mRNA_Ecto-sp13_S_contig13212.2601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13212.2601.1
Unique NamemRNA_Ecto-sp13_S_contig13212.2601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.150e-37
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMF+GVICLETAMPAAVKERIVF
Sbjct: 1091 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFVGVICLETAMPAAVKERIVF 1161          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.380e-30
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            QYWRN +YNWMRMQLAIL A+IFGSSFID+D ETE+D+ASRL VI+MSTMF+GVICL+TA+PA  KERIVF
Sbjct:  444 QYWRNPNYNWMRMQLAILMAVIFGSSFIDADIETESDLASRLAVIFMSTMFVGVICLQTAIPAGAKERIVF 514          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.790e-30
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            QYWRN +YNWMRMQLAIL A+IFGSSFID+D ETE+D+ASRL VI+MSTMF+GVICL+TA+PA  KERIVF
Sbjct: 1179 QYWRNPNYNWMRMQLAILIAVIFGSSFIDADIETESDLASRLAVIFMSTMFVGVICLQTAIPAGAKERIVF 1249          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.180e-20
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            QYWRN +YNW R+ LA++ AIIFG++ I  D E+EADV ++ GVIYMSTMF+G IC++TA+ A   ERIVF
Sbjct:  328 QYWRNPNYNWSRIMLALVIAIIFGTASIGRDLESEADVGAQTGVIYMSTMFVGSICMQTAIAAGFLERIVF 398          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: K8YUH2_NANGC (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUH2_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 2.020e-14
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            YWR+ +YN+ RM +++L A++FGS F D  ++TE D+  R+G++Y+ST F+G++ + + MP   KER  F
Sbjct:  701 YWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAF 770          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: W7TP47_9STRA (Atp-binding cassette superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP47_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.040e-14
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            YWR+ +YN+ RM +++L A++FGS F D  ++TE D+  R+G++Y+ST F+G++ + + MP   KER  F
Sbjct: 1310 YWRSPNYNFTRMFISVLVAVVFGSVFHDKPYDTETDIVGRVGLMYLSTSFVGIVNMMSVMPVMAKERAAF 1379          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A8K1CR16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR16_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 2.660e-11
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            YWR  +YNW R+ + I   ++FG  F DS F+T   +   LG+++MST FLG++ L + +P A + R  F
Sbjct: 1080 YWRTPEYNWTRIAVHIFLGVLFGGVFFDSKFDTYQGINGGLGMVFMSTAFLGIVALNSMVPIASEARSAF 1149          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.290e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 QYWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            QYWR+ +YN+ R   A++ A++F SSF++S+ ET A + S  GVI+M+  F+G++  +T++P    ER VF
Sbjct: 1036 QYWRSPNYNFARSFSAVIQALVFASSFVNSNPETVAQLTSVFGVIFMACNFVGIMNYQTSIPFTAMERAVF 1106          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: A0A7S3HH75_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH75_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.150e-10
Identity = 26/70 (37.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKERIVF 213
            YWR+  YN++R+ ++ L A+IF S++    + T+ DV +R+ V+Y+S MF+GV+ +++  P  ++ER  F
Sbjct:  230 YWRSPTYNFVRVVVSSLIALIFASTYAQQKYTTDVDVIARVAVVYISAMFMGVVNMKSVQPVILEERPAF 299          
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Match: F0WSN4_9STRA (ATPbinding Cassette (ABC) Superfamily putative n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSN4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.240e-10
Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 YWRNQDYNWMRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETAMPAAVKER 204
            YWR   YN  R+ + I+ A++FG  F+ S+++T  ++ S LG++YM+T+F GV+   + +P A+ ER
Sbjct: 1078 YWRTPSYNLTRIIVFIILALLFGLIFVSSEYQTYQELNSALGMLYMTTVFAGVVSFNSVLPIAISER 1144          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13212.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI1.150e-3798.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7U8_9PHAE7.380e-3078.87ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LFN4_ECTSI7.790e-3078.87Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQN0_ECTSI2.180e-2060.56ABC transporter domain-containing protein n=1 Tax=... [more]
K8YUH2_NANGC2.020e-1442.86Atp-binding cassette superfamily n=1 Tax=Nannochlo... [more]
W7TP47_9STRA2.040e-1442.86Atp-binding cassette superfamily n=2 Tax=Monodopsi... [more]
A0A8K1CR16_PYTOL2.660e-1140.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZIR5_9STRA9.290e-1142.25ABC-2 type transporter-domain-containing protein n... [more]
A0A7S3HH75_9STRA3.150e-1037.14Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
F0WSN4_9STRA3.240e-1038.81ATPbinding Cassette (ABC) Superfamily putative n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13212contigEcto-sp13_S_contig13212:2393..2845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.5
Seed ortholog evalue8.5e-24
Seed eggNOG ortholog2880.D8LFP2
Model size215
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
Cds size183
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.3007152-UTR-Ecto-sp13_S_contig13212:2392..24221681462707.3007152-UTR-Ecto-sp13_S_contig13212:2392..2422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13212 2393..2422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462707.3105695-CDS-Ecto-sp13_S_contig13212:2422..24831681462707.3105695-CDS-Ecto-sp13_S_contig13212:2422..2483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13212 2423..2483 +
1681462707.3189325-CDS-Ecto-sp13_S_contig13212:2723..28451681462707.3189325-CDS-Ecto-sp13_S_contig13212:2723..2845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13212 2724..2845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13212.2601.1prot_Ecto-sp13_S_contig13212.2601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13212 2423..2845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13212.2601.1

>prot_Ecto-sp13_S_contig13212.2601.1 ID=prot_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MRMQLAILTAIIFGSSFIDSDFETEADVASRLGVIYMSTMFLGVICLETA
MPAAVKERIVF
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mRNA from alignment at Ecto-sp13_S_contig13212:2393..2845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13212.2601.1 ID=mRNA_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:2393..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACTGGCGCAACCAGGACTACAATTGGATGAGAATGCAGCTCGCCAT TCTAACGGCCATCATATTCGGCAGCAGCTTCATCGACTCAGGTGCGTGCT TTGTGTCTCGTGTGTTTGCTAATCCGCAACCGAAGTAGTTCGAATGGGTG GTACACCGTAAGGATGTGAAGTTGCGCACGGGGATGTTGAGTTATGTTTG CGCCACAACCACGAGGATACCAATGGGTTGCTTTGGAAATATCTCGATAC GTGTATCAGCATCTGCTATGCAACGCTGATGAGATAACCACACTAGTGGT CCACGTTGCCCACCTCGGTCTGCACAAGCAGACTTCGAGACAGAGGCAGA CGTGGCGTCGAGGCTGGGGGTGATCTACATGTCCACCATGTTCCTAGGGG TGATCTGCCTGGAAACAGCCATGCCTGCCGCGGTGAAGGAGCGCATCGTC TTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13212:2393..2845+

>mRNA_Ecto-sp13_S_contig13212.2601.1 ID=mRNA_Ecto-sp13_S_contig13212.2601.1|Name=mRNA_Ecto-sp13_S_contig13212.2601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13212:2393..2845+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAATGCAGCTCGCCATTCTAACGGCCATCATATTCGGCAGCAGCTT
CATCGACTCAGACTTCGAGACAGAGGCAGACGTGGCGTCGAGGCTGGGGG
TGATCTACATGTCCACCATGTTCCTAGGGGTGATCTGCCTGGAAACAGCC
ATGCCTGCCGCGGTGAAGGAGCGCATCGTCTTC
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