mRNA_Ecto-sp13_S_contig13212.2601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.150e-37 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMF+GVICLETAMPAAVKERIVF
Sbjct: 1091 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFVGVICLETAMPAAVKERIVF 1161
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE) HSP 1 Score: 119 bits (299), Expect = 7.380e-30 Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
QYWRN +YNWMRMQLAIL A+IFGSSFID+D ETE+D+ASRL VI+MSTMF+GVICL+TA+PA KERIVF
Sbjct: 444 QYWRNPNYNWMRMQLAILMAVIFGSSFIDADIETESDLASRLAVIFMSTMFVGVICLQTAIPAGAKERIVF 514
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI) HSP 1 Score: 119 bits (299), Expect = 7.790e-30 Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
QYWRN +YNWMRMQLAIL A+IFGSSFID+D ETE+D+ASRL VI+MSTMF+GVICL+TA+PA KERIVF
Sbjct: 1179 QYWRNPNYNWMRMQLAILIAVIFGSSFIDADIETESDLASRLAVIFMSTMFVGVICLQTAIPAGAKERIVF 1249
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.180e-20 Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
QYWRN +YNW R+ LA++ AIIFG++ I D E+EADV ++ GVIYMSTMF+G IC++TA+ A ERIVF
Sbjct: 328 QYWRNPNYNWSRIMLALVIAIIFGTASIGRDLESEADVGAQTGVIYMSTMFVGSICMQTAIAAGFLERIVF 398
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: K8YUH2_NANGC (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUH2_NANGC) HSP 1 Score: 75.9 bits (185), Expect = 2.020e-14 Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
YWR+ +YN+ RM +++L A++FGS F D ++TE D+ R+G++Y+ST F+G++ + + MP KER F
Sbjct: 701 YWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAF 770
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: W7TP47_9STRA (Atp-binding cassette superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP47_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.040e-14 Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
YWR+ +YN+ RM +++L A++FGS F D ++TE D+ R+G++Y+ST F+G++ + + MP KER F
Sbjct: 1310 YWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAF 1379
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A8K1CR16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR16_PYTOL) HSP 1 Score: 67.0 bits (162), Expect = 2.660e-11 Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
YWR +YNW R+ + I ++FG F DS F+T + LG+++MST FLG++ L + +P A + R F
Sbjct: 1080 YWRTPEYNWTRIAVHIFLGVLFGGVFFDSKFDTYQGINGGLGMVFMSTAFLGIVALNSMVPIASEARSAF 1149
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 9.290e-11 Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
QYWR+ +YN+ R A++ A++F SSF++S+ ET A + S GVI+M+ F+G++ +T++P ER VF
Sbjct: 1036 QYWRSPNYNFARSFSAVIQALVFASSFVNSNPETVAQLTSVFGVIFMACNFVGIMNYQTSIPFTAMERAVF 1106
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A7S3HH75_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH75_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.150e-10 Identity = 26/70 (37.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
YWR+ YN++R+ ++ L A+IF S++ + T+ DV +R+ V+Y+S MF+GV+ +++ P ++ER F
Sbjct: 230 YWRSPTYNFVRVVVSSLIALIFASTYAQQKYTTDVDVIARVAVVYISAMFMGVVNMKSVQPVILEERPAF 299
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: F0WSN4_9STRA (ATPbinding Cassette (ABC) Superfamily putative n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSN4_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.240e-10 Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKER 204
YWR YN R+ + I+ A++FG F+ S+++T ++ S LG++YM+T+F GV+ + +P A+ ER
Sbjct: 1078 YWRTPSYNLTRIIVFIILALLFGLIFVSSEYQTYQELNSALGMLYMTTVFAGVVSFNSVLPIAISER 1144 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13212.2601.1 >prot_Ecto-sp13_S_contig13212.2601.1 ID=prot_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp MRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAback to top mRNA from alignment at Ecto-sp13_S_contig13212:2393..2845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13212.2601.1 ID=mRNA_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:2393..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13212:2393..2845+ >mRNA_Ecto-sp13_S_contig13212.2601.1 ID=mRNA_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:2393..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |