mRNA_Ecto-sp13_S_contig13223.2605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13223.2605.1
Unique NamemRNA_Ecto-sp13_S_contig13223.2605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13223.2605.1 vs. uniprot
Match: A0A6H5K9U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9U1_9PHAE)

HSP 1 Score: 451 bits (1160), Expect = 1.420e-154
Identity = 239/247 (96.76%), Postives = 241/247 (97.57%), Query Frame = 1 
Query:    1 DSSAAAAFRPTPVVVAVHDCDPGADTDALEWAVMEEMLAVWREVDHPSGATLQECFDIQ---VLAIPHPRYHAVAYATAIEALKQKLQTMEASTATAGFRDRVTRAWQAVRDAGATMIPAKSEMVALYKVDSAYGEVMGSADMQLKSWRQTVGAGRVVGDFGERSTKLYRSSVKAFDTKTVRFSTSATRATKRAALLSTMETGIKELYARQLSMLCARALKSYKAALVKLLGDDVLNEESEANVLRQ 732
            DSSAAAAFRPTP+VVAVHDCDPGADTDALEWAVMEEMLAVWREVDHPSG TLQECFDIQ   VLAIPHPRYHAVAYATAIEALKQKLQTMEASTATAGFRDRVTRAWQAVRDAGA MIPAKSEMVALYKVDSAYGEVMGSADMQLKSWRQTVGAGRVVGDFGERSTKLYRSSVKAFDTKTVRFSTSATRATKRAALLSTMETGIKELYARQLSMLCARALKSYKAAL+KLL DDVLNEESEANVLRQ
Sbjct:  213 DSSAAAAFRPTPLVVAVHDCDPGADTDALEWAVMEEMLAVWREVDHPSGTTLQECFDIQANIVLAIPHPRYHAVAYATAIEALKQKLQTMEASTATAGFRDRVTRAWQAVRDAGAIMIPAKSEMVALYKVDSAYGEVMGSADMQLKSWRQTVGAGRVVGDFGERSTKLYRSSVKAFDTKTVRFSTSATRATKRAALLSTMETGIKELYARQLSMLCARALKSYKAALLKLLQDDVLNEESEANVLRQ 459
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13223.2605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9U1_9PHAE1.420e-15496.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13223contigEcto-sp13_S_contig13223:2..4448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score469.5
Seed ortholog evalue9.2e-130
Seed eggNOG ortholog2880.D8LTX2
Model size732
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.GTP binding
EggNOG OGsKOG2203@1,KOG2203@2759
Ec32 ortholog descriptionRHD3a, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic
Ec32 orthologEc-12_004000.1
Cds size732
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13223.2605.1prot_Ecto-sp13_S_contig13223.2605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13223 2..4448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.5953512-CDS-Ecto-sp13_S_contig13223:1..911681462707.5953512-CDS-Ecto-sp13_S_contig13223:1..91Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 2..91 +
1681462707.607265-CDS-Ecto-sp13_S_contig13223:1568..16551681462707.607265-CDS-Ecto-sp13_S_contig13223:1568..1655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 1569..1655 +
1681462707.617049-CDS-Ecto-sp13_S_contig13223:2041..22181681462707.617049-CDS-Ecto-sp13_S_contig13223:2041..2218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 2042..2218 +
1681462707.6338987-CDS-Ecto-sp13_S_contig13223:2625..27541681462707.6338987-CDS-Ecto-sp13_S_contig13223:2625..2754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 2626..2754 +
1681462707.6456637-CDS-Ecto-sp13_S_contig13223:3457..35101681462707.6456637-CDS-Ecto-sp13_S_contig13223:3457..3510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 3458..3510 +
1681462707.6596103-CDS-Ecto-sp13_S_contig13223:4252..44481681462707.6596103-CDS-Ecto-sp13_S_contig13223:4252..4448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13223 4253..4448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13223.2605.1

>prot_Ecto-sp13_S_contig13223.2605.1 ID=prot_Ecto-sp13_S_contig13223.2605.1|Name=mRNA_Ecto-sp13_S_contig13223.2605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
DSSAAAAFRPTPVVVAVHDCDPGADTDALEWAVMEEMLAVWREVDHPSGA
TLQECFDIQVLAIPHPRYHAVAYATAIEALKQKLQTMEASTATAGFRDRV
TRAWQAVRDAGATMIPAKSEMVALYKVDSAYGEVMGSADMQLKSWRQTVG
AGRVVGDFGERSTKLYRSSVKAFDTKTVRFSTSATRATKRAALLSTMETG
IKELYARQLSMLCARALKSYKAALVKLLGDDVLNEESEANVLRQ
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mRNA from alignment at Ecto-sp13_S_contig13223:2..4448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13223.2605.1 ID=mRNA_Ecto-sp13_S_contig13223.2605.1|Name=mRNA_Ecto-sp13_S_contig13223.2605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13223:2..4448+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGTCAGCTGCGGCGGCGTTCAGACCGACCCCTGTGGTGGTGGCCGT
ACACGACTGTGACCCCGGCGCGGACACGGATGCTCTCGAGGTACAGTCTG
GACGTCTACACATAGAGTACACTTACGGACAGACGCCTTCTGGTCACTGT
TCTTCCTTCTCGTCGGCACTTGTTTTTCTTTTTTCGCGTTGCCGCTTGTG
TGTTTTTAGGAGATATACGCGTCGAGTGTTGGATCAGTGCGGACATACGA
AGGTACTGGGTAGAGAGAGATCGGAACGGTTTTTTAATGTGAAGACAACA
ACAACAACAACAACATGCCTGGTACAATCATAGAAAGACGGCATTGGTGT
CGCACACGGGCGTCTGTTGGTTGGTTGGTTATTTGCTAGGCGAGCGCGCG
GCCAGCCCGACAGCGTGCAGTAGCGTTCCTTGTGGTTGGTCCTTGAGGCC
GCTGGCAGGCAGGCACAACTCGAGAGGATGCCAGAAATTTTTCGTGTAGT
GTACACATCATAGCGCTCTGCCGTGGGTTTGGCGGTGGCCGCTGGTGGTT
TCCGGGCGGACGAGGTGATGTGGGCTGATGGTGGCTCTTGTTGTCATCTC
CTTCCTTGCTACATCAAGGGCCGAAAGGTCCTTTGAGCTGTATGGGTGGG
CTTGATGCGTGATTGCGCCTCCACGACTTCCGCGGCTCGTGACCGTGGTG
ATGGCGACCACGGCACCCCCAGCGACCTGAATAAGGAAGCGGGGGGGGGG
GCGTGGCTCTTTTCCCGTCTGGCCCGGTCCGTGTCCTGCTCGGTTTTTGG
CTCCCCTTCCCCCGCCGTTTGCCGTACAGGAAGACATGAAGTGTGGCGTA
GGGCAGGTGTCCCGCGTTGTTGGATGGTGACTTGTGACATTAAGCACGTG
TGTGCCTGTGTGTCTGGTCTTTTCGTAGGCATGTCTTGTTGAAGTAGGTA
CAGTGCATCGGAGTTCGCTCGCTGCTGGTAGAGTGCTGATTGCTCGGTGG
TGACGTCATCGTGTTGACTGCGTTGCTCAGGATGAGGGATGGAATGGGAT
GGGACGTTTTTGGTCGCGCACGTCACGTCGGGTGGTGCTTCTTTGTCCCC
GACATCAACCACCAGACGTAATATGTCCCAAATGCTACATACGTGCTCGA
GACGGTGCGCGTTGGCGCGCGACGAAGTGATTTGCCGCCATGACGGTCTT
GATTTTTCTGGATTCAGTGGAAGGACAACGTGGTACCGCTTCTCGCGGTG
GCAAGCGAGAGTCTTCGCGCGGGCTGTCTGGTAAATAAGGTCGTCATCAC
CCTTCCTGCCTAACGGGGGCGCCCGTCTCGTGGCCTGTTTCGTGGTTGCT
GTTGCCTGTTCCCGCTTTTCGGTTTTGTTTTTTTCCGCCGGCCCCTGTTT
TTTCCACGCGCGCGCGCCTGGTGGTTGTCGTGCTCGTCCGTCAGGATCGA
GATCTTCTCATGTTTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TTCTCTCCGTCTCTGACTCTTGTGTGTTGCTTCGTCTATCCCGCCTCGCC
CCTTTTACCGCTATCAGTGGGCGGTTATGGAGGAGATGTTGGCCGTGTGG
CGGGAGGTCGACCACCCTTCCGGGGCCACTTTGCAGGAGTGCTTCGACAT
TCAGGTGAGTCTTACTGCGTCTCCTCATACTGCGTCTCCTCTTGCTGCAT
CTTCGTCCTGCTTGCACGGCCGGCTCGGATCCCCTCCGGGACTAAATCTT
GCCGTTGCTTCTTCTGTTGTTGTTGCTGTTGTTGTTGCTGTTGCTGCTTT
TGTTCGCCAGGAGGGGAAAAAACGGGCTTGACTTCGCACGTGGTGGTGGT
GGTCGTCGCCTCTTTTGTTTGCTTGTATTGGTGTAGTTCTGTCTTTCAAT
CGTGTTTAAGCATGAAACGGCATCACTGCGACCGGGACGAGGACTAGAAA
TTGTTTTTGCTTGTCTTCTCTAATCACACCTTAACTGCTGTTGTTTTGTG
TTTCGTGTTATTTAATTTCTTGATTTCTTTGTTGCGGCAGGTGCTGGCTA
TCCCCCACCCCCGGTATCACGCCGTCGCCTACGCCACTGCCATCGAGGCT
CTCAAGCAGAAGCTGCAAACCATGGAGGCGTCGACGGCTACGGCCGGTTT
CCGCGACAGGGTCACTAGGGCCTGGCAGGCGGTGCGCGATGCGGGAGCGA
CCATGATCCCGGCAAAGGTAAGTCAGAGCTGCGCACGTAAGGACAAAGAA
GAAAGGAGGGTGCGCAGAGGCCCGGCCAGTCCGGTGGGACATGATTGCGG
TGGCGAGTTGGGTCGGGAGAGGATGAGGCCATTTTCGCCAATCTCGTGTT
TTTTTTTTTTTTTTTGTATATTTTCCCTCGTGTGCGACTCTACCACGGTC
TTTCTCTTGTTTTTCGCCCTGTGGCAAAAGCCATCTCTCGCCGGTCCGAA
GTAGTGGCGGTTGATGACGTTTCAGCTTGTGGCAAGGGCATCCACATTTG
GAAGTCTTGTGTGCTTTTACATATTCTTAAGCTCAACACTCAATGCCCAC
CCCCGTGAGCATACATCCCTGGAAATATTTCGCCGACGCGCGTTCCCCAC
GGCTATCTTGTTTCGTCACGGCAGTCTGAGATGGTGGCCCTCTACAAGGT
GGACTCGGCGTACGGAGAGGTGATGGGCAGTGCTGACATGCAGCTCAAGT
CCTGGAGACAGACCGTCGGGGCGGGCAGGGTCGTTGGTGACTTCGGCGAG
CGGGTGAGGATGGATGGGCGACAACTAAGTGCGGTGTTGGTCGTTATTTT
GACACCTGTTTTTTTGTTCGCTTGGTTTGTTGTTCTGGATATTTTTTCTG
TTCTCGATCGCTAGCTGTAACACACGCTTGCTAACTATTGCTGCGATGGA
GTCTTAGCCAGTCCGTAACCCCGGCGTGAGCTGACTGCTGTTATCTTTCG
GGTGTGCCACAGGGAACACCTGTGTGTAGTCAGTATACGTACCACCGTTG
TCCTGGTCCGTGATGTCGGAGAGCTAAGCGGACTAATTCGGGTACGAATT
CCCCTGTGTTTGCGCCTGTGCCGGCATTGCTCATACTGCTCTGCCGACGT
TCGGGCCAATGTGTTTGTAGCAGTACACCTTAAGCACCGAACACCCGAGA
GTTAAGGGCAGCGTGCTTCTATTACACGGAGAGCGTGGCTATGCACGCCC
GTCAATGGTTTTTTTTTTCTTCCTCTCCCTTCCTCCGCGACCTCTTACCA
TTCTGATGAGATACGCACCTTCTGTGTGTTGCCGTGCATGTTTTTGTTTT
TTTTCCTCTCTACCGGTGTCTGCTTTTGTTGGCGTGGTCACCACTAACCG
GCTTCCAAAAACCACGTGTCGTGGTCATCCTTCATGGCTAACCACGAAAC
TTCGTCGCCTTCACCGCAACTGGCATTCGATCGCTCGATCGCTCGATCAC
CTTCAGTCGACGAAGCTGTACCGGTCGTCCGTCAAGGCTTTCGACACCAA
GACGGTCAGGTGATCCACAAGGGGTTAGACGAAGGGAGATGGGGGGGGCG
GGATGCCTGACCGTGCGTACCGTGCGTACCAGACCCCTCGTGGGCTGAGT
TCCAAAGCTCGATTCGTTCCACGGGAGGAAAGGTGCCCGCGCCGAGGAGG
GCGGCGTCGGGAATATGTTACGGGAGAGTTTTCCGAAGACGTCTCGTTCG
GCATCTTGGCACCACCCTCTTCTTGTAGGAGTGGGTAGCGATCGAGCTTT
GAAAATCTGCACAAAAGAGGGGCCGCTTTTATTGCGGTTATCACCATCAC
ACAAGGCAGTCCAGCATGTGCGCCTACCAGGAGGTTTTGGGGCCAGTGGG
CCACAGGCCCAACTCTCGGTACTTGTGTCACAAGCCGCTTGAGGTCTTGA
GCGCGGGCAAGCAATTTTGAGGCGGTCTTGTTTGGCTTGGTTGCCTCCGA
TTGGTTTGATGTGTTGCCGTTTCGTCTTCGTTCCGAGCGATACAGCAGTT
TCTTGAGACGGCAGTGCCTCGGGTCGGACGCGCGGTCGAACGCCGGCCTA
GGGTCGAATGCGGAGCGTTGAACGAGTAGGGCCTCCGTCTGCCGTGTGTG
TGGCGTTGTGCCGCGTGCACTAGTACCCAAGCTTTTGCCGGCGTACGCGC
ATGTGCAACTATCAACGTGCAAGCGCGTTCTGAAAGGCGACGCTCTCGCG
CTCTGTCTGGATCCCGCCCTTGGTGTGCACTCACCCGCCTGCAACGTGCA
GGTTCAGCACTAGCGCAACTAGGGCGACGAAGAGGGCGGCTCTGCTCTCC
ACCATGGAGACGGGCATCAAGGAGCTGTACGCCCGGCAGCTGTCGATGCT
GTGCGCGAGGGCCCTGAAGAGCTATAAGGCGGCTTTGGTGAAGCTCCTCG
GCGACGATGTGCTCAACGAGGAGTCGGAGGCGAACGTCTTGCGTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13223:2..4448+

>mRNA_Ecto-sp13_S_contig13223.2605.1 ID=mRNA_Ecto-sp13_S_contig13223.2605.1|Name=mRNA_Ecto-sp13_S_contig13223.2605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13223:2..4448+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGTCAGCTGCGGCGGCGTTCAGACCGACCCCTGTGGTGGTGGCCGT
ACACGACTGTGACCCCGGCGCGGACACGGATGCTCTCGAGTGGGCGGTTA
TGGAGGAGATGTTGGCCGTGTGGCGGGAGGTCGACCACCCTTCCGGGGCC
ACTTTGCAGGAGTGCTTCGACATTCAGGTGCTGGCTATCCCCCACCCCCG
GTATCACGCCGTCGCCTACGCCACTGCCATCGAGGCTCTCAAGCAGAAGC
TGCAAACCATGGAGGCGTCGACGGCTACGGCCGGTTTCCGCGACAGGGTC
ACTAGGGCCTGGCAGGCGGTGCGCGATGCGGGAGCGACCATGATCCCGGC
AAAGTCTGAGATGGTGGCCCTCTACAAGGTGGACTCGGCGTACGGAGAGG
TGATGGGCAGTGCTGACATGCAGCTCAAGTCCTGGAGACAGACCGTCGGG
GCGGGCAGGGTCGTTGGTGACTTCGGCGAGCGGTCGACGAAGCTGTACCG
GTCGTCCGTCAAGGCTTTCGACACCAAGACGGTCAGGTTCAGCACTAGCG
CAACTAGGGCGACGAAGAGGGCGGCTCTGCTCTCCACCATGGAGACGGGC
ATCAAGGAGCTGTACGCCCGGCAGCTGTCGATGCTGTGCGCGAGGGCCCT
GAAGAGCTATAAGGCGGCTTTGGTGAAGCTCCTCGGCGACGATGTGCTCA
ACGAGGAGTCGGAGGCGAACGTCTTGCGTCAG
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