S_contig13296:2450..2501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13296 2451..2501 +
1681462710.6464684-CDS-Ecto-sp13_S_contig13296:2644..29441681462710.6464684-CDS-Ecto-sp13_S_contig13296:2644..2944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13296 2645..2944 +
1681462710.6557724-CDS-Ecto-sp13_S_contig13296:3294..33631681462710.6557724-CDS-Ecto-sp13_S_contig13296:3294..3363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13296 3295..3363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13296.2641.1prot_Ecto-sp13_S_contig13296.2641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13296 674..3363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13296.2641.1

>prot_Ecto-sp13_S_contig13296.2641.1 ID=prot_Ecto-sp13_S_contig13296.2641.1|Name=mRNA_Ecto-sp13_S_contig13296.2641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MAGALGVALGSTPVAGGAPNGIDKISGAGFQRGQDAFSLWTENGLPISRA
NKAEYVRLASKPARGKFKGGGKYEFSFNGPLLYGDVDVNRLTLELSALVK
KGSGDHWQVDMFNTRRGKRWDKIGDLSKAGCDWSTSNLVVMSDDGCGDAP
QRINTTRTKRSKPKRCISDYFDADSNEVLVRFHTRGSNEVVFIDYAHIKA
SFGFNPHSGGA*
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mRNA from alignment at Ecto-sp13_S_contig13296:674..3363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13296.2641.1 ID=mRNA_Ecto-sp13_S_contig13296.2641.1|Name=mRNA_Ecto-sp13_S_contig13296.2641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13296:674..3363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGCGCTCTCGGAGTAGCCCTCGGGTCGACACCAGTCGCAGGGGG
CGCCCCCAACGGGATCGACAAAATATCAGGGGCTGGATTCCAACGAGGTC
AAGATGCATTCTCCCTCTGGGTAAGAAGGCCTTCCCTCGACGAGTTGTGG
AAGTCGGTGGACATTCCGGCGAGTAGGTTCAAATAATTGGCGATCATCCG
CGTGTTCCAGGCTGGAAACATAGGTCAGCTGGGCCAAGGGCGGTGGTGTT
ACAGTAGTGTTTCAGTCCGAAGGGGTTGATGGCGATATTAGTGTACACTG
TAGTGCATTGCATCTGGCTGATTCCAATTCCTGAGGCGTGGCCCGTCGCA
GCGGTCCGATTGTGTGGATACATTTCCGTGTCGGTTCAGCGTGGCGAACG
AGGTGCATGCCCCTCATCGGGCCTCTGCTATTGAGGCTGCTAAAAAGTTG
AATCATTCCAGTCCCTGATCCCTTCTTGGTAGACAGAGCGTGCCAGAGAG
GACGTGGTTAGACATATCATTCCGATGGCCAATGAATGCTTGATGAAGCG
GCACAGATCGGCGTACGGTAGGTCTAGGTGCGACTGTTTCATAGGCGATG
CCAATCCTTCCAAAACGCATAAAATATCGCCAAGCGGTCGAAGCAAGCAA
GCATTTCTTGAACCGTCAAGAAATTCGATGAATGAATATTGAATCTGACC
TCACTCCGTCCTTCACACCCAACTACGCCGAACCATAGTACTCCAGAGAT
GTGACAAGTTTCAATGTCACGTTTGCTCGGAATGATACAAGGCCCAAGAA
ATTCATGTGGCACGTTCGCGTTGTCCAATGTGTGTGCAATTCCGCGCGTT
CGGGGAAAGCACGTGAAGGGCGCAACACGCGCGTCCGGTGGCCTATGTCA
CCGTCCCGCAAAGTCATGGCAATGCCGAACACCGAAGTAGGCATGCACGC
TATGTCTGTTTCCGAATAGACATGTCTACGGTCCACGGGACCTCATGTAA
CGTTTGCAATTGTGACCAGCGAGGTTCCATCGACATGCCAGGCATCTGGC
GAAAAGTCTTGGTTCCATGTCGCGGAAACGACGCAATCAGGAAAAGCAGT
CTAAGCCTGAATGAATGTATCGGGTTATGAACGAAACCCACCCAACCAAC
CAACCCAACGCGTCATTGACGTCTCTTCCATTTGACGCCATGCGACAGAC
GGAGAACGGCTTGCCGATCTCGCGTGCAAACAAGGCTGAATACGTGCGCC
TCGCCTCGAAACCGGCACGCGGCAAGTTCAAAGGGGGTGGTAAGGTACGT
ATGTATGGCCGTGCCATGTTTGCCGAAGTTTTTGGGGCGGCCTTGATGGT
CATTCCATTCATCGCTTGCTTGTTCCTTCGTTTACGAGTGAGTGTCGCCG
TATCCATACATGGTGAGGTGAACGTTCATCATCCCATGCTGAAACGCTCG
GTTCCAGATGTACCTGCCACTTGGTGCAGCAGCCGTTGTGCAAGCCACGG
CGTTCCCTCCCTAGAACTACTGTAGGGAGGTTAACGACACTATGCTCGAG
TCGGGGCAACGTTTCGTAGACCACACACATCAATGGGTTTACGGTCTTTC
GGATTATGATATTTTCGACGGTACGCTTTAGATTACAGTACATCCGAACG
CACGCCGTTTGACCTGACTGGTCGCACTGGTATATCATTTCTGGAATTGG
GTTGGCCGTGTGACAAATGTCTTTATCGCCGCCATGGACCCCTCTGTCAC
CTTTATGTACTCCTGCAATCTCGTCAGTACGAGTTCAGCTTCAACGGGCC
ATTGCTCTACGGCGACGTGGACGTCAATGTAAGTCGTGTATTTTTGTGTT
CGTTAGACCTGAAAAATGGAAGAGGAACCTTCTATTGCTACATGGACGTT
GATGATGGTTATCAGCACAACTTCTGTGGTACGTGAATCCTCTCCGGGCG
CCTTCTTTGAAACTCCGGCAGAGATTGACCTTGGAGCTCTCTGCCTTGGT
CAAGAAGGGCAGCGGCGACCACTGGCAAGTAGACATGTTCAACACGAGAC
GAGGGAAGAGGTGGGACAAGATCGGTGACCTCTCCAAGGCGGGTTGTGAT
TGGTCCACGTCTAACCTGGTGGTAATGAGCGACGACGGTTGCGGCGATGC
CCCGCAACGCATCAATACCACGAGGACGAAGAGATCGAAGCCCAAGCGCT
GCATCAGCGACTACTTCGATGCCGACAGCAACGAAGTCCTCGTCCGTTTT
CACACGCGGGGATCGAACGAGGTACCGCTCCTCCCGCCTTGCCCATGTCC
GCGTGTCGTGATGTACTGTAGACTACTGCAGGCTAGTCTATCTGCCGCCG
TTCCTCGTCCGACCCCTCTCTGCATGTTCACAAAGTGTAGCTACGGCGTT
CGGCCACCTCCACCACGCCGGCCTCGATCTCTGTATCCAGCCAATACTGT
TCCCGCCACAAGTTTCCACTTCTGCTACCGTGTTCATATCCACACCGCAG
TTTACACCACGGTTCCCTCGCCAATATTCATACACAACTTGACGACAACA
CCTGCTCGTTTCCGCGCCTCCCTGGCATGGCTACGCGTTGTTTGTCGATG
CCGGGAAATCAATCCGCGCAGGTTGTCTTCATTGACTACGCACACATCAA
GGCTTCGTTCGGATTTAACCCACACTCAGGTGGCGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13296:674..3363+

>mRNA_Ecto-sp13_S_contig13296.2641.1 ID=mRNA_Ecto-sp13_S_contig13296.2641.1|Name=mRNA_Ecto-sp13_S_contig13296.2641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13296:674..3363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGCGCTCTCGGAGTAGCCCTCGGGTCGACACCAGTCGCAGGGGG
CGCCCCCAACGGGATCGACAAAATATCAGGGGCTGGATTCCAACGAGGTC
AAGATGCATTCTCCCTCTGGACGGAGAACGGCTTGCCGATCTCGCGTGCA
AACAAGGCTGAATACGTGCGCCTCGCCTCGAAACCGGCACGCGGCAAGTT
CAAAGGGGGTGGTAAGTACGAGTTCAGCTTCAACGGGCCATTGCTCTACG
GCGACGTGGACGTCAATAGATTGACCTTGGAGCTCTCTGCCTTGGTCAAG
AAGGGCAGCGGCGACCACTGGCAAGTAGACATGTTCAACACGAGACGAGG
GAAGAGGTGGGACAAGATCGGTGACCTCTCCAAGGCGGGTTGTGATTGGT
CCACGTCTAACCTGGTGGTAATGAGCGACGACGGTTGCGGCGATGCCCCG
CAACGCATCAATACCACGAGGACGAAGAGATCGAAGCCCAAGCGCTGCAT
CAGCGACTACTTCGATGCCGACAGCAACGAAGTCCTCGTCCGTTTTCACA
CGCGGGGATCGAACGAGGTTGTCTTCATTGACTACGCACACATCAAGGCT
TCGTTCGGATTTAACCCACACTCAGGTGGCGCATAG
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